Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026884.1

Orthogroup ID

OG0010419

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2399

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026884.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atacacctctttgatattgatatccctgggaagattacctttattgaatcaaagactcttacagcagggcaaactcctaccattgtggacacagaagttgggcgtattggcataggcatttgttatgacattaggttccaggaactagctatgatctatggagcaagaggtgctcacttgatatgctatcctggggcttttaacatgaccactgggccattgcattgggaattgttgcagagagcaagggctacagataaccagctatatgtggcaacttgttcacctgctcgagatgctggagctggttatgtggcatggggccactccacccttgtcggaccatttggagaagtgctggcaaccacagaacatgaagaggcaataatcatagctgaggttgattattcactccttgagcttagaagaacaaatctccctttactgaagcagcggcgaggtgatctttaccagttggtagatgttcagaggttgaattctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006107 GO:0006108 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050152 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

168

Amino Acids

18.63

Weight (kDa)

5.7

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12040 AT5G12040
fragaria_vesca	FvH4_2g31270
malus_domestica	MD08G1069600.v1.1 MD15G1052400.v1.1 MD15G1052500.v1.1
prunus_persica	Prupe.1G406400_v2.0.a1
pyrus_communis	pycom08g05760 pycom15g05020
rosa_chinensis	RchiOBHm_Chr6g0311531
rosa_laevigata	RLG00000010396
rosa_multiflora	Rmu_sc0015790.1_g000009 Rmu_sc0026884.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157530
rosa_rugosa	Rorug06G0389400 Rorug06G0389500
rosa_samantha	Rh6AG504400 Rh6BG515000 Rh6CG520800 Rh6DG506800
rosa_wichuraiana	Rw6G043920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AciI	CCGC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	47, 496
AjnI	CCWGG	3 cut(s)	25, 138, 190
AluBI	AGCT	5 cut(s)	149, 265, 305, 395, 421
AluI	AGCT	5 cut(s)	149, 265, 305, 395, 421
Alw21I	GWGCWC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	215, 322
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	215, 322, 341
AsuHPI	GGTGA	2 cut(s)	276, 473
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	175
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	463
BciT130I	CCWGG	3 cut(s)	27, 140, 192
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	452, 455
BlsI	GCNGC	2 cut(s)	453, 456
Bme1390I	CCNGG	3 cut(s)	27, 140, 192
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	3 cut(s)	215, 322, 341
BmiI	GGNNCC	2 cut(s)	137, 323
BmrFI	CCNGG	3 cut(s)	27, 140, 192
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	25, 26, 191
Bse1I	ACTGG	2 cut(s)	217, 472
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	3 cut(s)	27, 140, 192
BseDI	CCNNGG	3 cut(s)	25, 26, 191
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	217, 472
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	2 cut(s)	217, 324
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	291
BsnI	GGCC	2 cut(s)	217, 324
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	153, 463
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	2 cut(s)	217, 324
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	137, 323
BspMI	ACCTGC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	217, 472
BssECI	CCNNGG	3 cut(s)	25, 26, 191
BssMI	GATC	2 cut(s)	153, 463
Bst2UI	CCWGG	3 cut(s)	27, 140, 192
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	396, 422
BstKTI	GATC	2 cut(s)	156, 466
BstMBI	GATC	2 cut(s)	153, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 296
BstNI	CCWGG	3 cut(s)	27, 140, 192
BstSCI	CCNGG	3 cut(s)	25, 138, 190
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	217, 324
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	215, 322, 341
CviAII	CATG	3 cut(s)	205, 318, 374
CviJI	RGCY	9 cut(s)	149, 197, 217, 251, 265, 305, 324, 395, 421
CviKI_1	RGCY	9 cut(s)	149, 197, 217, 251, 265, 305, 324, 395, 421
DdeI	CTNAG	2 cut(s)	396, 422
DpnI	GATC	2 cut(s)	155, 465
DpnII	GATC	2 cut(s)	153, 463
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	25, 138, 190
EcoRV	GATATC	1 cut(s)	22
FaeI	CATG	3 cut(s)	208, 321, 377
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	3 cut(s)	204, 317, 373
Fnu4HI	GCNGC	2 cut(s)	452, 455
Fsp4HI	GCNGC	2 cut(s)	452, 455
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	452, 455
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	217, 324
Hin1II	CATG	3 cut(s)	208, 321, 377
HinfI	GANTC	2 cut(s)	47, 55
HphI	GGTGA	2 cut(s)	276, 473
Hpy166II	GTNNAC	2 cut(s)	88, 284
Hpy188I	TCNGA	2 cut(s)	341, 489
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	88, 284
HpyCH4V	TGCA	2 cut(s)	223, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 296
HpyF3I	CTNAG	2 cut(s)	396, 422
Hsp92II	CATG	3 cut(s)	208, 321, 377
Kzo9I	GATC	2 cut(s)	153, 463
LmnI	GCTCC	2 cut(s)	161, 302
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	146
MalI	GATC	2 cut(s)	155, 465
MboI	GATC	2 cut(s)	153, 463
MboII	GAAGA	3 cut(s)	43, 389, 438
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	230, 496
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	6 cut(s)	17, 161, 373, 391, 452, 483
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	27, 140, 192
MvaI	CCWGG	3 cut(s)	27, 140, 192
MwoI	GCNNNNNNNGC	2 cut(s)	170, 296
NdeII	GATC	2 cut(s)	153, 463
NlaIII	CATG	3 cut(s)	208, 321, 377
NlaIV	GGNNCC	2 cut(s)	137, 323
PaeR7I	CTCGAG	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	453, 456
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	3 cut(s)	25, 138, 190
PspGI	CCWGG	3 cut(s)	25, 138, 190
PspN4I	GGNNCC	2 cut(s)	137, 323
PspPI	GGNCC	3 cut(s)	215, 322, 341
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	452, 455
Sau3AI	GATC	2 cut(s)	153, 463
Sau96I	GGNCC	3 cut(s)	215, 322, 341
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	27, 140, 192
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	2 cut(s)	291, 416
SmoI	CTYRAG	2 cut(s)	291, 416
Sse9I	AATT	2 cut(s)	230, 496
SsiI	CCGC	1 cut(s)	454
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	3 cut(s)	25, 138, 190
TaqI	TCGA	1 cut(s)	292
TasI	AATT	2 cut(s)	230, 496
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.