Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Forward (+)

59444229 .. 59450133

Gene Structure 5905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG422700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGCCGGTACTGCGTGGAAGGGGCCGTGGAGCAGCTAAAAAGCAGGAGGTTACGAATCCGATCGACGCCGGAGAGGCCATTGCCACCAGAACAAGGCGAAGGCGAGCGGCGGCGGCGGCGGCACTGCCGAATAATAACAACAACAACAACAATCAGGTGAAGGAGGAAAAGAATCGGAAGGCAGCGGCTGCGGCTGCGGCCGGTGAGGAGAAGAAGGTAGTCGTTAAGGCGGAGAAAAAGAGGGTCGTTGAGAAGGAGGAAGTGAAAGAGAAGAAGATGAATGACAGTGGTAGTGGCGGCGTTAGGAGTAATGCCAAGGCTGAAGAAGAAGGCAGCACTGCTCCTCTTCCTGAGAAGGTTACTGTTGGTGGTTCCCCTGTCTACAGATTAGATAGAAAGCTGGGTAAGGGTGGCTTCGGACAAGTGTATGTCGGTCGGCGTGTTTCTGCTATAAATACGAATGAGAGAACTGGACCAGGAGCTGTTGAGGTGGCCTTAAAACTCGAGCACAAAAATAGTAAAGGGTGCAATTATGGACCGCCACAGGAGTGGAAAGTTTATGACACTCTTGGTGGCAGCCATGGTGTGCCGCGGGTACACTATAAGGGCAAGCAAGGCGAGTATTATATTATGGTGATGGACATGTTGGGGCCAAGCTTGTGGGATGTTTGGAATAATGGCAATCAAACAATGGCCATTGAAATGGTTGCGTGTATTGCCATTGAAGCAATATCAATATTGGAGAAGATGCATTCTCGAGGGTATGTACATGGAGATGTAAAGCCTGAAAACTTTCTACTTGGTACTCCTGGGACTCCTGATGAGAAAAAGCTATTTTTAGTTGATCTTGGACTAGCAACTAAATGGCGAGATAGTTCAACCGGTCAGCATGTTGATTATGACCAAAGGCCAGATGTTTTCAGAGGAACAGTACGTTACGCTAGTGTGCATGCTCATTTAGGGAGAACGAGTAGTAGGAGAGATGATCTTGAGTCTCTAGCTTATACCCTTGTGTTCCTTCTCCGGGGTCGCCTCCCCTGGCAAGGTTATCAGGGAGAGAATAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCAACGTCTCCAGAGACCTTGTGTTCTTTCTGTCCACTCCCTTTTAGACAATTTGTTGAACATGTGGTGAACTTGAAGTTTGATGAAGAACCTAATTATGCAAAATATATATCACTATTTGATGGGACTGTAAGTCCAAATCCTGATATCAGGCCAATAAACACAGAGGGTGCACAGAAGCTTATTAATCTGGTTGGTCATAAGAGAGGAAGATTGACAATGGAGGAGGAGGATGATGAACAGCCAAAGAAGAGAATTAGAATGGGTATGCCAGCAACACAATGGATCAGTGTTTATAATGCTCGGAGACCGATGAAGCAAAGGTATCACTATAATGTGGCTGATACAAGGCTTGCTCAGCATATTGAGAAGGGGAACGAGGATGGGTTATATATTAGCAGTGTGGCTTCTTCTCAAAATTTGTGGGCCTTGATTATGGATGCAGGCACTGGTTTCACTTCCCAAGTTTATGAACTTGCTCCGACTTGTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAAAAACTATTACATCAGTGCATTAGCCGGAGCTACTAATGGGAGTTCATTAGTAGTAATGTCCAAGGGTACAACTTTTACGCAGCAGTCATACAAAGTCAGCGATACATTTCCATTTAAGTGGATTAACAAAAAGTGGAAAGAGGACTTTTTTGTTACGTCAATGGCCACTGCAGGAAGTAGATGGGCCATTGTTATGTCTCGGGGTGCTAATTATTCAGACCAAGTAATTTTGACTTTAAAAATCTTTTCCGACTCATTTCTCCAAATTGCCTATGATGCAATGCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

635

Amino Acids

71.03

Weight (kDa)

9.32

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase_fungal	PF17667	81 - 339	6.8e-09	Fungal protein kinase
Pkinase	PF00069	128 - 362	3e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	130 - 294	3.3e-07	Protein tyrosine and serine/threonine kinase
DUF7477	PF24289	429 - 615	4.1e-108	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1389
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	592
AclWI	GGATC	1 cut(s)	1385
AcoI	YGGCCR	3 cut(s)	198, 693, 1779
AcsI	RAATTY	1 cut(s)	1510
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	6 cut(s)	9, 597, 768, 805, 933, 1684
AfiI	CCNNNNNNNGG	3 cut(s)	93, 1024, 1043
AflIII	ACRYGT	2 cut(s)	642, 1153
AgeI	ACCGGT	1 cut(s)	881
AgsI	TTSAA	5 cut(s)	701, 725, 879, 1151, 1168
AhdI	GACNNNNNGTC	1 cut(s)	1224
AjnI	CCWGG	3 cut(s)	475, 808, 1037
AleI	CACNNNNGTG	1 cut(s)	547
AluBI	AGCT	8 cut(s)	35, 400, 482, 657, 832, 1001, 1273, 1646
AluI	AGCT	8 cut(s)	35, 400, 482, 657, 832, 1001, 1273, 1646
Alw21I	GWGCWC	2 cut(s)	510, 1267
Alw26I	GTCTC	5 cut(s)	999, 1100, 1104, 1393, 1818
Alw44I	GTGCAC	1 cut(s)	1263
AlwI	GGATC	1 cut(s)	1385
AlwNI	CAGNNNCTG	3 cut(s)	188, 482, 1541
Ama87I	CYCGRG	3 cut(s)	503, 756, 1815
ApaLI	GTGCAC	1 cut(s)	1263
ApeKI	GCWGC	7 cut(s)	32, 182, 188, 194, 333, 576, 1696
ApoI	RAATTY	1 cut(s)	1510
AseI	ATTAAT	1 cut(s)	1278
AsiGI	ACCGGT	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	792
AspS9I	GGNCC	6 cut(s)	22, 473, 536, 650, 1518, 1800
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	4 cut(s)	169, 215, 646, 1171
AvaI	CYCGRG	3 cut(s)	503, 756, 1815
AvaII	GGWCC	2 cut(s)	473, 536
BaeGI	GKGCMC	1 cut(s)	1267
BalI	TGGCCA	2 cut(s)	695, 1781
BbsI	GAAGAC	1 cut(s)	1574
Bbv12I	GWGCWC	2 cut(s)	510, 1267
BbvI	GCAGC	7 cut(s)	44, 175, 181, 194, 345, 588, 1708
BccI	CCATC	5 cut(s)	631, 1084, 1208, 1469, 1791
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	3 cut(s)	477, 810, 1039
BcnI	CCSGG	1 cut(s)	1025
BcoDI	GTCTC	5 cut(s)	999, 1100, 1104, 1393, 1818
BfaI	CTAG	3 cut(s)	854, 942, 998
BfmI	CTRYAG	2 cut(s)	382, 1785
BglI	GCCNNNNNGGC	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	1449
Bme1390I	CCNGG	4 cut(s)	477, 810, 1025, 1039
Bme18I	GGWCC	2 cut(s)	473, 536
BmeRI	GACNNNNNGTC	1 cut(s)	1224
BmeT110I	CYCGRG	3 cut(s)	503, 756, 1815
BmgT120I	GGNCC	6 cut(s)	22, 473, 536, 650, 1518, 1800
BmiI	GGNNCC	3 cut(s)	23, 373, 651
BmrFI	CCNGG	4 cut(s)	477, 810, 1025, 1039
BmsI	GCATC	3 cut(s)	738, 1522, 1882
BpiI	GAAGAC	1 cut(s)	1574
BpmI	CTGGAG	1 cut(s)	1086
Bpu1102I	GCTNAGC	1 cut(s)	1449
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	1 cut(s)	1025
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	2 cut(s)	1100, 1393
BsaJI	CCNNGG	8 cut(s)	25, 315, 580, 590, 809, 1024, 1037, 1677
BsaWI	WCCGGW	1 cut(s)	881
BsaXI	ACNNNNNCTCC	2 cut(s)	955, 985
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 1024, 1043
Bse118I	RCCGGY	3 cut(s)	4, 200, 881
Bse1I	ACTGG	2 cut(s)	475, 1546
Bse3DI	GCAATG	2 cut(s)	78, 1902
BseBI	CCWGG	3 cut(s)	477, 810, 1039
BseDI	CCNNGG	8 cut(s)	25, 315, 580, 590, 809, 1024, 1037, 1677
BseGI	GGATG	4 cut(s)	670, 1330, 1480, 1537
BseLI	CCNNNNNNNGG	3 cut(s)	93, 1024, 1043
BseMI	GCAATG	2 cut(s)	78, 1902
BseMII	CTCAG	2 cut(s)	342, 1463
BseNI	ACTGG	2 cut(s)	475, 1546
BseRI	GAGGAG	4 cut(s)	221, 333, 1331, 1334
BseSI	GKGCMC	1 cut(s)	1267
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	7 cut(s)	44, 175, 181, 194, 345, 588, 1708
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	592
Bsh1285I	CGRYCG	3 cut(s)	63, 201, 436
BshTI	ACCGGT	1 cut(s)	881
BsiEI	CGRYCG	3 cut(s)	63, 201, 436
BsiHKAI	GWGCWC	2 cut(s)	510, 1267
BsiHKCI	CYCGRG	3 cut(s)	503, 756, 1815
BsiSI	CCGG	6 cut(s)	5, 69, 201, 882, 1024, 1641
BslFI	GGGAC	2 cut(s)	826, 1231
BslI	CCNNNNNNNGG	3 cut(s)	93, 1024, 1043
BsmAI	GTCTC	5 cut(s)	999, 1100, 1104, 1393, 1818
BsmBI	CGTCTC	1 cut(s)	1104
BsmFI	GGGAC	2 cut(s)	826, 1231
BsmI	GAATGC	1 cut(s)	751
Bso31I	GGTCTC	2 cut(s)	1100, 1393
BsoBI	CYCGRG	3 cut(s)	503, 756, 1815
Bsp1286I	GDGCHC	2 cut(s)	510, 1267
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	4 cut(s)	60, 844, 985, 1377
Bsp1720I	GCTNAGC	1 cut(s)	1449
Bsp19I	CCATGG	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	343, 1462
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	23, 373, 651
BspMAI	CTGCAG	1 cut(s)	1789
BspPI	GGATC	1 cut(s)	1385
BspTNI	GGTCTC	2 cut(s)	1100, 1393
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	78, 1902
BsrFI	RCCGGY	3 cut(s)	4, 200, 881
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	475, 1546
BssAI	RCCGGY	3 cut(s)	4, 200, 881
BssECI	CCNNGG	8 cut(s)	25, 315, 580, 590, 809, 1024, 1037, 1677
BssMI	GATC	4 cut(s)	60, 844, 985, 1377
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	315, 580, 1677
Bst2UI	CCWGG	3 cut(s)	477, 810, 1039
Bst4CI	ACNGT	4 cut(s)	287, 364, 931, 1222
Bst6I	CTCTTC	2 cut(s)	351, 1337
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	766
BstC8I	GCNNGC	6 cut(s)	105, 611, 951, 1365, 1446, 1537
BstDEI	CTNAG	2 cut(s)	351, 1449
BstDSI	CCRYGG	3 cut(s)	25, 580, 590
BstF5I	GGATG	4 cut(s)	670, 1330, 1480, 1537
BstFNI	CGCG	1 cut(s)	592
BstKTI	GATC	4 cut(s)	63, 847, 988, 1380
BstMAI	GTCTC	5 cut(s)	999, 1100, 1104, 1393, 1818
BstMBI	GATC	4 cut(s)	60, 844, 985, 1377
BstMCI	CGRYCG	3 cut(s)	63, 201, 436
BstNI	CCWGG	3 cut(s)	477, 810, 1039
BstNSI	RCATGY	4 cut(s)	646, 893, 953, 1157
BstSCI	CCNGG	4 cut(s)	475, 808, 1023, 1037
BstSFI	CTRYAG	2 cut(s)	382, 1785
BstSLI	GKGCMC	1 cut(s)	1267
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	7 cut(s)	44, 175, 181, 194, 345, 588, 1708
BstV2I	GAAGAC	1 cut(s)	1574
BstXI	CCANNNNNNTGG	4 cut(s)	549, 660, 703, 1734
BstZI	CGGCCG	1 cut(s)	198
BtgI	CCRYGG	3 cut(s)	25, 580, 590
BtsCI	GGATG	4 cut(s)	670, 1330, 1480, 1537
BtsI	GCAGTG	5 cut(s)	122, 336, 1498, 1613, 1782
BtsIMutI	CAGTG	9 cut(s)	122, 292, 336, 1387, 1498, 1539, 1613, 1636, 1782
Cac8I	GCNNGC	6 cut(s)	105, 611, 951, 1365, 1446, 1537
CaiI	CAGNNNCTG	3 cut(s)	188, 482, 1541
Cfr10I	RCCGGY	3 cut(s)	4, 200, 881
Cfr13I	GGNCC	6 cut(s)	22, 473, 536, 650, 1518, 1800
Cfr42I	CCGCGG	1 cut(s)	593
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	6 cut(s)	8, 596, 767, 804, 932, 1683
CspAI	ACCGGT	1 cut(s)	881
CspCI	CAANNNNNGTGG	2 cut(s)	1496, 1531
CviAII	CATG	6 cut(s)	581, 643, 770, 890, 950, 1154
CviQI	GTAC	6 cut(s)	8, 596, 767, 804, 932, 1683
DdeI	CTNAG	2 cut(s)	351, 1449
DpnI	GATC	4 cut(s)	62, 846, 987, 1379
DpnII	GATC	4 cut(s)	60, 844, 985, 1377
DraI	TTTAAA	1 cut(s)	1854
DriI	GACNNNNNGTC	1 cut(s)	1224
EaeI	YGGCCR	3 cut(s)	198, 693, 1779
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	351, 1337
Eam1105I	GACNNNNNGTC	1 cut(s)	1224
EarI	CTCTTC	2 cut(s)	351, 1337
EciI	GGCGGA	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	198
Eco130I	CCWWGG	3 cut(s)	315, 580, 1677
Eco31I	GGTCTC	2 cut(s)	1100, 1393
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	2 cut(s)	473, 536
Eco52I	CGGCCG	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	3 cut(s)	503, 756, 1815
EcoRII	CCWGG	3 cut(s)	475, 808, 1037
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	3 cut(s)	315, 580, 1677
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	3 cut(s)	315, 580, 1677
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	6 cut(s)	584, 646, 773, 893, 953, 1157
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 1056, 1088
FaqI	GGGAC	2 cut(s)	826, 1231
FatI	CATG	6 cut(s)	580, 642, 769, 889, 949, 1153
FauI	CCCGC	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	4 cut(s)	677, 1337, 1487, 1544
FspBI	CTAG	3 cut(s)	854, 942, 998
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	1086
HapII	CCGG	6 cut(s)	5, 69, 201, 882, 1024, 1641
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	584, 646, 773, 893, 953, 1157
HindIII	AAGCTT	2 cut(s)	655, 1271
HinfI	GANTC	6 cut(s)	55, 172, 814, 992, 1068, 1868
HpaII	CCGG	6 cut(s)	5, 69, 201, 882, 1024, 1641
HphI	GGTGA	4 cut(s)	169, 215, 646, 1171
Hpy166II	GTNNAC	5 cut(s)	382, 598, 1127, 1162, 1265
Hpy188I	TCNGA	8 cut(s)	60, 177, 419, 923, 1398, 1575, 1834, 1867
Hpy188III	TCNNGA	6 cut(s)	350, 756, 818, 989, 1103, 1235
Hpy8I	GTNNAC	5 cut(s)	382, 598, 1127, 1162, 1265
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	4 cut(s)	287, 364, 931, 1222
HpyCH4IV	ACGT	3 cut(s)	934, 1097, 1772
HpyF3I	CTNAG	2 cut(s)	351, 1449
HpySE526I	ACGT	3 cut(s)	934, 1097, 1772
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	584, 646, 773, 893, 953, 1157
KspI	CCGCGG	1 cut(s)	593
Kzo9I	GATC	4 cut(s)	60, 844, 985, 1377
LmnI	GCTCC	6 cut(s)	29, 346, 479, 1576, 1603, 1643
Lsp1109I	GCAGC	7 cut(s)	44, 175, 181, 194, 345, 588, 1708
LweI	GCATC	3 cut(s)	738, 1522, 1882
MaeI	CTAG	3 cut(s)	854, 942, 998
MaeII	ACGT	3 cut(s)	934, 1097, 1772
MaeIII	GTNAC	4 cut(s)	49, 358, 935, 1768
MalI	GATC	4 cut(s)	62, 846, 987, 1379
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	60, 844, 985, 1377
MhlI	GDGCHC	2 cut(s)	510, 1267
MlsI	TGGCCA	2 cut(s)	695, 1781
MluCI	AATT	9 cut(s)	529, 1142, 1186, 1347, 1510, 1825, 1842, 1881, 1901
MluNI	TGGCCA	2 cut(s)	695, 1781
MlyI	GAGTC	3 cut(s)	808, 1001, 1862
MmeI	TCCRAC	2 cut(s)	1598, 1890
Mox20I	TGGCCA	2 cut(s)	695, 1781
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	792
MscI	TGGCCA	2 cut(s)	695, 1781
MseI	TTAA	6 cut(s)	225, 497, 1278, 1731, 1740, 1853
MslI	CAYNNNNRTG	6 cut(s)	547, 701, 774, 1425, 1732, 1808
Msp20I	TGGCCA	2 cut(s)	695, 1781
MspA1I	CMGCKG	2 cut(s)	185, 592
MspI	CCGG	6 cut(s)	5, 69, 201, 882, 1024, 1641
MspR9I	CCNGG	4 cut(s)	477, 810, 1025, 1039
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	3 cut(s)	477, 810, 1039
MvnI	CGCG	1 cut(s)	592
NciI	CCSGG	1 cut(s)	1025
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	60, 844, 985, 1377
NlaIII	CATG	6 cut(s)	584, 646, 773, 893, 953, 1157
NlaIV	GGNNCC	3 cut(s)	23, 373, 651
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	4 cut(s)	646, 893, 953, 1157
OliI	CACNNNNGTG	1 cut(s)	547
PaeI	GCATGC	1 cut(s)	953
PaeR7I	CTCGAG	2 cut(s)	503, 756
PciI	ACATGT	2 cut(s)	642, 1153
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	55, 172, 1068
PinAI	ACCGGT	1 cut(s)	881
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	3 cut(s)	808, 1000, 1862
PpsI	GAGTC	3 cut(s)	808, 1000, 1862
PscI	ACATGT	2 cut(s)	642, 1153
PshBI	ATTAAT	1 cut(s)	1278
PsiI	TTATAA	1 cut(s)	1389
Psp6I	CCWGG	3 cut(s)	475, 808, 1037
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	3 cut(s)	475, 808, 1037
PspN4I	GGNNCC	3 cut(s)	23, 373, 651
PspPI	GGNCC	6 cut(s)	22, 473, 536, 650, 1518, 1800
PspXI	VCTCGAGB	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	1789
PstNI	CAGNNNCTG	3 cut(s)	188, 482, 1541
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	6 cut(s)	9, 597, 768, 805, 933, 1684
RsaNI	GTAC	6 cut(s)	8, 596, 767, 804, 932, 1683
RseI	CAYNNNNRTG	6 cut(s)	547, 701, 774, 1425, 1732, 1808
SacII	CCGCGG	1 cut(s)	593
SaqAI	TTAA	6 cut(s)	225, 497, 1278, 1731, 1740, 1853
Sau3AI	GATC	4 cut(s)	60, 844, 985, 1377
Sau96I	GGNCC	6 cut(s)	22, 473, 536, 650, 1518, 1800
SchI	GAGTC	3 cut(s)	808, 1001, 1862
ScrFI	CCNGG	4 cut(s)	477, 810, 1025, 1039
SduI	GDGCHC	2 cut(s)	510, 1267
SfaNI	GCATC	3 cut(s)	738, 1522, 1882
SfcI	CTRYAG	2 cut(s)	382, 1785
Sfr274I	CTCGAG	2 cut(s)	503, 756
Sfr303I	CCGCGG	1 cut(s)	593
SgrBI	CCGCGG	1 cut(s)	593
SinI	GGWCC	2 cut(s)	473, 536
SlaI	CTCGAG	2 cut(s)	503, 756
SmiMI	CAYNNNNRTG	6 cut(s)	547, 701, 774, 1425, 1732, 1808
SmlI	CTYRAG	3 cut(s)	503, 756, 989
SmoI	CTYRAG	3 cut(s)	503, 756, 989
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	9 cut(s)	529, 1142, 1186, 1347, 1510, 1825, 1842, 1881, 1901
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	3 cut(s)	854, 942, 998
StyD4I	CCNGG	4 cut(s)	475, 808, 1023, 1037
StyI	CCWWGG	3 cut(s)	315, 580, 1677
TaaI	ACNGT	4 cut(s)	287, 364, 931, 1222
TaiI	ACGT	3 cut(s)	937, 1100, 1775
TaqI	TCGA	3 cut(s)	63, 504, 757
TaqII	GACCGA	2 cut(s)	422, 1417
TasI	AATT	9 cut(s)	529, 1142, 1186, 1347, 1510, 1825, 1842, 1881, 1901
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	3 cut(s)	55, 172, 1068
Tru1I	TTAA	6 cut(s)	225, 497, 1278, 1731, 1740, 1853
Tru9I	TTAA	6 cut(s)	225, 497, 1278, 1731, 1740, 1853
TscAI	CASTG	9 cut(s)	129, 292, 343, 1387, 1498, 1546, 1613, 1636, 1789
TseI	GCWGC	7 cut(s)	32, 182, 188, 194, 333, 576, 1696
TspDTI	ATGAA	6 cut(s)	293, 1191, 1344, 1421, 1578, 1650
TspRI	CASTG	9 cut(s)	129, 292, 343, 1387, 1498, 1546, 1613, 1636, 1789
VneI	GTGCAC	1 cut(s)	1263
VpaK11BI	GGWCC	2 cut(s)	473, 536
VspI	ATTAAT	1 cut(s)	1278
XapI	RAATTY	1 cut(s)	1510
XceI	RCATGY	4 cut(s)	646, 893, 953, 1157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1371
XhoI	CTCGAG	2 cut(s)	503, 756
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	3 cut(s)	854, 942, 998
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.