Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010419

Physical Location & Seq

Genomic Coordinates Forward (+)

4341912 .. 4343786

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAAGCTGTTGGCTAAACACAGGAAGACACCTATTTGATATTGACATCCCGGGGAAGATTACCTTCATTGAATCAAAGACTCTCACAGCAGGGCAGACTCCTACCATTGTGGATACAGAAGTTGGACGTATTGGCATTGGTATCTGTTATGACATTAGGTTTCCGGAACTAGCAATGATTTATGGAGCAAGAGGTGCTCACTTGATATGCTATCCTGGGGCTTTTAACATGACTACTGGACCGTTGCACTGGGAATTATTGCAGAGGGCAAGGGCTACAGATAACCAGCTATATGTAGCAACTTGTTCCCCTGCTCGGGATGCTGGAGCCGGTTATGTGGCATGGGGCCACTCCACCCTTGTTGGACCATTTGGAGAAGTACTGGCGACGACAGAACATGAAGAGGCAATAATCATAGCAGAGATTGATTATTCAATTCTTGAGCTTAGAAGGACAAACCTTCCCTTACTGAAGCAAAGACGAGGCGATCTTTACCAGTTGGTAGATGTTCAGAGGTTAAATCCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006107 GO:0006108 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050152 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

5.49

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	10 - 146	1.7e-34	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12040 AT5G12040
fragaria_vesca	FvH4_2g31270
malus_domestica	MD08G1069600.v1.1 MD15G1052400.v1.1 MD15G1052500.v1.1
prunus_persica	Prupe.1G406400_v2.0.a1
pyrus_communis	pycom08g05760 pycom15g05020
rosa_chinensis	RchiOBHm_Chr6g0311531
rosa_laevigata	RLG00000010396
rosa_multiflora	Rmu_sc0015790.1_g000009 Rmu_sc0026884.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157530
rosa_rugosa	Rorug06G0389400 Rorug06G0389500
rosa_samantha	Rh6AG504400 Rh6BG515000 Rh6CG520800 Rh6DG506800
rosa_wichuraiana	Rw6G043920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	318, 319
AgsI	TTSAA	2 cut(s)	74, 438
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	9, 292, 448
AluI	AGCT	3 cut(s)	9, 292, 448
Alw21I	GWGCWC	1 cut(s)	202
Ama87I	CYCGRG	2 cut(s)	52, 318
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	242, 349, 368
AsuC2I	CCSGG	2 cut(s)	53, 54
AvaI	CYCGRG	2 cut(s)	52, 318
AvaII	GGWCC	2 cut(s)	242, 368
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	53, 54
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	3 cut(s)	53, 54, 219
Bme18I	GGWCC	2 cut(s)	242, 368
BmeT110I	CYCGRG	2 cut(s)	52, 318
BmgT120I	GGNCC	3 cut(s)	242, 349, 368
BmiI	GGNNCC	2 cut(s)	331, 350
BmrFI	CCNGG	3 cut(s)	53, 54, 219
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	2 cut(s)	53, 54
BsaJI	CCNNGG	3 cut(s)	52, 53, 218
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 319
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	4 cut(s)	244, 257, 390, 499
Bse3DI	GCAATG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	52, 53, 218
BseGI	GGATG	2 cut(s)	48, 328
BseLI	CCNNNNNNNGG	2 cut(s)	318, 319
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	4 cut(s)	244, 257, 390, 499
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	2 cut(s)	52, 318
BsiSI	CCGG	3 cut(s)	53, 167, 333
BslI	CCNNNNNNNGG	2 cut(s)	318, 319
BsnI	GGCC	1 cut(s)	351
BsoBI	CYCGRG	2 cut(s)	52, 318
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	490
BspANI	GGCC	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	331, 350
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	4 cut(s)	244, 257, 390, 499
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	52, 53, 218
BssMI	GATC	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	48, 328
BstKTI	GATC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 323
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	51, 52, 217
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	48, 328
BtsIMutI	CAGTG	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	242, 349, 368
Cfr9I	CCCGGG	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	3 cut(s)	232, 345, 401
CviJI	RGCY	8 cut(s)	9, 16, 224, 278, 292, 332, 351, 448
CviKI_1	RGCY	8 cut(s)	9, 16, 224, 278, 292, 332, 351, 448
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	242, 368
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	2 cut(s)	52, 318
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	235, 348, 404
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	3 cut(s)	231, 344, 400
FokI	GGATG	2 cut(s)	35, 335
FspBI	CTAG	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	3 cut(s)	53, 167, 333
Hin1II	CATG	3 cut(s)	235, 348, 404
HinfI	GANTC	3 cut(s)	74, 82, 100
HpaII	CCGG	3 cut(s)	53, 167, 333
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	3 cut(s)	167, 320, 443
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	76, 447, 473
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	250, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 323
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	235, 348, 404
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	188, 329
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	130
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	3 cut(s)	39, 70, 416
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	257, 438
MlyI	GAGTC	2 cut(s)	76, 94
MmeI	TCCRAC	2 cut(s)	106, 346
MnlI	CCTC	5 cut(s)	188, 261, 400, 479, 510
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	2 cut(s)	228, 521
MspI	CCGG	3 cut(s)	53, 167, 333
MspR9I	CCNGG	3 cut(s)	53, 54, 219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	197, 323
NciI	CCSGG	2 cut(s)	53, 54
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	3 cut(s)	235, 348, 404
NlaIV	GGNNCC	2 cut(s)	331, 350
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	2 cut(s)	76, 94
PpsI	GAGTC	2 cut(s)	76, 94
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	331, 350
PspPI	GGNCC	3 cut(s)	242, 349, 368
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	228, 521
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	242, 349, 368
ScaI	AGTACT	1 cut(s)	384
SchI	GAGTC	2 cut(s)	76, 94
ScrFI	CCNGG	3 cut(s)	53, 54, 219
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	242, 368
SmaI	CCCGGG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	257, 438
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	51, 52, 217
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	133
TasI	AATT	2 cut(s)	257, 438
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	228, 521
Tru9I	TTAA	2 cut(s)	228, 521
TscAI	CASTG	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	58, 417
TspMI	CCCGGG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	242, 368
XmaI	CCCGGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.