Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Reverse (-)

189545 .. 191543

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAACCCAAACCATGGCTCATCTCCTTGTTCCTCCGATGACTGCCAATGCCATGGCTCATCTCCTTCCTCTCTCCTCTCCTTTATCCATCACTCTCTGCTTCTTTGCGTGGTTGCAAGCTTTCTTGGTCGTCCATGGCAATACTAATAACATCACCAATCCTTCTTCTTTCACCCCCATCAACCGCGATCTCTATCATTCCAGTGGGGATTTGATGGAAGAAATTAAAGCTCTCGTCTTTCGGCACCCAGACGAGCTCACTTTGGATACAATTAAATCTCGAAACAAGGGCTACTCTGCTGAGATCGCAATAGTTACCTATTGCCGGAGAAGGCAAGAGACTGATGACCAGCCAAAGTTACGGATCCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTTATTACATCCGAGCTTGCATTACGAATCCTATCAATCTTGAGTAAAGAACAGTTTCTACCCAACCTGGACCCAGCCTCCTTAGACAGTACCCTTGACAAGCTCTTGATAAAGGTGGTTCCAATGGAAAACTTAAATGGCCGTAGACTTGTTGAAGCAGGGGATCTCTGTGAGAGGAGAAATGGGAGGGGAGTTGATCCCAACCGTAATTGGAGCGTGGATTGGGGAAAAAAAGAGAAGGATTATGATCCATATGAGGAAAATCCTGGAACTGCTCCTTTCAGCGAGCCTGAAACTCAGATAATGCGGAAAGTTTCCATGTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

243

Amino Acids

27.42

Weight (kDa)

6.32

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M14	PF00246	75 - 239	6.3e-16	Zinc carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	187, 706
AclWI	GGATC	5 cut(s)	361, 374, 570, 590, 641
AcoI	YGGCCR	1 cut(s)	538
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	16, 327
AgsI	TTSAA	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	465, 664
AluBI	AGCT	6 cut(s)	122, 233, 259, 400, 415, 502
AluI	AGCT	6 cut(s)	122, 233, 259, 400, 415, 502
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	5 cut(s)	361, 374, 570, 590, 641
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	148, 166
AvaII	GGWCC	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	98, 188, 211
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	2 cut(s)	467, 666
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	467, 666
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	248, 368, 471, 519
BmrFI	CCNGG	2 cut(s)	467, 666
BpuEI	CTTGAG	1 cut(s)	460
BsaBI	GATNNNNATC	2 cut(s)	195, 645
BsaJI	CCNNGG	3 cut(s)	15, 54, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 327
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	2 cut(s)	195, 645
BseBI	CCWGG	2 cut(s)	467, 666
BseDI	CCNNGG	3 cut(s)	15, 54, 136
BseGI	GGATG	1 cut(s)	407
BseJI	GATNNNNATC	2 cut(s)	195, 645
BseLI	CCNNNNNNNGG	2 cut(s)	16, 327
BseMII	CTCAG	2 cut(s)	294, 710
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	67, 589
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	16, 327
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
Bsp19I	CCATGG	3 cut(s)	15, 54, 136
BspACI	CCGC	2 cut(s)	187, 706
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	295, 709
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	248, 368, 471, 519
BspPI	GGATC	5 cut(s)	361, 374, 570, 590, 641
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	15, 54, 136
BssMI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
BssT1I	CCWWGG	3 cut(s)	15, 54, 136
Bst2UI	CCWGG	2 cut(s)	467, 666
Bst4CI	ACNGT	3 cut(s)	453, 488, 605
BstC8I	GCNNGC	3 cut(s)	120, 417, 686
BstDEI	CTNAG	4 cut(s)	303, 374, 481, 696
BstDSI	CCRYGG	3 cut(s)	15, 54, 136
BstF5I	GGATG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	6 cut(s)	193, 309, 369, 565, 598, 649
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	467, 666
BstSCI	CCNGG	2 cut(s)	465, 664
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	366, 562
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	366, 562
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	540
BtgI	CCRYGG	3 cut(s)	15, 54, 136
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	120, 417, 686
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	5 cut(s)	16, 55, 137, 389, 718
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	303, 374, 481, 696
DpnI	GATC	6 cut(s)	192, 308, 368, 564, 597, 648
DpnII	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
EaeI	YGGCCR	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	15, 54, 136
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	465, 664
EcoT14I	CCWWGG	3 cut(s)	15, 54, 136
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	3 cut(s)	15, 54, 136
FaeI	CATG	5 cut(s)	19, 58, 140, 392, 721
FaiI	YATR	9 cut(s)	17, 56, 138, 390, 645, 652, 654, 719, 727
FatI	CATG	5 cut(s)	15, 54, 136, 388, 717
FauNDI	CATATG	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	386
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	5 cut(s)	19, 58, 140, 392, 721
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	148, 166
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	39, 412, 699
Hpy188III	TCNNGA	3 cut(s)	282, 439, 505
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	6 cut(s)	77, 174, 327, 380, 387, 631
HpyCH4III	ACNGT	3 cut(s)	453, 488, 605
HpyCH4V	TGCA	2 cut(s)	118, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	303, 374, 481, 696
Hsp92II	CATG	5 cut(s)	19, 58, 140, 392, 721
Kzo9I	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
LmnI	GCTCC	3 cut(s)	397, 612, 679
Lsp1109I	GCAGC	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	316, 360
MalI	GATC	6 cut(s)	192, 308, 368, 564, 597, 648
MboI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
MboII	GAAGA	2 cut(s)	159, 233
MflI	RGATCY	2 cut(s)	366, 562
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	225, 273, 607
MnlI	CCTC	7 cut(s)	45, 81, 88, 487, 567, 579, 649
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	3 cut(s)	228, 276, 533
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	467, 666
MvaI	CCWGG	2 cut(s)	467, 666
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	308
NcoI	CCATGG	3 cut(s)	15, 54, 136
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
NlaIII	CATG	5 cut(s)	19, 58, 140, 392, 721
NlaIV	GGNNCC	4 cut(s)	248, 368, 471, 519
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	465, 664
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	2 cut(s)	465, 664
PspN4I	GGNNCC	4 cut(s)	248, 368, 471, 519
PspPI	GGNCC	1 cut(s)	469
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
PsuI	RGATCY	2 cut(s)	366, 562
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	228, 276, 533
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	467, 666
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	124, 235, 261, 323, 402, 417, 468, 504, 516
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	225, 273, 607
SsiI	CCGC	2 cut(s)	187, 706
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	465, 664
StyI	CCWWGG	3 cut(s)	15, 54, 136
TaaI	ACNGT	3 cut(s)	453, 488, 605
TaqI	TCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	225, 273, 607
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	228, 276, 533
Tru9I	TTAA	3 cut(s)	228, 276, 533
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.