Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015790.1

Orthogroup ID

OG0010419

Physical Location & Seq

Genomic Coordinates Forward (+)

37920 .. 40208

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015790.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgaatgcttcagcgttagaggacgtaggtaacaaagctcatggggatctacatgtatcacagatacacctctttgatattgatatccctgggaagattacctttattgaatcaaagactcttacagcagggcaaactcctaccattgtggacacagaagttgggcgtattggcataggcatttgttatgacattaggttccaggaactagctatgatctatggagcaagaggtgctcacttgatatgctatcctggggcttttaacatgaccactgggccattgcattgggaattgttgcagagagcaagggctacagataaccagctatatgtggcaacttgttcacctgctcgagatgccggagctggttatgtggcatggggccactccacccttgtcggaccatttggagaagtgctggcaactacagaacatgaagaggcaataatcatagctgaggttgattattcactccttgagcttagaagaacaaatctccctttactgaagcagcggcgaggtgatctttaccagttggtagatgttcagaggttgaattctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006107 GO:0006108 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050152 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

189

Amino Acids

20.8

Weight (kDa)

5.59

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12040 AT5G12040
fragaria_vesca	FvH4_2g31270
malus_domestica	MD08G1069600.v1.1 MD15G1052400.v1.1 MD15G1052500.v1.1
prunus_persica	Prupe.1G406400_v2.0.a1
pyrus_communis	pycom08g05760 pycom15g05020
rosa_chinensis	RchiOBHm_Chr6g0311531
rosa_laevigata	RLG00000010396
rosa_multiflora	Rmu_sc0015790.1_g000009 Rmu_sc0026884.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157530
rosa_rugosa	Rorug06G0389400 Rorug06G0389500
rosa_samantha	Rh6AG504400 Rh6BG515000 Rh6CG520800 Rh6DG506800
rosa_wichuraiana	Rw6G043920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	110, 559
AjnI	CCWGG	3 cut(s)	88, 201, 253
AluBI	AGCT	6 cut(s)	38, 212, 328, 368, 458, 484
AluI	AGCT	6 cut(s)	38, 212, 328, 368, 458, 484
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	2 cut(s)	278, 385
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	559
AspS9I	GGNCC	3 cut(s)	278, 385, 404
AsuHPI	GGTGA	2 cut(s)	339, 536
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	526
BciT130I	CCWGG	3 cut(s)	90, 203, 255
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	2 cut(s)	315, 429
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	515, 518
BlsI	GCNGC	2 cut(s)	516, 519
Bme1390I	CCNGG	3 cut(s)	90, 203, 255
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	3 cut(s)	278, 385, 404
BmiI	GGNNCC	2 cut(s)	200, 386
BmrFI	CCNGG	3 cut(s)	90, 203, 255
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	88, 89, 254
Bse1I	ACTGG	2 cut(s)	280, 535
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	90, 203, 255
BseDI	CCNNGG	3 cut(s)	88, 89, 254
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	280, 535
BseXI	GCAGC	1 cut(s)	526
BshFI	GGCC	2 cut(s)	280, 387
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	280, 387
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	46, 216, 526
BspACI	CCGC	1 cut(s)	517
BspANI	GGCC	2 cut(s)	280, 387
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	200, 386
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	280, 535
BssECI	CCNNGG	3 cut(s)	88, 89, 254
BssMI	GATC	3 cut(s)	46, 216, 526
Bst2UI	CCWGG	3 cut(s)	90, 203, 255
Bst6I	CTCTTC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	459, 485
BstKTI	GATC	3 cut(s)	49, 219, 529
BstMBI	GATC	3 cut(s)	46, 216, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 359
BstNI	CCWGG	3 cut(s)	90, 203, 255
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	3 cut(s)	88, 201, 253
BstSFI	CTRYAG	2 cut(s)	315, 429
BstV1I	GCAGC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	280, 387
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	278, 385, 404
CviAII	CATG	5 cut(s)	41, 53, 268, 381, 437
DdeI	CTNAG	2 cut(s)	459, 485
DpnI	GATC	3 cut(s)	48, 218, 528
DpnII	GATC	3 cut(s)	46, 216, 526
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	3 cut(s)	88, 201, 253
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	5 cut(s)	44, 56, 271, 384, 440
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	5 cut(s)	40, 52, 267, 380, 436
Fnu4HI	GCNGC	2 cut(s)	515, 518
Fsp4HI	GCNGC	2 cut(s)	515, 518
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	515, 518
HaeIII	GGCC	2 cut(s)	280, 387
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	5 cut(s)	44, 56, 271, 384, 440
HinfI	GANTC	2 cut(s)	110, 118
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	2 cut(s)	339, 536
Hpy166II	GTNNAC	2 cut(s)	151, 347
Hpy188I	TCNGA	2 cut(s)	404, 552
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	2 cut(s)	151, 347
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	286, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 359
HpyF3I	CTNAG	2 cut(s)	459, 485
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	44, 56, 271, 384, 440
Kzo9I	GATC	3 cut(s)	46, 216, 526
LmnI	GCTCC	2 cut(s)	224, 365
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	48, 218, 528
MboI	GATC	3 cut(s)	46, 216, 526
MboII	GAAGA	3 cut(s)	106, 452, 501
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	293, 559
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	13, 80, 224, 436, 454, 515, 546
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	3 cut(s)	90, 203, 255
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	3 cut(s)	90, 203, 255
MwoI	GCNNNNNNNGC	2 cut(s)	233, 359
NdeII	GATC	3 cut(s)	46, 216, 526
NlaIII	CATG	5 cut(s)	44, 56, 271, 384, 440
NlaIV	GGNNCC	2 cut(s)	200, 386
NspI	RCATGY	1 cut(s)	56
PaeR7I	CTCGAG	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	358
PasI	CCCWGGG	1 cut(s)	89
PciI	ACATGT	1 cut(s)	52
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	516, 519
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	52
Psp6I	CCWGG	3 cut(s)	88, 201, 253
PspGI	CCWGG	3 cut(s)	88, 201, 253
PspN4I	GGNNCC	2 cut(s)	200, 386
PspPI	GGNCC	3 cut(s)	278, 385, 404
PsuI	RGATCY	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	515, 518
Sau3AI	GATC	3 cut(s)	46, 216, 526
Sau96I	GGNCC	3 cut(s)	278, 385, 404
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	3 cut(s)	90, 203, 255
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	2 cut(s)	315, 429
Sfr274I	CTCGAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	404
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	354, 479
SmoI	CTYRAG	2 cut(s)	354, 479
Sse9I	AATT	2 cut(s)	293, 559
SsiI	CCGC	1 cut(s)	517
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	88, 201, 253
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	293, 559
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	17, 453
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	354
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.