Casein Kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25760 AT2G25760 |
| fragaria_vesca | FvH4_2g35440 FvH4_2g35440 FvH4_6g32280 |
| malus_domestica | MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1 |
| prunus_persica | Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1 |
| pyrus_communis | pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440 |
| rosa_chinensis | RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451 |
| rosa_laevigata | RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857 |
| rosa_multiflora | Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00104970 Rroxscaffold_7G00161760 |
| rosa_rugosa | Rorug02G0361500 Rorug06G0349500 Rorug06G0349600 |
| rosa_samantha | Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500 |
| rosa_wichuraiana | Rw2G033800 Rw6G040240 Rw7G007580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 555 |
| AccB1I | GGYRCC | 2 cut(s) | 538, 1769 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 816, 1792 |
| AccI | GTMKAC | 4 cut(s) | 369, 424, 843, 1335 |
| AccII | CGCG | 1 cut(s) | 1767 |
| AcoI | YGGCCR | 3 cut(s) | 283, 1041, 1257 |
| AcsI | RAATTY | 2 cut(s) | 467, 1111 |
| AcuI | CTGAAG | 1 cut(s) | 1480 |
| AdeI | CACNNNGTG | 1 cut(s) | 816 |
| AfaI | GTAC | 3 cut(s) | 102, 272, 720 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 87, 192, 816, 992, 1792, 1820 |
| AgsI | TTSAA | 8 cut(s) | 224, 238, 466, 653, 828, 1117, 1458, 1681 |
| AjiI | CACGTC | 1 cut(s) | 1860 |
| AjnI | CCWGG | 5 cut(s) | 348, 442, 760, 812, 1785 |
| Alw21I | GWGCWC | 1 cut(s) | 1216 |
| Ama87I | CYCGRG | 1 cut(s) | 338 |
| ApeKI | GCWGC | 5 cut(s) | 10, 308, 326, 1868, 1893 |
| ApoI | RAATTY | 2 cut(s) | 467, 1111 |
| AseI | ATTAAT | 2 cut(s) | 153, 1689 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1671, 1710, 1824 |
| AspLEI | GCGC | 1 cut(s) | 326 |
| AsuC2I | CCSGG | 3 cut(s) | 29, 88, 365 |
| AsuHPI | GGTGA | 4 cut(s) | 229, 263, 598, 1120 |
| AvaI | CYCGRG | 1 cut(s) | 338 |
| AvaII | GGWCC | 5 cut(s) | 212, 302, 346, 503, 1632 |
| BaeGI | GKGCMC | 1 cut(s) | 1504 |
| BalI | TGGCCA | 2 cut(s) | 1043, 1259 |
| BanI | GGYRCC | 2 cut(s) | 538, 1769 |
| BanII | GRGCYC | 1 cut(s) | 1471 |
| Bbv12I | GWGCWC | 1 cut(s) | 1216 |
| BbvCI | CCTCAGC | 2 cut(s) | 771, 1077 |
| BbvI | GCAGC | 3 cut(s) | 320, 338, 1880 |
| BccI | CCATC | 7 cut(s) | 583, 637, 1033, 1157, 1202, 1418, 1740 |
| BciT130I | CCWGG | 5 cut(s) | 350, 444, 762, 814, 1787 |
| BclI | TGATCA | 1 cut(s) | 850 |
| BcnI | CCSGG | 3 cut(s) | 29, 88, 365 |
| BfaI | CTAG | 5 cut(s) | 180, 606, 708, 947, 1799 |
| BfmI | CTRYAG | 1 cut(s) | 1866 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 291 |
| BisI | GCNGC | 8 cut(s) | 11, 280, 283, 286, 309, 327, 1869, 1894 |
| BlsI | GCNGC | 8 cut(s) | 12, 281, 284, 287, 310, 328, 1870, 1895 |
| Bme1390I | CCNGG | 8 cut(s) | 29, 88, 350, 365, 444, 762, 814, 1787 |
| Bme18I | GGWCC | 5 cut(s) | 212, 302, 346, 503, 1632 |
| BmeT110I | CYCGRG | 1 cut(s) | 338 |
| BmgBI | CACGTC | 1 cut(s) | 1860 |
| BmrFI | CCNGG | 8 cut(s) | 29, 88, 350, 365, 444, 762, 814, 1787 |
| BmsI | GCATC | 4 cut(s) | 690, 1299, 1471, 1863 |
| BpmI | CTGGAG | 1 cut(s) | 465 |
| Bpu10I | CCTNAGC | 3 cut(s) | 6, 771, 1077 |
| BpuMI | CCSGG | 3 cut(s) | 29, 88, 365 |
| Bsa29I | ATCGAT | 1 cut(s) | 1885 |
| BsaWI | WCCGGW | 1 cut(s) | 214 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 87, 192, 816, 992, 1792, 1820 |
| Bse118I | RCCGGY | 1 cut(s) | 185 |
| Bse1I | ACTGG | 3 cut(s) | 835, 922, 1495 |
| Bse3DI | GCAATG | 1 cut(s) | 1731 |
| BseBI | CCWGG | 5 cut(s) | 350, 444, 762, 814, 1787 |
| BseCI | ATCGAT | 1 cut(s) | 1885 |
| BseGI | GGATG | 7 cut(s) | 497, 622, 733, 1279, 1314, 1486, 1885 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 87, 192, 816, 992, 1792, 1820 |
| BseMI | GCAATG | 1 cut(s) | 1731 |
| BseMII | CTCAG | 4 cut(s) | 729, 762, 1091, 1229 |
| BseNI | ACTGG | 3 cut(s) | 835, 922, 1495 |
| BseRI | GAGGAG | 3 cut(s) | 211, 257, 788 |
| BseSI | GKGCMC | 1 cut(s) | 1504 |
| BseX3I | CGGCCG | 1 cut(s) | 283 |
| BseXI | GCAGC | 3 cut(s) | 320, 338, 1880 |
| BseYI | CCCAGC | 2 cut(s) | 1398, 1736 |
| Bsh1236I | CGCG | 1 cut(s) | 1767 |
| Bsh1285I | CGRYCG | 1 cut(s) | 286 |
| BshNI | GGYRCC | 2 cut(s) | 538, 1769 |
| BshVI | ATCGAT | 1 cut(s) | 1885 |
| BsiEI | CGRYCG | 1 cut(s) | 286 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1216 |
| BsiHKCI | CYCGRG | 1 cut(s) | 338 |
| BsiSI | CCGG | 6 cut(s) | 28, 88, 186, 215, 365, 1773 |
| BslFI | GGGAC | 4 cut(s) | 288, 1574, 1645, 1747 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 87, 192, 816, 992, 1792, 1820 |
| BsmFI | GGGAC | 4 cut(s) | 288, 1574, 1645, 1747 |
| BsmI | GAATGC | 1 cut(s) | 1824 |
| BsoBI | CYCGRG | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1216, 1471, 1504 |
| Bsp1407I | TGTACA | 1 cut(s) | 718 |
| Bsp143I | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| Bsp19I | CCATGG | 3 cut(s) | 261, 986, 1260 |
| BspCNI | CTCAG | 4 cut(s) | 730, 763, 1090, 1228 |
| BspDI | ATCGAT | 1 cut(s) | 1885 |
| BspFNI | CGCG | 1 cut(s) | 1767 |
| BspMAI | CTGCAG | 1 cut(s) | 1870 |
| BspT107I | GGYRCC | 2 cut(s) | 538, 1769 |
| BsrDI | GCAATG | 1 cut(s) | 1731 |
| BsrFI | RCCGGY | 1 cut(s) | 185 |
| BsrGI | TGTACA | 1 cut(s) | 718 |
| BsrI | ACTGG | 3 cut(s) | 835, 922, 1495 |
| BssAI | RCCGGY | 1 cut(s) | 185 |
| BssMI | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| BssNAI | GTATAC | 2 cut(s) | 370, 1336 |
| BssT1I | CCWWGG | 4 cut(s) | 261, 799, 986, 1260 |
| Bst1107I | GTATAC | 2 cut(s) | 370, 1336 |
| Bst2UI | CCWGG | 5 cut(s) | 350, 444, 762, 814, 1787 |
| Bst4CI | ACNGT | 1 cut(s) | 880 |
| Bst6I | CTCTTC | 1 cut(s) | 1263 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 668 |
| BstAUI | TGTACA | 1 cut(s) | 718 |
| BstC8I | GCNNGC | 9 cut(s) | 187, 191, 439, 567, 635, 836, 900, 1314, 1486 |
| BstDEI | CTNAG | 6 cut(s) | 6, 738, 771, 1077, 1215, 1905 |
| BstDSI | CCRYGG | 5 cut(s) | 17, 261, 986, 1260, 1765 |
| BstEII | GGTNACC | 1 cut(s) | 1847 |
| BstF5I | GGATG | 7 cut(s) | 497, 622, 733, 1279, 1314, 1486, 1885 |
| BstFNI | CGCG | 1 cut(s) | 1767 |
| BstHHI | GCGC | 1 cut(s) | 326 |
| BstKTI | GATC | 4 cut(s) | 72, 853, 1885, 1889 |
| BstMBI | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| BstMCI | CGRYCG | 1 cut(s) | 286 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 285, 291, 668, 1256, 1357, 1399 |
| BstNI | CCWGG | 5 cut(s) | 350, 444, 762, 814, 1787 |
| BstNSI | RCATGY | 3 cut(s) | 666, 842, 902 |
| BstPI | GGTNACC | 1 cut(s) | 1847 |
| BstSCI | CCNGG | 8 cut(s) | 27, 86, 348, 363, 442, 760, 812, 1785 |
| BstSFI | CTRYAG | 1 cut(s) | 1866 |
| BstSLI | GKGCMC | 1 cut(s) | 1504 |
| BstUI | CGCG | 1 cut(s) | 1767 |
| BstV1I | GCAGC | 3 cut(s) | 320, 338, 1880 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 356 |
| BstZ17I | GTATAC | 2 cut(s) | 370, 1336 |
| BstZI | CGGCCG | 1 cut(s) | 283 |
| Bsu15I | ATCGAT | 1 cut(s) | 1885 |
| BsuTUI | ATCGAT | 1 cut(s) | 1885 |
| BtgI | CCRYGG | 5 cut(s) | 17, 261, 986, 1260, 1765 |
| BtrI | CACGTC | 1 cut(s) | 1860 |
| BtsCI | GGATG | 7 cut(s) | 497, 622, 733, 1279, 1314, 1486, 1885 |
| BtsI | GCAGTG | 3 cut(s) | 295, 1447, 1562 |
| BtsIMutI | CAGTG | 7 cut(s) | 295, 885, 1447, 1488, 1504, 1562, 1585 |
| Cac8I | GCNNGC | 9 cut(s) | 187, 191, 439, 567, 635, 836, 900, 1314, 1486 |
| CciNI | GCGGCCGC | 1 cut(s) | 283 |
| CfoI | GCGC | 1 cut(s) | 326 |
| Cfr10I | RCCGGY | 1 cut(s) | 185 |
| Cfr42I | CCGCGG | 1 cut(s) | 1768 |
| ClaI | ATCGAT | 1 cut(s) | 1885 |
| CpoI | CGGWCCG | 1 cut(s) | 212 |
| CseI | GACGC | 1 cut(s) | 435 |
| CsiI | ACCWGGT | 2 cut(s) | 812, 1785 |
| Csp6I | GTAC | 3 cut(s) | 101, 271, 719 |
| CspI | CGGWCCG | 1 cut(s) | 212 |
| CviQI | GTAC | 3 cut(s) | 101, 271, 719 |
| DdeI | CTNAG | 6 cut(s) | 6, 738, 771, 1077, 1215, 1905 |
| DpnI | GATC | 4 cut(s) | 71, 852, 1884, 1888 |
| DpnII | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| DraIII | CACNNNGTG | 1 cut(s) | 816 |
| EaeI | YGGCCR | 3 cut(s) | 283, 1041, 1257 |
| EagI | CGGCCG | 1 cut(s) | 283 |
| Eam1104I | CTCTTC | 1 cut(s) | 1263 |
| EarI | CTCTTC | 1 cut(s) | 1263 |
| EclXI | CGGCCG | 1 cut(s) | 283 |
| Eco130I | CCWWGG | 4 cut(s) | 261, 799, 986, 1260 |
| Eco24I | GRGCYC | 1 cut(s) | 1471 |
| Eco32I | GATATC | 2 cut(s) | 998, 1367 |
| Eco47I | GGWCC | 5 cut(s) | 212, 302, 346, 503, 1632 |
| Eco52I | CGGCCG | 1 cut(s) | 283 |
| Eco57I | CTGAAG | 1 cut(s) | 1480 |
| Eco88I | CYCGRG | 1 cut(s) | 338 |
| Eco91I | GGTNACC | 1 cut(s) | 1847 |
| EcoO109I | RGGNCCY | 2 cut(s) | 302, 1632 |
| EcoO65I | GGTNACC | 1 cut(s) | 1847 |
| EcoRII | CCWGG | 5 cut(s) | 348, 442, 760, 812, 1785 |
| EcoRV | GATATC | 2 cut(s) | 998, 1367 |
| EcoT14I | CCWWGG | 4 cut(s) | 261, 799, 986, 1260 |
| EcoT38I | GRGCYC | 1 cut(s) | 1471 |
| ErhI | CCWWGG | 4 cut(s) | 261, 799, 986, 1260 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 386, 418, 1005, 1037 |
| FaqI | GGGAC | 4 cut(s) | 288, 1574, 1645, 1747 |
| FauI | CCCGC | 4 cut(s) | 69, 90, 313, 1772 |
| FbaI | TGATCA | 1 cut(s) | 850 |
| FblI | GTMKAC | 4 cut(s) | 369, 424, 843, 1335 |
| Fnu4HI | GCNGC | 8 cut(s) | 11, 280, 283, 286, 309, 327, 1869, 1894 |
| FokI | GGATG | 7 cut(s) | 504, 629, 740, 1286, 1321, 1493, 1892 |
| FriOI | GRGCYC | 1 cut(s) | 1471 |
| Fsp4HI | GCNGC | 8 cut(s) | 11, 280, 283, 286, 309, 327, 1869, 1894 |
| FspBI | CTAG | 5 cut(s) | 180, 606, 708, 947, 1799 |
| GlaI | GCGC | 1 cut(s) | 325 |
| GluI | GCNGC | 8 cut(s) | 11, 280, 283, 286, 309, 327, 1869, 1894 |
| GsaI | CCCAGC | 2 cut(s) | 1402, 1740 |
| GsuI | CTGGAG | 1 cut(s) | 465 |
| HapII | CCGG | 6 cut(s) | 28, 88, 186, 215, 365, 1773 |
| HgaI | GACGC | 1 cut(s) | 435 |
| HhaI | GCGC | 1 cut(s) | 326 |
| Hin6I | GCGC | 1 cut(s) | 324 |
| HinP1I | GCGC | 1 cut(s) | 324 |
| HincII | GTYRAC | 4 cut(s) | 425, 796, 844, 1863 |
| HindII | GTYRAC | 4 cut(s) | 425, 796, 844, 1863 |
| HindIII | AAGCTT | 1 cut(s) | 1220 |
| HinfI | GANTC | 5 cut(s) | 106, 824, 941, 1297, 1667 |
| HpaII | CCGG | 6 cut(s) | 28, 88, 186, 215, 365, 1773 |
| HphI | GGTGA | 4 cut(s) | 229, 263, 598, 1120 |
| Hpy166II | GTNNAC | 7 cut(s) | 370, 425, 506, 796, 844, 1336, 1863 |
| Hpy188I | TCNGA | 6 cut(s) | 37, 138, 162, 1088, 1218, 1783 |
| Hpy188III | TCNNGA | 5 cut(s) | 76, 338, 622, 708, 860 |
| Hpy8I | GTNNAC | 7 cut(s) | 370, 425, 506, 796, 844, 1336, 1863 |
| Hpy99I | CGWCG | 1 cut(s) | 429 |
| HpyAV | CCTTC | 8 cut(s) | 85, 157, 166, 337, 388, 1700, 1814, 1827 |
| HpyCH4III | ACNGT | 1 cut(s) | 880 |
| HpyCH4IV | ACGT | 2 cut(s) | 856, 1859 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 285, 291, 668, 1256, 1357, 1399 |
| HpyF3I | CTNAG | 6 cut(s) | 6, 738, 771, 1077, 1215, 1905 |
| HpySE526I | ACGT | 2 cut(s) | 856, 1859 |
| HspAI | GCGC | 1 cut(s) | 324 |
| KflI | GGGWCCC | 2 cut(s) | 302, 1632 |
| KroI | GCCGGC | 1 cut(s) | 185 |
| KroNI | GCCGGC | 1 cut(s) | 187 |
| Ksp22I | TGATCA | 1 cut(s) | 850 |
| KspI | CCGCGG | 1 cut(s) | 1768 |
| Kzo9I | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| LmnI | GCTCC | 5 cut(s) | 334, 446, 1398, 1552, 1592 |
| Lsp1109I | GCAGC | 3 cut(s) | 320, 338, 1880 |
| LweI | GCATC | 4 cut(s) | 690, 1299, 1471, 1863 |
| MabI | ACCWGGT | 2 cut(s) | 812, 1785 |
| MaeI | CTAG | 5 cut(s) | 180, 606, 708, 947, 1799 |
| MaeII | ACGT | 2 cut(s) | 856, 1859 |
| MaeIII | GTNAC | 2 cut(s) | 1717, 1847 |
| MalI | GATC | 4 cut(s) | 71, 852, 1884, 1888 |
| MboI | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| MfeI | CAATTG | 1 cut(s) | 648 |
| MhlI | GDGCHC | 3 cut(s) | 1216, 1471, 1504 |
| MlsI | TGGCCA | 2 cut(s) | 1043, 1259 |
| MluCI | AATT | 8 cut(s) | 386, 467, 496, 648, 1091, 1111, 1167, 1567 |
| MluNI | TGGCCA | 2 cut(s) | 1043, 1259 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MmeI | TCCRAC | 2 cut(s) | 1111, 1216 |
| Mox20I | TGGCCA | 2 cut(s) | 1043, 1259 |
| MroNI | GCCGGC | 1 cut(s) | 185 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1671, 1710, 1824 |
| MscI | TGGCCA | 2 cut(s) | 1043, 1259 |
| MseI | TTAA | 2 cut(s) | 153, 1689 |
| MslI | CAYNNNNRTG | 3 cut(s) | 587, 726, 1374 |
| Msp20I | TGGCCA | 2 cut(s) | 1043, 1259 |
| MspA1I | CMGCKG | 2 cut(s) | 311, 1767 |
| MspI | CCGG | 6 cut(s) | 28, 88, 186, 215, 365, 1773 |
| MspR9I | CCNGG | 8 cut(s) | 29, 88, 350, 365, 444, 762, 814, 1787 |
| MunI | CAATTG | 1 cut(s) | 648 |
| Mva1269I | GAATGC | 1 cut(s) | 1824 |
| MvaI | CCWGG | 5 cut(s) | 350, 444, 762, 814, 1787 |
| MvnI | CGCG | 1 cut(s) | 1767 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 285, 291, 668, 1256, 1357, 1399 |
| NaeI | GCCGGC | 1 cut(s) | 187 |
| NciI | CCSGG | 3 cut(s) | 29, 88, 365 |
| NcoI | CCATGG | 3 cut(s) | 261, 986, 1260 |
| NdeII | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| NgoMIV | GCCGGC | 1 cut(s) | 185 |
| NmeAIII | GCCGAG | 2 cut(s) | 88, 229 |
| NotI | GCGGCCGC | 1 cut(s) | 283 |
| NspI | RCATGY | 3 cut(s) | 666, 842, 902 |
| PaeI | GCATGC | 1 cut(s) | 902 |
| PctI | GAATGC | 1 cut(s) | 1824 |
| PdiI | GCCGGC | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1671, 1710, 1824 |
| PfeI | GAWTC | 4 cut(s) | 824, 941, 1297, 1667 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 816, 1792 |
| PkrI | GCNGC | 8 cut(s) | 12, 281, 284, 287, 310, 328, 1870, 1895 |
| PleI | GAGTC | 1 cut(s) | 100 |
| PpsI | GAGTC | 1 cut(s) | 100 |
| PpuMI | RGGWCCY | 2 cut(s) | 302, 1632 |
| PshBI | ATTAAT | 2 cut(s) | 153, 1689 |
| PsiI | TTATAA | 1 cut(s) | 555 |
| Psp5II | RGGWCCY | 2 cut(s) | 302, 1632 |
| Psp6I | CCWGG | 5 cut(s) | 348, 442, 760, 812, 1785 |
| PspEI | GGTNACC | 1 cut(s) | 1847 |
| PspFI | CCCAGC | 2 cut(s) | 1398, 1736 |
| PspGI | CCWGG | 5 cut(s) | 348, 442, 760, 812, 1785 |
| PspPPI | RGGWCCY | 2 cut(s) | 302, 1632 |
| PstI | CTGCAG | 1 cut(s) | 1870 |
| PvuII | CAGCTG | 1 cut(s) | 311 |
| RsaI | GTAC | 3 cut(s) | 102, 272, 720 |
| RsaNI | GTAC | 3 cut(s) | 101, 271, 719 |
| RseI | CAYNNNNRTG | 3 cut(s) | 587, 726, 1374 |
| Rsr2I | CGGWCCG | 1 cut(s) | 212 |
| RsrII | CGGWCCG | 1 cut(s) | 212 |
| SacII | CCGCGG | 1 cut(s) | 1768 |
| SalI | GTCGAC | 2 cut(s) | 423, 842 |
| SaqAI | TTAA | 2 cut(s) | 153, 1689 |
| SatI | GCNGC | 8 cut(s) | 11, 280, 283, 286, 309, 327, 1869, 1894 |
| Sau3AI | GATC | 4 cut(s) | 69, 850, 1882, 1886 |
| SchI | GAGTC | 1 cut(s) | 100 |
| ScrFI | CCNGG | 8 cut(s) | 29, 88, 350, 365, 444, 762, 814, 1787 |
| SduI | GDGCHC | 3 cut(s) | 1216, 1471, 1504 |
| SexAI | ACCWGGT | 2 cut(s) | 812, 1785 |
| SfaNI | GCATC | 4 cut(s) | 690, 1299, 1471, 1863 |
| SfcI | CTRYAG | 1 cut(s) | 1866 |
| Sfr303I | CCGCGG | 1 cut(s) | 1768 |
| SgrBI | CCGCGG | 1 cut(s) | 1768 |
| SinI | GGWCC | 5 cut(s) | 212, 302, 346, 503, 1632 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 587, 726, 1374 |
| SphI | GCATGC | 1 cut(s) | 902 |
| Sse9I | AATT | 8 cut(s) | 386, 467, 496, 648, 1091, 1111, 1167, 1567 |
| SspMI | CTAG | 5 cut(s) | 180, 606, 708, 947, 1799 |
| StyD4I | CCNGG | 8 cut(s) | 27, 86, 348, 363, 442, 760, 812, 1785 |
| StyI | CCWWGG | 4 cut(s) | 261, 799, 986, 1260 |
| TaaI | ACNGT | 1 cut(s) | 880 |
| TaiI | ACGT | 2 cut(s) | 859, 1862 |
| TaqI | TCGA | 4 cut(s) | 424, 843, 1831, 1885 |
| TasI | AATT | 8 cut(s) | 386, 467, 496, 648, 1091, 1111, 1167, 1567 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TauI | GCSGC | 3 cut(s) | 282, 285, 288 |
| TfiI | GAWTC | 4 cut(s) | 824, 941, 1297, 1667 |
| Tru1I | TTAA | 2 cut(s) | 153, 1689 |
| Tru9I | TTAA | 2 cut(s) | 153, 1689 |
| TscAI | CASTG | 7 cut(s) | 295, 885, 1447, 1495, 1504, 1562, 1585 |
| TseI | GCWGC | 5 cut(s) | 10, 308, 326, 1868, 1893 |
| TspDTI | ATGAA | 6 cut(s) | 539, 1370, 1434, 1527, 1703, 1817 |
| TspGWI | ACGGA | 2 cut(s) | 34, 118 |
| TspRI | CASTG | 7 cut(s) | 295, 885, 1447, 1495, 1504, 1562, 1585 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 816, 1792 |
| VpaK11BI | GGWCC | 5 cut(s) | 212, 302, 346, 503, 1632 |
| VspI | ATTAAT | 2 cut(s) | 153, 1689 |
| XapI | RAATTY | 2 cut(s) | 467, 1111 |
| XbaI | TCTAGA | 1 cut(s) | 707 |
| XceI | RCATGY | 3 cut(s) | 666, 842, 902 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 513 |
| XmiI | GTMKAC | 4 cut(s) | 369, 424, 843, 1335 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1671, 1710, 1824 |
| XspI | CTAG | 5 cut(s) | 180, 606, 708, 947, 1799 |