Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Reverse (-)

63152183 .. 63156322

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG462500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGCCTGAGCCGCGCCGCAGAAATCGGACCCCTAAAAACCCCGACCCGATTACCCGAAGGGCCGCACTGAGGAAGACGAATTGTGGTAAAATTATTAAGAGTAGGAATAATCGGAAGAAGAAGAGCCGTCCGGTGCTCGAAACGAGGTCGTTTGAGTTGAAGGAACACCAGGTTAGGGATTTCAGAGCCATGGATGAGTACGATAGCGGTGGCCGCAGCGGCGATAAGGGTCCGGTAGCTGAGGAAGAAATCTCAGCTCCTATTCCTGACAAGGTCCAGGTTGGTGGTTCCCCGCTGTACAAAGTAGAGAGGAAATTGGGGAAAGGAGGCTTTGGACAAGTATATGTTGGCCGGCGCACTGCACCCGGCCCTGGAGCTATTGAGGTTGCCTTGAAATTTGAGCATAGAAGCAGTAAAGGATGTAATTATGGCCCACCATATGAGTGGCAAATTTACAATGCACTTGGTGGTAGTCATGGAGTTCCAAGAGTTCATTATAAGGGCCGGCAAGCTGACTACTATATCATGGTTATGGATATTCTTGGGCCTAGTTTGTGGGATGTCTGGAATAACAGCTCGCACACAATGTCAATTGAAATGGTTGCATGTATTGCCATTGAGGCAATTTCCATATTGGAGAAGATGCACTCTAGAGGATATGTGCATGGAGATGTGAAACCTGAGAACTTTTTGCTTGGTCCGCCTGGAACTCCTGAGGAGAAGAAGCTATTCCTTGTTGACCTTGGATTAGCCACCAGGTGGCGAGATAGTTCAACTGGCCTGCATATAGATTATGATCAACGTCCAGATGTTTTCAGGGGAACTGTGCGGTATGCAAGTGTGCATGCTCATCTTGGTAGAACTGGTAGCAGGAGAGATGACTTGGAATCTTTAGCTTACACATTGATATTTCTTCTCCGTGGGCGGTTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTCCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACTCTATGTTGCTTTTGCCCTCAACCATTCAGACTGTTTGTTGAGTATGTGGTGAATTTGAAGTTTGATGAAGAACCGAACTATGCAAAATATATATCCCTTTTTGATGGAGTTGTTGGTCCAAATCCAGATATTAGACCAATAAATACTGATGGTGCTCAGAAGCTTATATGTCAGGTTGGACAAAAGAGAGGGCGATTAACCATGGAGGAAGAGGATGACGAGCAGCCAAAGAAGAAAATTCGCATGGGGATGCCGGCAACACAATGGATTAGTGTTTACAATGCTCGTAGGCCTATGAAGCAAAGATATCACTACAATGTGGCAGATGTGAGGCTTTCCCAACATATTGAGAAAGGAAATGAAGATGGGTTGTTTATCAGCAGTGTGGCTTCCTGTTCAAATCTTTGGGCTCTCATTATGGATGCTGGAACTGGATTCAGTTCCCAAGTTTATGAACTCTCTCCATTTTTTCTCCACAAGGAATGGATCATGGAACAATGGGACAAAAATTACTATATCAGCGCAATAGCAGGAGCTAACAATGGAAGCTCTTTGGTTGTAATGTCTAAAGGGACCTCATTCTTACAGCAGTCCTATAAAGTCAGTGAGTCATTTCCTTTCAAGTGGATTAATAAAAAATGGAGGGAAGGATTTTATGTTACTGCAATGGCCACTGCAGGGAGTAGATGGGCTATTGTTATGTCTCGGGGTGCAGGATTTTCTGACCAGGTTGTAGAACTAGATTTTCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAGTGGTTACCGCATCACGTCAACTGCAGCAACTTGGGATCAGGCAGCTCTCGTTCTTAGTGTTCCAAGGAGAAAACCTGCTGATGAAACACAAGAGACTCTTCGAACCTCTGCTTTTCCAAGTACACATGTGAAGGAGAAATGGGCAAAAAACCTTTACCTAGCATCTATTTGTTATGGTCGAACTGTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

660

Amino Acids

74.85

Weight (kDa)

9.37

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	100 - 327	1.4e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	101 - 256	2e-06	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	199 - 304	3.4e-07	Fungal protein kinase
DUF7477	PF24289	393 - 660	5.1e-166	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	1873
AccB7I	CCANNNNNTGG	1 cut(s)	759
AccII	CGCG	1 cut(s)	13
AclWI	GGATC	2 cut(s)	1499, 1833
AcoI	YGGCCR	4 cut(s)	211, 349, 987, 1674
AcsI	RAATTY	4 cut(s)	395, 450, 1057, 1242
AdeI	CACNNNGTG	2 cut(s)	467, 759
AfaI	GTAC	3 cut(s)	200, 299, 1912
AfiI	CCNNNNNNNGG	7 cut(s)	69, 175, 371, 759, 938, 1683, 1766
AflIII	ACRYGT	1 cut(s)	1915
AgsI	TTSAA	7 cut(s)	160, 394, 596, 774, 1063, 1404, 1627
AjiI	CACGTC	1 cut(s)	1806
AjnI	CCWGG	7 cut(s)	168, 276, 370, 703, 755, 945, 1731
Alw21I	GWGCWC	2 cut(s)	138, 1162
Alw26I	GTCTC	2 cut(s)	1713, 1877
AlwI	GGATC	2 cut(s)	1499, 1833
Ama87I	CYCGRG	1 cut(s)	1710
ApeKI	GCWGC	4 cut(s)	216, 1228, 1814, 1832
ApoI	RAATTY	4 cut(s)	395, 450, 1057, 1242
AseI	ATTAAT	1 cut(s)	1635
Asp700I	GAANNNNTTC	2 cut(s)	728, 1770
AspLEI	GCGC	3 cut(s)	15, 357, 1529
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	1066
AsuII	TTCGAA	1 cut(s)	1891
AvaI	CYCGRG	1 cut(s)	1710
AvaII	GGWCC	6 cut(s)	27, 230, 274, 698, 1121, 1578
AxyI	CCTNAGG	1 cut(s)	714
BalI	TGGCCA	2 cut(s)	989, 1676
BanII	GRGCYC	1 cut(s)	1417
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	138, 1162
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	228, 1240, 1826, 1844
BccI	CCATC	5 cut(s)	979, 1103, 1148, 1364, 1686
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	7 cut(s)	170, 278, 372, 705, 757, 947, 1733
BciVI	GTATCC	2 cut(s)	935, 1767
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	1713, 1877
BfaI	CTAG	5 cut(s)	549, 651, 1745, 1761, 1949
BfmI	CTRYAG	2 cut(s)	1680, 1812
BfuAI	ACCTGC	1 cut(s)	1873
BfuI	GTATCC	2 cut(s)	935, 1767
BglI	GCCNNNNNGGC	2 cut(s)	219, 620
BisI	GCNGC	9 cut(s)	11, 16, 63, 214, 217, 220, 1229, 1815, 1833
BlsI	GCNGC	9 cut(s)	12, 17, 64, 215, 218, 221, 1230, 1816, 1834
Bme1390I	CCNGG	8 cut(s)	170, 278, 366, 372, 705, 757, 947, 1733
Bme18I	GGWCC	6 cut(s)	27, 230, 274, 698, 1121, 1578
BmeT110I	CYCGRG	1 cut(s)	1710
BmgBI	CACGTC	1 cut(s)	1806
BmiI	GGNNCC	4 cut(s)	29, 231, 289, 1579
BmrFI	CCNGG	8 cut(s)	170, 278, 366, 372, 705, 757, 947, 1733
BmsI	GCATC	5 cut(s)	633, 1245, 1417, 1809, 1961
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	393, 981
Bpu10I	CCTNAGC	2 cut(s)	6, 240
Bpu14I	TTCGAA	1 cut(s)	1891
BpuMI	CCSGG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	795
BsaJI	CCNNGG	8 cut(s)	189, 370, 742, 919, 932, 946, 1206, 1853
BsaWI	WCCGGW	2 cut(s)	130, 232
Bsc4I	CCNNNNNNNGG	7 cut(s)	69, 175, 371, 759, 938, 1683, 1766
Bse118I	RCCGGY	3 cut(s)	351, 504, 1258
Bse1I	ACTGG	3 cut(s)	781, 868, 1441
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	1677
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	7 cut(s)	170, 278, 372, 705, 757, 947, 1733
BseDI	CCNNGG	8 cut(s)	189, 370, 742, 919, 932, 946, 1206, 1853
BseGI	GGATG	6 cut(s)	199, 425, 565, 1225, 1260, 1432
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	7 cut(s)	69, 175, 371, 759, 938, 1683, 1766
BseMI	GCAATG	1 cut(s)	1677
BseMII	CTCAG	6 cut(s)	59, 231, 267, 672, 705, 1175
BseNI	ACTGG	3 cut(s)	781, 868, 1441
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	4 cut(s)	228, 1240, 1826, 1844
BsgI	GTGCAG	2 cut(s)	345, 1737
Bsh1236I	CGCG	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	138, 1162
BsiHKCI	CYCGRG	1 cut(s)	1710
BsiSI	CCGG	6 cut(s)	131, 233, 352, 366, 505, 1259
BslFI	GGGAC	3 cut(s)	1520, 1591, 1799
BslI	CCNNNNNNNGG	7 cut(s)	69, 175, 371, 759, 938, 1683, 1766
BsmAI	GTCTC	2 cut(s)	1713, 1877
BsmFI	GGGAC	3 cut(s)	1520, 1591, 1799
BsoBI	CYCGRG	1 cut(s)	1710
Bsp119I	TTCGAA	1 cut(s)	1891
Bsp1286I	GDGCHC	3 cut(s)	138, 1162, 1417
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	796, 1491, 1825
Bsp19I	CCATGG	2 cut(s)	189, 1206
BspCNI	CTCAG	6 cut(s)	60, 232, 266, 673, 706, 1174
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	1979
BspLI	GGNNCC	4 cut(s)	29, 231, 289, 1579
BspMAI	CTGCAG	2 cut(s)	1684, 1816
BspMI	ACCTGC	1 cut(s)	1873
BspPI	GGATC	2 cut(s)	1499, 1833
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	1891
BsrDI	GCAATG	1 cut(s)	1677
BsrFI	RCCGGY	3 cut(s)	351, 504, 1258
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	781, 868, 1441
BssAI	RCCGGY	3 cut(s)	351, 504, 1258
BssECI	CCNNGG	8 cut(s)	189, 370, 742, 919, 932, 946, 1206, 1853
BssMI	GATC	3 cut(s)	796, 1491, 1825
BssT1I	CCWWGG	5 cut(s)	189, 742, 932, 1206, 1853
Bst2UI	CCWGG	7 cut(s)	170, 278, 372, 705, 757, 947, 1733
Bst4CI	ACNGT	4 cut(s)	826, 1038, 1790, 1975
Bst6I	CTCTTC	3 cut(s)	116, 1209, 1893
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	1891
BstC8I	GCNNGC	7 cut(s)	353, 506, 510, 578, 782, 846, 1260
BstDEI	CTNAG	8 cut(s)	6, 68, 240, 253, 681, 714, 1161, 1844
BstDSI	CCRYGG	3 cut(s)	189, 919, 1206
BstEII	GGTNACC	2 cut(s)	927, 1793
BstENI	CCTNNNNNAGG	2 cut(s)	936, 1764
BstF5I	GGATG	6 cut(s)	199, 425, 565, 1225, 1260, 1432
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	3 cut(s)	15, 357, 1529
BstKTI	GATC	3 cut(s)	799, 1494, 1828
BstMAI	GTCTC	2 cut(s)	1713, 1877
BstMBI	GATC	3 cut(s)	796, 1491, 1825
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 213, 219, 611, 620, 700, 1303
BstNI	CCWGG	7 cut(s)	170, 278, 372, 705, 757, 947, 1733
BstNSI	RCATGY	3 cut(s)	609, 848, 1919
BstPI	GGTNACC	2 cut(s)	927, 1793
BstSCI	CCNGG	8 cut(s)	168, 276, 364, 370, 703, 755, 945, 1731
BstSFI	CTRYAG	2 cut(s)	1680, 1812
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	4 cut(s)	228, 1240, 1826, 1844
BstV2I	GAAGAC	1 cut(s)	80
BstXI	CCANNNNNNTGG	2 cut(s)	284, 444
Bsu36I	CCTNAGG	1 cut(s)	714
BsuI	GTATCC	2 cut(s)	935, 1767
BtgI	CCRYGG	3 cut(s)	189, 919, 1206
BtrI	CACGTC	1 cut(s)	1806
BtsCI	GGATG	6 cut(s)	199, 425, 565, 1225, 1260, 1432
BtsI	GCAGTG	3 cut(s)	357, 1393, 1677
BtsIMutI	CAGTG	6 cut(s)	65, 357, 1393, 1615, 1677, 1795
BveI	ACCTGC	1 cut(s)	1873
Cac8I	GCNNGC	7 cut(s)	353, 506, 510, 578, 782, 846, 1260
CciI	TCATGA	1 cut(s)	1979
CfoI	GCGC	3 cut(s)	15, 357, 1529
Cfr10I	RCCGGY	3 cut(s)	351, 504, 1258
CsiI	ACCWGGT	3 cut(s)	168, 755, 1731
Csp6I	GTAC	3 cut(s)	199, 298, 1911
CviQI	GTAC	3 cut(s)	199, 298, 1911
DdeI	CTNAG	8 cut(s)	6, 68, 240, 253, 681, 714, 1161, 1844
DpnI	GATC	3 cut(s)	798, 1493, 1827
DpnII	GATC	3 cut(s)	796, 1491, 1825
DraIII	CACNNNGTG	2 cut(s)	467, 759
EaeI	YGGCCR	4 cut(s)	211, 349, 987, 1674
Eam1104I	CTCTTC	3 cut(s)	116, 1209, 1893
EarI	CTCTTC	3 cut(s)	116, 1209, 1893
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	5 cut(s)	189, 742, 932, 1206, 1853
Eco147I	AGGCCT	1 cut(s)	1297
Eco24I	GRGCYC	1 cut(s)	1417
Eco32I	GATATC	1 cut(s)	1313
Eco47I	GGWCC	6 cut(s)	27, 230, 274, 698, 1121, 1578
Eco81I	CCTNAGG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	1710
Eco91I	GGTNACC	2 cut(s)	927, 1793
EcoNI	CCTNNNNNAGG	2 cut(s)	936, 1764
EcoO109I	RGGNCCY	1 cut(s)	1578
EcoO65I	GGTNACC	2 cut(s)	927, 1793
EcoRII	CCWGG	7 cut(s)	168, 276, 370, 703, 755, 945, 1731
EcoRV	GATATC	1 cut(s)	1313
EcoT14I	CCWWGG	5 cut(s)	189, 742, 932, 1206, 1853
EcoT38I	GRGCYC	1 cut(s)	1417
ErhI	CCWWGG	5 cut(s)	189, 742, 932, 1206, 1853
FalI	AAGNNNNNCTT	4 cut(s)	951, 983, 1872, 1904
FaqI	GGGAC	3 cut(s)	1520, 1591, 1799
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	9 cut(s)	11, 16, 63, 214, 217, 220, 1229, 1815, 1833
FokI	GGATG	6 cut(s)	206, 432, 572, 1232, 1267, 1439
FriOI	GRGCYC	1 cut(s)	1417
Fsp4HI	GCNGC	9 cut(s)	11, 16, 63, 214, 217, 220, 1229, 1815, 1833
FspBI	CTAG	5 cut(s)	549, 651, 1745, 1761, 1949
GlaI	GCGC	3 cut(s)	14, 356, 1528
GluI	GCNGC	9 cut(s)	11, 16, 63, 214, 217, 220, 1229, 1815, 1833
GsuI	CTGGAG	2 cut(s)	393, 981
HapII	CCGG	6 cut(s)	131, 233, 352, 366, 505, 1259
HhaI	GCGC	3 cut(s)	15, 357, 1529
Hin6I	GCGC	3 cut(s)	13, 355, 1527
HinP1I	GCGC	3 cut(s)	13, 355, 1527
HincII	GTYRAC	2 cut(s)	739, 1809
HindII	GTYRAC	2 cut(s)	739, 1809
HindIII	AAGCTT	1 cut(s)	1166
HinfI	GANTC	5 cut(s)	887, 963, 1440, 1613, 1885
HpaII	CCGG	6 cut(s)	131, 233, 352, 366, 505, 1259
HphI	GGTGA	1 cut(s)	1066
Hpy166II	GTNNAC	4 cut(s)	739, 1282, 1809, 1913
Hpy188I	TCNGA	6 cut(s)	27, 114, 185, 1034, 1164, 1729
Hpy188III	TCNNGA	8 cut(s)	266, 565, 651, 713, 806, 998, 1130, 1980
Hpy8I	GTNNAC	4 cut(s)	739, 1282, 1809, 1913
HpyAV	CCTTC	6 cut(s)	51, 154, 1646, 1760, 1773, 1915
HpyCH4III	ACNGT	4 cut(s)	826, 1038, 1790, 1975
HpyCH4IV	ACGT	2 cut(s)	802, 1805
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 213, 219, 611, 620, 700, 1303
HpyF3I	CTNAG	8 cut(s)	6, 68, 240, 253, 681, 714, 1161, 1844
HpySE526I	ACGT	2 cut(s)	802, 1805
HspAI	GCGC	3 cut(s)	13, 355, 1527
KroI	GCCGGC	3 cut(s)	351, 504, 1258
KroNI	GCCGGC	3 cut(s)	353, 506, 1260
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	796, 1491, 1825
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	262, 374, 1538
Lsp1109I	GCAGC	4 cut(s)	228, 1240, 1826, 1844
LweI	GCATC	5 cut(s)	633, 1245, 1417, 1809, 1961
MabI	ACCWGGT	3 cut(s)	168, 755, 1731
MaeI	CTAG	5 cut(s)	549, 651, 1745, 1761, 1949
MaeII	ACGT	2 cut(s)	802, 1805
MaeIII	GTNAC	3 cut(s)	927, 1663, 1793
MalI	GATC	3 cut(s)	798, 1493, 1827
MboI	GATC	3 cut(s)	796, 1491, 1825
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	3 cut(s)	138, 1162, 1417
MlsI	TGGCCA	2 cut(s)	989, 1676
MluNI	TGGCCA	2 cut(s)	989, 1676
MlyI	GAGTC	2 cut(s)	1622, 1879
MmeI	TCCRAC	1 cut(s)	1162
Mox20I	TGGCCA	2 cut(s)	989, 1676
MroNI	GCCGGC	3 cut(s)	351, 504, 1258
MroXI	GAANNNNTTC	2 cut(s)	728, 1770
MscI	TGGCCA	2 cut(s)	989, 1676
MseI	TTAA	3 cut(s)	96, 1202, 1635
MslI	CAYNNNNRTG	5 cut(s)	442, 530, 669, 1253, 1320
Msp20I	TGGCCA	2 cut(s)	989, 1676
MspA1I	CMGCKG	2 cut(s)	219, 295
MspI	CCGG	6 cut(s)	131, 233, 352, 366, 505, 1259
MspR9I	CCNGG	8 cut(s)	170, 278, 366, 372, 705, 757, 947, 1733
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	7 cut(s)	170, 278, 372, 705, 757, 947, 1733
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	7 cut(s)	10, 213, 219, 611, 620, 700, 1303
NaeI	GCCGGC	3 cut(s)	353, 506, 1260
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	2 cut(s)	189, 1206
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	796, 1491, 1825
NgoMIV	GCCGGC	3 cut(s)	351, 504, 1258
NlaIV	GGNNCC	4 cut(s)	29, 231, 289, 1579
NspI	RCATGY	3 cut(s)	609, 848, 1919
NspV	TTCGAA	1 cut(s)	1891
PaeI	GCATGC	1 cut(s)	848
PagI	TCATGA	1 cut(s)	1979
PceI	AGGCCT	1 cut(s)	1297
PciI	ACATGT	1 cut(s)	1915
PciSI	GCTCTTC	1 cut(s)	116
PdiI	GCCGGC	3 cut(s)	353, 506, 1260
PdmI	GAANNNNTTC	2 cut(s)	728, 1770
PfeI	GAWTC	3 cut(s)	887, 963, 1440
PflFI	GACNNNGTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	9 cut(s)	12, 17, 64, 215, 218, 221, 1230, 1816, 1834
PleI	GAGTC	2 cut(s)	1621, 1879
PpsI	GAGTC	2 cut(s)	1621, 1879
PpuMI	RGGWCCY	1 cut(s)	1578
PscI	ACATGT	1 cut(s)	1915
PshBI	ATTAAT	1 cut(s)	1635
PsiI	TTATAA	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	1578
Psp6I	CCWGG	7 cut(s)	168, 276, 370, 703, 755, 945, 1731
PspEI	GGTNACC	2 cut(s)	927, 1793
PspGI	CCWGG	7 cut(s)	168, 276, 370, 703, 755, 945, 1731
PspN4I	GGNNCC	4 cut(s)	29, 231, 289, 1579
PspPPI	RGGWCCY	1 cut(s)	1578
PstI	CTGCAG	2 cut(s)	1684, 1816
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	3 cut(s)	200, 299, 1912
RsaNI	GTAC	3 cut(s)	199, 298, 1911
RseI	CAYNNNNRTG	5 cut(s)	442, 530, 669, 1253, 1320
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	96, 1202, 1635
SatI	GCNGC	9 cut(s)	11, 16, 63, 214, 217, 220, 1229, 1815, 1833
Sau3AI	GATC	3 cut(s)	796, 1491, 1825
SchI	GAGTC	2 cut(s)	1622, 1879
ScrFI	CCNGG	8 cut(s)	170, 278, 366, 372, 705, 757, 947, 1733
SduI	GDGCHC	3 cut(s)	138, 1162, 1417
SexAI	ACCWGGT	3 cut(s)	168, 755, 1731
SfaNI	GCATC	5 cut(s)	633, 1245, 1417, 1809, 1961
SfcI	CTRYAG	2 cut(s)	1680, 1812
SfuI	TTCGAA	1 cut(s)	1891
SinI	GGWCC	6 cut(s)	27, 230, 274, 698, 1121, 1578
SmiMI	CAYNNNNRTG	5 cut(s)	442, 530, 669, 1253, 1320
SphI	GCATGC	1 cut(s)	848
SseBI	AGGCCT	1 cut(s)	1297
SspMI	CTAG	5 cut(s)	549, 651, 1745, 1761, 1949
StuI	AGGCCT	1 cut(s)	1297
StyD4I	CCNGG	8 cut(s)	168, 276, 364, 370, 703, 755, 945, 1731
StyI	CCWWGG	5 cut(s)	189, 742, 932, 1206, 1853
TaaI	ACNGT	4 cut(s)	826, 1038, 1790, 1975
TaiI	ACGT	2 cut(s)	805, 1808
TaqI	TCGA	4 cut(s)	138, 1777, 1891, 1969
TatI	WGTACW	2 cut(s)	297, 1910
TauI	GCSGC	5 cut(s)	13, 18, 65, 216, 222
TfiI	GAWTC	3 cut(s)	887, 963, 1440
Tru1I	TTAA	3 cut(s)	96, 1202, 1635
Tru9I	TTAA	3 cut(s)	96, 1202, 1635
TscAI	CASTG	6 cut(s)	72, 364, 1393, 1615, 1684, 1795
TseI	GCWGC	4 cut(s)	216, 1228, 1814, 1832
TspDTI	ATGAA	7 cut(s)	482, 1086, 1316, 1380, 1473, 1763, 1887
TspGWI	ACGGA	1 cut(s)	908
TspRI	CASTG	6 cut(s)	72, 364, 1393, 1615, 1684, 1795
Tth111I	GACNNNGTC	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	6 cut(s)	27, 230, 274, 698, 1121, 1578
VspI	ATTAAT	1 cut(s)	1635
XagI	CCTNNNNNAGG	2 cut(s)	936, 1764
XapI	RAATTY	4 cut(s)	395, 450, 1057, 1242
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	3 cut(s)	609, 848, 1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441
XmnI	GAANNNNTTC	2 cut(s)	728, 1770
XspI	CTAG	5 cut(s)	549, 651, 1745, 1761, 1949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.