Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Reverse (-)

6868988 .. 6871232

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAATGATAGTGGTAGTGGCGGCGTTAGGAGTAATGGCAAGGCTGAAGAAGAAGGCAGCACTGCTCCTCTTCCTGAGAAGGGTGGCTTCGGACAAGCGTATGTCGGTCGGCGTGTTTCTGATGTAAATACAAACGAGAGAACTGGACCAGGAGCTGTTGAGGTGGCCCTAAAACTCGAGCACAAAAATAGTAAAGGGTGCAATTATGGACCGCCACAGGAGTGGAAAGTTTATGACACTCTAGGTGGCAGCCAGGGTGTGCCGCGGGTACACTATAAAGGCAAGCAAGGCGAGTATTATATCATGGTCATGGACATGTTGCGGCCAAGCTTGTGGGATGTTTGGAATAATATTGGCAATCAAACAATGGCCATTGAGATGGTTGCGTGTATTGTCATTGAAGCAATATCAATATTGGAGAAGATGCATTCTCGAGGGTATGTACATGCAGATGTAAAGCCTGAGAACTTTCTACTTGGTACTCCTCGGACTCGTGATGAGAAAAAGCTATTTTTAGTTGATCTTGGACTAGCAACTGAATGGCGAGATAGTTCAACTGGTCAGCATGTTGCTTATAACCAAAGGCCAGATGTTTTTAGAGGAACAGTACGTTACGCTAGTGTGCATGCTCATTTAGGGAGGACGAGTAGTAGGAGAGATGATCTTGAGTCTTTAGCTTATACCCTTGTGTTCCTTCTCCGTGGTCGTCTCCCCTGGCAAGGATACCAGGGAGAGAATAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCAATGTCTCCAGAGACCTTGTGTTCTTTCAGTCCACTCCCTTTTAGACAATTTGTTGAACATGTAGTGAACTTGAAGTTTGATGAAGAACCTAATTACGCAAAATGTATATCACTATTTGATGGGACTATAAGTTTAAATCCTGATATCAGGCCAATAAACACAGAGGGTACGTGCACAGAAGCTTATGAATCTGGTTGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

324

Amino Acids

36.21

Weight (kDa)

6.72

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	55 - 308	5.9e-15	Protein kinase domain
Pkinase_fungal	PF17667	125 - 231	3e-09	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccII	CGCG	1 cut(s)	265
AciI	CCGC	5 cut(s)	21, 212, 263, 265, 322
AcoI	YGGCCR	2 cut(s)	323, 369
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	5 cut(s)	270, 444, 481, 609, 940
AfiI	CCNNNNNNNGG	2 cut(s)	80, 719
AflIII	ACRYGT	2 cut(s)	315, 829
AgsI	TTSAA	4 cut(s)	401, 555, 827, 844
AjnI	CCWGG	4 cut(s)	148, 252, 713, 726
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	155, 330, 508, 677, 953
AluI	AGCT	5 cut(s)	155, 330, 508, 677, 953
Alw21I	GWGCWC	2 cut(s)	183, 947
Alw26I	GTCTC	3 cut(s)	713, 776, 780
Alw44I	GTGCAC	1 cut(s)	943
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	2 cut(s)	176, 432
AoxI	GGCC	5 cut(s)	165, 323, 369, 584, 920
ApaLI	GTGCAC	1 cut(s)	943
ApeKI	GCWGC	2 cut(s)	57, 249
AspS9I	GGNCC	3 cut(s)	146, 166, 209
AvaI	CYCGRG	2 cut(s)	176, 432
AvaII	GGWCC	2 cut(s)	146, 209
BaeGI	GKGCMC	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	371
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	2 cut(s)	183, 947
BbvI	GCAGC	2 cut(s)	69, 261
BccI	CCATC	3 cut(s)	373, 760, 884
BciT130I	CCWGG	4 cut(s)	150, 254, 715, 728
BciVI	GTATCC	1 cut(s)	716
BcoDI	GTCTC	3 cut(s)	713, 776, 780
BfaI	CTAG	3 cut(s)	242, 530, 618
BfuI	GTATCC	1 cut(s)	716
BisI	GCNGC	5 cut(s)	22, 58, 250, 263, 323
BlsI	GCNGC	5 cut(s)	23, 59, 251, 264, 324
Bme1390I	CCNGG	4 cut(s)	150, 254, 715, 728
Bme18I	GGWCC	2 cut(s)	146, 209
BmeT110I	CYCGRG	2 cut(s)	176, 432
BmgT120I	GGNCC	3 cut(s)	146, 166, 209
BmrFI	CCNGG	4 cut(s)	150, 254, 715, 728
BmsI	GCATC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	686
BsaAI	YACGTR	1 cut(s)	942
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	6 cut(s)	253, 263, 485, 700, 713, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 719
Bse1I	ACTGG	2 cut(s)	148, 562
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	4 cut(s)	150, 254, 715, 728
BseDI	CCNNGG	6 cut(s)	253, 263, 485, 700, 713, 727
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	80, 719
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	66, 453
BseNI	ACTGG	2 cut(s)	148, 562
BseRI	GAGGAG	2 cut(s)	57, 474
BseSI	GKGCMC	1 cut(s)	947
BseXI	GCAGC	2 cut(s)	69, 261
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	5 cut(s)	167, 325, 371, 586, 922
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	183, 947
BsiHKCI	CYCGRG	2 cut(s)	176, 432
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	2 cut(s)	80, 719
BsmAI	GTCTC	3 cut(s)	713, 776, 780
BsmBI	CGTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	5 cut(s)	167, 325, 371, 586, 922
Bso31I	GGTCTC	1 cut(s)	776
BsoBI	CYCGRG	2 cut(s)	176, 432
Bsp1286I	GDGCHC	2 cut(s)	183, 947
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	520, 661
BspACI	CCGC	5 cut(s)	21, 212, 263, 265, 322
BspANI	GGCC	5 cut(s)	167, 325, 371, 586, 922
BspCNI	CTCAG	2 cut(s)	67, 454
BspFNI	CGCG	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	148, 562
BssECI	CCNNGG	6 cut(s)	253, 263, 485, 700, 713, 727
BssMI	GATC	2 cut(s)	520, 661
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	4 cut(s)	150, 254, 715, 728
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	442
BstBAI	YACGTR	1 cut(s)	942
BstC8I	GCNNGC	2 cut(s)	284, 627
BstDEI	CTNAG	2 cut(s)	75, 462
BstDSI	CCRYGG	2 cut(s)	263, 700
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	523, 664
BstMAI	GTCTC	3 cut(s)	713, 776, 780
BstMBI	GATC	2 cut(s)	520, 661
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	4 cut(s)	150, 254, 715, 728
BstNSI	RCATGY	5 cut(s)	319, 449, 569, 629, 833
BstSCI	CCNGG	4 cut(s)	148, 252, 713, 726
BstSLI	GKGCMC	1 cut(s)	947
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	69, 261
BstXI	CCANNNNNNTGG	3 cut(s)	222, 333, 379
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	5 cut(s)	167, 325, 371, 586, 922
BtgI	CCRYGG	2 cut(s)	263, 700
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	284, 627
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	146, 166, 209
Cfr42I	CCGCGG	1 cut(s)	266
Csp6I	GTAC	5 cut(s)	269, 443, 480, 608, 939
CviAII	CATG	7 cut(s)	304, 310, 316, 446, 566, 626, 830
CviQI	GTAC	5 cut(s)	269, 443, 480, 608, 939
DdeI	CTNAG	2 cut(s)	75, 462
DpnI	GATC	2 cut(s)	522, 663
DpnII	GATC	2 cut(s)	520, 661
DraI	TTTAAA	1 cut(s)	906
EaeI	YGGCCR	2 cut(s)	323, 369
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	776
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	146, 209
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	2 cut(s)	176, 432
EcoRII	CCWGG	4 cut(s)	148, 252, 713, 726
EcoRV	GATATC	1 cut(s)	916
EcoT22I	ATGCAT	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	7 cut(s)	307, 313, 319, 449, 569, 629, 833
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 732, 764
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	7 cut(s)	303, 309, 315, 445, 565, 625, 829
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	22, 58, 250, 263, 323
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	22, 58, 250, 263, 323
FspBI	CTAG	3 cut(s)	242, 530, 618
GluI	GCNGC	5 cut(s)	22, 58, 250, 263, 323
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	5 cut(s)	167, 325, 371, 586, 922
Hin1II	CATG	7 cut(s)	307, 313, 319, 449, 569, 629, 833
HindIII	AAGCTT	2 cut(s)	328, 951
HinfI	GANTC	4 cut(s)	490, 668, 744, 959
Hpy166II	GTNNAC	4 cut(s)	271, 803, 838, 945
Hpy188I	TCNGA	3 cut(s)	92, 121, 489
Hpy188III	TCNNGA	6 cut(s)	74, 432, 494, 665, 779, 911
Hpy8I	GTNNAC	4 cut(s)	271, 803, 838, 945
HpyAV	CCTTC	3 cut(s)	47, 73, 704
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	2 cut(s)	610, 941
HpyCH4V	TGCA	6 cut(s)	201, 427, 449, 625, 756, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	2 cut(s)	75, 462
HpySE526I	ACGT	2 cut(s)	610, 941
Hsp92II	CATG	7 cut(s)	307, 313, 319, 449, 569, 629, 833
KspI	CCGCGG	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	520, 661
LmnI	GCTCC	2 cut(s)	70, 152
Lsp1109I	GCAGC	2 cut(s)	69, 261
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	3 cut(s)	242, 530, 618
MaeII	ACGT	2 cut(s)	610, 941
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	2 cut(s)	522, 663
MboI	GATC	2 cut(s)	520, 661
MboII	GAAGA	7 cut(s)	59, 62, 62, 433, 772, 775, 866
MhlI	GDGCHC	2 cut(s)	183, 947
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	3 cut(s)	202, 818, 862
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	484, 677
MnlI	CCTC	7 cut(s)	78, 154, 428, 495, 593, 633, 928
Mox20I	TGGCCA	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	905
MslI	CAYNNNNRTG	5 cut(s)	220, 308, 314, 377, 450
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	265
MspR9I	CCNGG	4 cut(s)	150, 254, 715, 728
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	4 cut(s)	150, 254, 715, 728
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	2 cut(s)	520, 661
NlaIII	CATG	7 cut(s)	307, 313, 319, 449, 569, 629, 833
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	5 cut(s)	319, 449, 569, 629, 833
OliI	CACNNNNGTG	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	629
PaeR7I	CTCGAG	2 cut(s)	176, 432
PciI	ACATGT	2 cut(s)	315, 829
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	744, 959
PkrI	GCNGC	5 cut(s)	23, 59, 251, 264, 324
PleI	GAGTC	2 cut(s)	484, 676
PpsI	GAGTC	2 cut(s)	484, 676
Ppu21I	YACGTR	1 cut(s)	942
PscI	ACATGT	2 cut(s)	315, 829
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	4 cut(s)	148, 252, 713, 726
PspGI	CCWGG	4 cut(s)	148, 252, 713, 726
PspPI	GGNCC	3 cut(s)	146, 166, 209
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	5 cut(s)	270, 444, 481, 609, 940
RsaNI	GTAC	5 cut(s)	269, 443, 480, 608, 939
RseI	CAYNNNNRTG	5 cut(s)	220, 308, 314, 377, 450
SacII	CCGCGG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	905
SatI	GCNGC	5 cut(s)	22, 58, 250, 263, 323
Sau3AI	GATC	2 cut(s)	520, 661
Sau96I	GGNCC	3 cut(s)	146, 166, 209
SchI	GAGTC	2 cut(s)	484, 677
ScrFI	CCNGG	4 cut(s)	150, 254, 715, 728
SduI	GDGCHC	2 cut(s)	183, 947
SfaNI	GCATC	1 cut(s)	414
Sfr274I	CTCGAG	2 cut(s)	176, 432
Sfr303I	CCGCGG	1 cut(s)	266
SgrBI	CCGCGG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	146, 209
SlaI	CTCGAG	2 cut(s)	176, 432
SmiMI	CAYNNNNRTG	5 cut(s)	220, 308, 314, 377, 450
SmlI	CTYRAG	3 cut(s)	176, 432, 665
SmoI	CTYRAG	3 cut(s)	176, 432, 665
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	3 cut(s)	202, 818, 862
SsiI	CCGC	5 cut(s)	21, 212, 263, 265, 322
SspI	AATATT	2 cut(s)	352, 414
SspMI	CTAG	3 cut(s)	242, 530, 618
StyD4I	CCNGG	4 cut(s)	148, 252, 713, 726
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	2 cut(s)	613, 944
TaqI	TCGA	2 cut(s)	177, 433
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	202, 818, 862
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	3 cut(s)	24, 265, 325
TfiI	GAWTC	2 cut(s)	744, 959
Tru1I	TTAA	1 cut(s)	905
Tru9I	TTAA	1 cut(s)	905
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	57, 249
TspDTI	ATGAA	3 cut(s)	17, 867, 972
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	943
VpaK11BI	GGWCC	2 cut(s)	146, 209
XceI	RCATGY	5 cut(s)	319, 449, 569, 629, 833
XhoI	CTCGAG	2 cut(s)	176, 432
XspI	CTAG	3 cut(s)	242, 530, 618
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.