pycom07g28390

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007881
Physical Location & Seq
Forward (+)
27718147 .. 27721066
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGGAAGATGAGAAGGCATTGCAGCAGCAGCAACTATTGCTACAGCAGCAACAACAGCAACAGCAACAAAACCAACAGCATCAACAGCAACAGTTATTGCTCCTGCAACAACTGCAAAGGCAACAGCAACAAGCCCAACAGGCCGCTGCCATTTCCCGTTTCCCTTCCAACATCGATGCCCATTTGCGCCCACTCCGACCCATCAATCTCCACCCTAACCCTAATTCCGCTCCTAATCTCCAACAAAATCCTGTTGCAAACCCACGGCAACAGCAGCAGCAGCCCCAACAGCCCCAACAACAGCAGCAGCAGCAGCAACAGCAGAGGGTGATCCGACCCGGGAACCAGGCGGAGCTACAGATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCCGATTTCAAGCGTCCCTTCTCTTCCCTCGAAGACGCCTGCGAGAGGTTGCTGCCTTATCATGTAGTGGCAGATTATGAGGCAGAGGAGGATGACAGAATCCTTGACTCTGACACCACAGGCCTGATTCCATCTCGCTCTCAGCAGTGGGATCACAACATATCTTCTAAAGTTGCAGAGTTTACCGCAACATTTGAGAAACAAGCACTAGCCTTTAACATAATTTCCCGTAAGCGAGCTTTAGGGGAATTTCGGTCTGAAGAGAGACTTATGATTGAGCAGGCACTTTGCCAAGAAGAAAAAAGGACATGTCTGGAATTGAAAGCAGAGTTTGATTCAAGAGAGAAAGCTGGCCGGGAAGCTAAATTACGAGCTCAGGCAGAGCAAGCTCGGGTTGAGTCGCAAGCACATGCTGAAATGTTAGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGTCTGAAGGCAATGACGTTTCGATTGGGCACGACATGAGAGAGCAGGAGCATGGGGTTAACCCAGAAGAGATGATAAATGGATGGGGAAATAATGTGCAAAGAGATGAGAAGGAACCATGTGAGGATTTTTTAAATGATGAAGAGACTGAGAATGGATCCACGGGCATGCAGGACGGCTGGCGTGAAGTTGGGGAGTTTGATTTGAACACTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

355

Amino Acids

40.86

Weight (kDa)

5.0

Isoelectric Point (pI)

73.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 125 - 239 3.3e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 230
AciI CCGC 5 cut(s) 144, 228, 350, 382, 579
AclWI GGATC 4 cut(s) 325, 552, 999, 1012
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 672, 873
AcyI GRCGYC 2 cut(s) 375, 429
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 438, 831, 832
AflIII ACRYGT 1 cut(s) 701
AgsI TTSAA 4 cut(s) 403, 715, 732, 1054
AjnI CCWGG 3 cut(s) 345, 369, 377
AluBI AGCT 7 cut(s) 355, 632, 743, 755, 767, 782, 818
AluI AGCT 7 cut(s) 355, 632, 743, 755, 767, 782, 818
Alw21I GWGCWC 2 cut(s) 769, 844
Alw26I GTCTC 2 cut(s) 652, 986
Alw44I GTGCAC 1 cut(s) 840
AlwI GGATC 4 cut(s) 325, 552, 999, 1012
Ama87I CYCGRG 3 cut(s) 338, 783, 819
AoxI GGCC 4 cut(s) 141, 514, 745, 822
ApaI GGGCCC 1 cut(s) 826
ApaLI GTGCAC 1 cut(s) 840
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 822, 823
AsuC2I CCSGG 3 cut(s) 339, 340, 749
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 3 cut(s) 338, 783, 819
BaeGI GKGCMC 3 cut(s) 826, 844, 879
BamHI GGATCC 1 cut(s) 1004
BanII GRGCYC 2 cut(s) 769, 826
BarI GAAGNNNNNNTAC 2 cut(s) 744, 776
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 769, 844
BccI CCATC 5 cut(s) 209, 355, 399, 532, 924
BceAI ACGGC 2 cut(s) 281, 1039
BciT130I CCWGG 3 cut(s) 347, 371, 379
BcnI CCSGG 3 cut(s) 339, 340, 749
BcoDI GTCTC 2 cut(s) 652, 986
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 2 cut(s) 41, 356
BglI GCCNNNNNGGC 1 cut(s) 140
Bme1390I CCNGG 6 cut(s) 339, 340, 347, 371, 379, 749
BmeT110I CYCGRG 3 cut(s) 338, 783, 819
BmgT120I GGNCC 2 cut(s) 822, 823
BmiI GGNNCC 5 cut(s) 344, 824, 825, 963, 1006
BmrFI CCNGG 6 cut(s) 339, 340, 347, 371, 379, 749
BmsI GCATC 2 cut(s) 88, 166
BpiI GAAGAC 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 768
BpuMI CCSGG 3 cut(s) 339, 340, 749
Bsa29I ATCGAT 1 cut(s) 174
BsaHI GRCGYC 2 cut(s) 375, 429
BsaJI CCNNGG 3 cut(s) 263, 338, 1008
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 831, 832
Bse3DI GCAATG 2 cut(s) 17, 865
BseBI CCWGG 3 cut(s) 347, 371, 379
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 263, 338, 1008
BseGI GGATG 3 cut(s) 391, 490, 935
BseLI CCNNNNNNNGG 3 cut(s) 438, 831, 832
BseMI GCAATG 2 cut(s) 17, 865
BseMII CTCAG 3 cut(s) 548, 782, 987
BseRI GAGGAG 1 cut(s) 494
BseSI GKGCMC 3 cut(s) 826, 844, 879
BshFI GGCC 4 cut(s) 143, 516, 747, 824
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 769, 844
BsiHKCI CYCGRG 3 cut(s) 338, 783, 819
BsiSI CCGG 2 cut(s) 339, 748
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 3 cut(s) 438, 831, 832
BsmAI GTCTC 2 cut(s) 652, 986
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 4 cut(s) 143, 516, 747, 824
BsoBI CYCGRG 3 cut(s) 338, 783, 819
Bsp120I GGGCCC 1 cut(s) 822
Bsp1286I GDGCHC 4 cut(s) 769, 826, 844, 879
Bsp143I GATC 3 cut(s) 330, 544, 1004
BspACI CCGC 5 cut(s) 144, 228, 350, 382, 579
BspANI GGCC 4 cut(s) 143, 516, 747, 824
BspCNI CTCAG 3 cut(s) 547, 781, 988
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 344, 824, 825, 963, 1006
BspPI GGATC 4 cut(s) 325, 552, 999, 1012
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 17, 865
BssECI CCNNGG 3 cut(s) 263, 338, 1008
BssMI GATC 3 cut(s) 330, 544, 1004
BssNI GRCGYC 2 cut(s) 375, 429
Bst2UI CCWGG 3 cut(s) 347, 371, 379
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 4 cut(s) 421, 648, 909, 984
BstACI GRCGYC 2 cut(s) 375, 429
BstAPI GCANNNNNTGC 2 cut(s) 37, 112
BstC8I GCNNGC 8 cut(s) 433, 630, 675, 745, 780, 798, 1016, 1028
BstDEI CTNAG 3 cut(s) 534, 768, 996
BstDSI CCRYGG 2 cut(s) 263, 1008
BstENI CCTNNNNNAGG 1 cut(s) 436
BstF5I GGATG 3 cut(s) 391, 490, 935
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 333, 547, 1007
BstMAI GTCTC 2 cut(s) 652, 986
BstMBI GATC 3 cut(s) 330, 544, 1004
BstNI CCWGG 3 cut(s) 347, 371, 379
BstNSI RCATGY 3 cut(s) 705, 806, 1018
BstSCI CCNGG 6 cut(s) 337, 338, 345, 369, 377, 747
BstSFI CTRYAG 2 cut(s) 41, 356
BstSLI GKGCMC 3 cut(s) 826, 844, 879
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 1004
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 4 cut(s) 143, 516, 747, 824
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 2 cut(s) 263, 1008
BtsCI GGATG 3 cut(s) 391, 490, 935
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 8 cut(s) 433, 630, 675, 745, 780, 798, 1016, 1028
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 822, 823
Cfr9I CCCGGG 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 3 cut(s) 383, 395, 437
Csp6I GTAC 1 cut(s) 367
CviAII CATG 7 cut(s) 455, 702, 803, 883, 899, 966, 1015
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 534, 768, 996
DpnI GATC 3 cut(s) 332, 546, 1006
DpnII GATC 3 cut(s) 330, 544, 1004
DraI TTTAAA 1 cut(s) 981
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 4 cut(s) 421, 648, 909, 984
EarI CTCTTC 4 cut(s) 421, 648, 909, 984
EciI GGCGGA 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 767
Eco147I AGGCCT 1 cut(s) 516
Eco24I GRGCYC 2 cut(s) 769, 826
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 672, 873
Eco88I CYCGRG 3 cut(s) 338, 783, 819
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 3 cut(s) 345, 369, 377
EcoT38I GRGCYC 2 cut(s) 769, 826
FaeI CATG 7 cut(s) 458, 705, 806, 886, 902, 969, 1018
FalI AAGNNNNNCTT 4 cut(s) 395, 427, 645, 677
FaqI GGGAC 1 cut(s) 393
FatI CATG 7 cut(s) 454, 701, 802, 882, 898, 965, 1014
FauI CCCGC 1 cut(s) 375
FokI GGATG 3 cut(s) 378, 497, 942
FriOI GRGCYC 2 cut(s) 769, 826
FspBI CTAG 1 cut(s) 602
GlaI GCGC 1 cut(s) 188
HaeIII GGCC 4 cut(s) 143, 516, 747, 824
HapII CCGG 2 cut(s) 339, 748
HgaI GACGC 3 cut(s) 383, 395, 437
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 2 cut(s) 375, 429
Hin1II CATG 7 cut(s) 458, 705, 806, 886, 902, 969, 1018
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 5 cut(s) 492, 500, 520, 728, 791
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 2 cut(s) 339, 748
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 3 cut(s) 576, 842, 907
Hpy188I TCNGA 5 cut(s) 197, 335, 505, 652, 853
Hpy188III TCNNGA 3 cut(s) 395, 707, 732
Hpy8I GTNNAC 3 cut(s) 576, 842, 907
HpyAV CCTTC 5 cut(s) 7, 174, 421, 848, 952
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 8 cut(s) 22, 106, 115, 257, 569, 842, 946, 1018
HpyF3I CTNAG 3 cut(s) 534, 768, 996
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 2 cut(s) 375, 429
Hsp92II CATG 7 cut(s) 458, 705, 806, 886, 902, 969, 1018
HspAI GCGC 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 330, 544, 1004
LmnI GCTCC 4 cut(s) 105, 235, 352, 895
LweI GCATC 2 cut(s) 88, 166
MaeI CTAG 1 cut(s) 602
MaeII ACGT 1 cut(s) 864
MalI GATC 3 cut(s) 332, 546, 1006
MbiI CCGCTC 1 cut(s) 230
MboI GATC 3 cut(s) 330, 544, 1004
MboII GAAGA 8 cut(s) 17, 408, 437, 549, 665, 701, 926, 1001
MflI RGATCY 1 cut(s) 1004
MhlI GDGCHC 4 cut(s) 769, 826, 844, 879
MluCI AATT 5 cut(s) 223, 615, 641, 710, 758
MlyI GAGTC 2 cut(s) 494, 800
MmeI TCCRAC 4 cut(s) 192, 220, 265, 358
MnlI CCTC 7 cut(s) 318, 431, 432, 466, 472, 475, 964
MseI TTAA 4 cut(s) 609, 906, 980, 1063
MslI CAYNNNNRTG 1 cut(s) 1013
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 339, 748
MspR9I CCNGG 6 cut(s) 339, 340, 347, 371, 379, 749
MvaI CCWGG 3 cut(s) 347, 371, 379
NciI CCSGG 3 cut(s) 339, 340, 749
NdeII GATC 3 cut(s) 330, 544, 1004
NlaIII CATG 7 cut(s) 458, 705, 806, 886, 902, 969, 1018
NlaIV GGNNCC 5 cut(s) 344, 824, 825, 963, 1006
NspI RCATGY 3 cut(s) 705, 806, 1018
PaeI GCATGC 1 cut(s) 1018
PceI AGGCCT 1 cut(s) 516
PciI ACATGT 1 cut(s) 701
PfeI GAWTC 3 cut(s) 492, 520, 728
PleI GAGTC 2 cut(s) 494, 799
PpsI GAGTC 2 cut(s) 494, 799
PscI ACATGT 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 3 cut(s) 345, 369, 377
PspGI CCWGG 3 cut(s) 345, 369, 377
PspN4I GGNNCC 5 cut(s) 344, 824, 825, 963, 1006
PspOMI GGGCCC 1 cut(s) 822
PspPI GGNCC 2 cut(s) 822, 823
PsuI RGATCY 1 cut(s) 1004
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 1013
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 4 cut(s) 609, 906, 980, 1063
Sau3AI GATC 3 cut(s) 330, 544, 1004
Sau96I GGNCC 2 cut(s) 822, 823
SchI GAGTC 2 cut(s) 494, 800
ScrFI CCNGG 6 cut(s) 339, 340, 347, 371, 379, 749
SduI GDGCHC 4 cut(s) 769, 826, 844, 879
SetI ASST 9 cut(s) 357, 443, 634, 745, 757, 769, 784, 820, 867
SfaNI GCATC 2 cut(s) 88, 166
SfcI CTRYAG 2 cut(s) 41, 356
SmaI CCCGGG 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 1018
Sse9I AATT 5 cut(s) 223, 615, 641, 710, 758
SseBI AGGCCT 1 cut(s) 516
SsiI CCGC 5 cut(s) 144, 228, 350, 382, 579
SspMI CTAG 1 cut(s) 602
SstI GAGCTC 1 cut(s) 769
StuI AGGCCT 1 cut(s) 516
StyD4I CCNGG 6 cut(s) 337, 338, 345, 369, 377, 747
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 867
TaqI TCGA 3 cut(s) 174, 423, 869
TaqII GACCGA 1 cut(s) 636
TasI AATT 5 cut(s) 223, 615, 641, 710, 758
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 492, 520, 728
Tru1I TTAA 4 cut(s) 609, 906, 980, 1063
Tru9I TTAA 4 cut(s) 609, 906, 980, 1063
TscAI CASTG 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 1002
TspMI CCCGGG 1 cut(s) 338
TspRI CASTG 1 cut(s) 545
VneI GTGCAC 1 cut(s) 840
XagI CCTNNNNNAGG 1 cut(s) 436
XapI RAATTY 1 cut(s) 641
XceI RCATGY 3 cut(s) 705, 806, 1018
XmaI CCCGGG 1 cut(s) 338
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.