Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Reverse (-)

34704533 .. 34705216

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATACCGGTAAGTTGGTGCTTGAGCTTCAACCCTAACGCTAAGGAAGCCAAGAATGGGGAGCACCACAAGGGCCATGAACAGATTAGATTAGTCACCGGAAACGCTGCACCACGAGTTCCGGAGCGCACGAACCCAATCGCTGGGCTCGATAGTGACCTTCCCGCCGTTCGAGTCTTCGACGCGCTGACGGTGGAGTTCGCCAGACTCGTGCTAAGCAGCTCGAACTTGTGCCCGACGGTGTCGGAGCCGCCGCGCTCCAGCTACCCTCGAGGCAGCCCCAGGGCTTCCACGTGCCGTCTTCCGGTCTCAGGAGTCAGGATCGATCCAAGGCTGGAAGAAGAAGAAGCTTACCCAGATTCCAAAGGCGGCCCGCGTTCTCTGCGATCCGGGGACCACTTCTTATTGGTGCTCGCGGCGGCGGTTCCTTCCTCTAGATCGGCGGCGACGGTGGTTCTTCCTTCTCCATTGAATCTCTGGGATTCTGGGCTTCTAGCGTCTCTTGCTTTTTTCTGCGTTTGTCAGGACTCAGGAGTTAGGACTTCAATTACTGTTCTCACAAGACTCATTCTGCAAATTATGGGCGTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.18

Weight (kDa)

8.36

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	4 cut(s)	185, 256, 376, 416
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	9 cut(s)	165, 251, 254, 369, 374, 416, 419, 422, 443
AclWI	GGATC	3 cut(s)	320, 329, 381
AcvI	CACGTG	1 cut(s)	294
AfiI	CCNNNNNNNGG	4 cut(s)	57, 143, 304, 311
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	3 cut(s)	31, 472, 546
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	27, 222, 264, 350
AluI	AGCT	4 cut(s)	27, 222, 264, 350
Alw21I	GWGCWC	2 cut(s)	66, 414
Alw26I	GTCTC	2 cut(s)	313, 504
AlwI	GGATC	3 cut(s)	320, 329, 381
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	2 cut(s)	73, 370
ApeKI	GCWGC	3 cut(s)	107, 219, 276
AsiGI	ACCGGT	1 cut(s)	7
AspLEI	GCGC	3 cut(s)	129, 187, 258
AspS9I	GGNCC	3 cut(s)	73, 371, 394
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	2 cut(s)	114, 209
BbrPI	CACGTG	1 cut(s)	294
BbsI	GAAGAC	2 cut(s)	169, 293
Bbv12I	GWGCWC	2 cut(s)	66, 414
BbvI	GCAGC	3 cut(s)	94, 231, 288
BceAI	ACGGC	2 cut(s)	152, 282
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	313, 504
BfaI	CTAG	2 cut(s)	435, 494
BisI	GCNGC	9 cut(s)	108, 220, 251, 254, 277, 370, 417, 420, 444
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	9 cut(s)	109, 221, 252, 255, 278, 371, 418, 421, 445
Bme1390I	CCNGG	2 cut(s)	283, 391
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	3 cut(s)	73, 371, 394
BmiI	GGNNCC	3 cut(s)	249, 395, 426
BmrFI	CCNGG	2 cut(s)	283, 391
BpiI	GAAGAC	2 cut(s)	169, 293
BpmI	CTGGAG	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	391
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	281, 282, 329, 390
BsaWI	WCCGGW	4 cut(s)	7, 98, 121, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 143, 304, 311
Bse118I	RCCGGY	1 cut(s)	7
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	281, 282, 329, 390
BseLI	CCNNNNNNNGG	4 cut(s)	57, 143, 304, 311
BseMII	CTCAG	2 cut(s)	324, 543
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	94, 231, 288
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	4 cut(s)	185, 256, 376, 416
BshFI	GGCC	2 cut(s)	75, 372
BshTI	ACCGGT	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	324
BsiHKAI	GWGCWC	2 cut(s)	66, 414
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	5 cut(s)	8, 99, 122, 305, 390
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	57, 143, 304, 311
BsmAI	GTCTC	2 cut(s)	313, 504
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	75, 372
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	4 cut(s)	66, 150, 236, 414
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	321, 325, 386, 437
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	9 cut(s)	165, 251, 254, 369, 374, 416, 419, 422, 443
BspANI	GGCC	2 cut(s)	75, 372
BspCNI	CTCAG	2 cut(s)	323, 542
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	4 cut(s)	185, 256, 376, 416
BspLI	GGNNCC	3 cut(s)	249, 395, 426
BspPI	GGATC	3 cut(s)	320, 329, 381
BspTNI	GGTCTC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	4 cut(s)	281, 282, 329, 390
BssMI	GATC	4 cut(s)	321, 325, 386, 437
BssSI	CACGAG	2 cut(s)	114, 209
BssT1I	CCWWGG	1 cut(s)	329
Bst2BI	CACGAG	2 cut(s)	114, 209
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	4 cut(s)	193, 241, 451, 553
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	374, 414
BstDEI	CTNAG	4 cut(s)	42, 215, 310, 529
BstFNI	CGCG	4 cut(s)	185, 256, 376, 416
BstHHI	GCGC	3 cut(s)	129, 187, 258
BstKTI	GATC	4 cut(s)	324, 328, 389, 440
BstMAI	GTCTC	2 cut(s)	313, 504
BstMBI	GATC	4 cut(s)	321, 325, 386, 437
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 382, 503
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	281, 389
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	4 cut(s)	185, 256, 376, 416
BstV1I	GCAGC	3 cut(s)	94, 231, 288
BstV2I	GAAGAC	2 cut(s)	169, 293
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	75, 372
BsuTUI	ATCGAT	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	374, 414
CfoI	GCGC	3 cut(s)	129, 187, 258
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	73, 371, 394
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	191, 486
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	1 cut(s)	77
DdeI	CTNAG	4 cut(s)	42, 215, 310, 529
DpnI	GATC	4 cut(s)	323, 327, 388, 439
DpnII	GATC	4 cut(s)	321, 325, 386, 437
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	1 cut(s)	80
FaiI	YATR	3 cut(s)	78, 581, 592
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	1 cut(s)	76
FauI	CCCGC	2 cut(s)	172, 381
Fnu4HI	GCNGC	9 cut(s)	108, 220, 251, 254, 277, 370, 417, 420, 444
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	9 cut(s)	108, 220, 251, 254, 277, 370, 417, 420, 444
FspBI	CTAG	2 cut(s)	435, 494
GlaI	GCGC	3 cut(s)	128, 186, 257
GluI	GCNGC	9 cut(s)	108, 220, 251, 254, 277, 370, 417, 420, 444
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	75, 372
HapII	CCGG	5 cut(s)	8, 99, 122, 305, 390
HgaI	GACGC	2 cut(s)	191, 486
HhaI	GCGC	3 cut(s)	129, 187, 258
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	3 cut(s)	127, 185, 256
HinP1I	GCGC	3 cut(s)	127, 185, 256
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	8 cut(s)	174, 207, 315, 359, 472, 482, 527, 564
HpaII	CCGG	5 cut(s)	8, 99, 122, 305, 390
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	6 cut(s)	122, 312, 319, 435, 524, 531
Hpy99I	CGWCG	3 cut(s)	185, 241, 451
HpyAV	CCTTC	3 cut(s)	170, 438, 471
HpyCH4III	ACNGT	4 cut(s)	193, 241, 451, 553
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	110, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 382, 503
HpyF3I	CTNAG	4 cut(s)	42, 215, 310, 529
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	3 cut(s)	127, 185, 256
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	321, 325, 386, 437
LmnI	GCTCC	4 cut(s)	61, 124, 247, 263
Lsp1109I	GCAGC	3 cut(s)	94, 231, 288
MaeI	CTAG	2 cut(s)	435, 494
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	94, 155
MalI	GATC	4 cut(s)	323, 327, 388, 439
MboI	GATC	4 cut(s)	321, 325, 386, 437
MboII	GAAGA	6 cut(s)	169, 293, 350, 353, 356, 449
MhlI	GDGCHC	4 cut(s)	66, 150, 236, 414
MluCI	AATT	2 cut(s)	546, 576
MlyI	GAGTC	5 cut(s)	183, 201, 324, 521, 558
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	266, 279, 442
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	5 cut(s)	8, 99, 122, 305, 390
MspR9I	CCNGG	2 cut(s)	283, 391
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	4 cut(s)	185, 256, 376, 416
MwoI	GCNNNNNNNGC	3 cut(s)	47, 382, 503
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	321, 325, 386, 437
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	3 cut(s)	249, 395, 426
NmuCI	GTSAC	2 cut(s)	94, 155
PaeR7I	CTCGAG	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 207
PfeI	GAWTC	3 cut(s)	359, 472, 482
PflFI	GACNNNGTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	7
PkrI	GCNGC	9 cut(s)	109, 221, 252, 255, 278, 371, 418, 421, 445
PleI	GAGTC	5 cut(s)	182, 201, 323, 521, 558
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
PpsI	GAGTC	5 cut(s)	182, 201, 323, 521, 558
Ppu21I	YACGTR	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	249, 395, 426
PspPI	GGNCC	3 cut(s)	73, 371, 394
PspXI	VCTCGAGB	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	241
SatI	GCNGC	9 cut(s)	108, 220, 251, 254, 277, 370, 417, 420, 444
Sau3AI	GATC	4 cut(s)	321, 325, 386, 437
Sau96I	GGNCC	3 cut(s)	73, 371, 394
SchI	GAGTC	5 cut(s)	183, 201, 324, 521, 558
ScrFI	CCNGG	2 cut(s)	283, 391
SduI	GDGCHC	4 cut(s)	66, 150, 236, 414
SetI	ASST	6 cut(s)	29, 162, 224, 266, 296, 352
Sfr274I	CTCGAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	22, 270
SmoI	CTYRAG	2 cut(s)	22, 270
Sse9I	AATT	2 cut(s)	546, 576
SsiI	CCGC	9 cut(s)	165, 251, 254, 369, 374, 416, 419, 422, 443
SspMI	CTAG	2 cut(s)	435, 494
StyD4I	CCNGG	2 cut(s)	281, 389
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	4 cut(s)	193, 241, 451, 553
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	6 cut(s)	150, 172, 180, 224, 271, 324
TasI	AATT	2 cut(s)	546, 576
TauI	GCSGC	6 cut(s)	253, 256, 372, 419, 422, 446
TfiI	GAWTC	3 cut(s)	359, 472, 482
TseFI	GTSAC	2 cut(s)	94, 155
TseI	GCWGC	3 cut(s)	107, 219, 276
Tsp45I	GTSAC	2 cut(s)	94, 155
TspDTI	ATGAA	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	394
XbaI	TCTAGA	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	270
XspI	CTAG	2 cut(s)	435, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.