Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Forward (+)

49926550 .. 49927128

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0349500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTCCCAAAACCTCAAGCAGCGTAGGGTTGCCGACGACCCTAACACCACCACGAGCACCGCAGCCACAATGAACAAGAACAACCACCCAAGCAAACGCGACATGAGAATGAAAATGGCCAAACGCGGCCTAAGGTCACTAGCCGTGGCGGTTTCGCTCCCGGTGGCTCTTCACCTCATCACTATTTACTTGGGATCGACCGACAGCTACCGCACCACCTCCAAGCCCTTCTGGTTCCCGCCTCTGTGGGGCTTGCGTCTGACTTGCTTGGCTTCGAGTTTCTTGATGGGTCTCTCGGCTTGGCTTGTGTGGGCGGAAGGTGGGTTTCACAAGAATCCTGTGGCCTTTCCAGTTTATTTGTCTCAGCTAGTCTTGAGTTTGGCATGGGATCCAATCGTGTTTGGGGCCGGAGCTCCATGGGTCGGGCTCGTTGTGTGCATGGGGATGTTCGGGGCTCTGGTTGGGTGTTCGAAGGTGTTTCAGGACGTGAATCCGACTGCCTGTGATCTCATGAAGCCTTGTTTGGTTTGGGTTGCTTTTTTGGCCGTTGTAAATCTTAAGCTTGTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

21.14

Weight (kDa)

9.6

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	52 - 191	1.8e-31	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	102, 129
AciI	CCGC	6 cut(s)	63, 129, 152, 214, 242, 317
AclWI	GGATC	3 cut(s)	205, 386, 399
AcoI	YGGCCR	2 cut(s)	120, 546
AfiI	CCNNNNNNNGG	2 cut(s)	251, 425
AflII	CTTAAG	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	210, 370, 416, 565
AluI	AGCT	4 cut(s)	210, 370, 416, 565
Alw21I	GWGCWC	2 cut(s)	62, 418
Alw26I	GTCTC	2 cut(s)	299, 369
AlwI	GGATC	3 cut(s)	205, 386, 399
AoxI	GGCC	5 cut(s)	120, 130, 345, 408, 546
ApeKI	GCWGC	2 cut(s)	22, 65
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	473
AxyI	CCTNAGG	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	3 cut(s)	418, 432, 460
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	62, 418
BbvI	GCAGC	2 cut(s)	34, 77
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	2 cut(s)	131, 533
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	299, 369
BfaI	CTAG	2 cut(s)	143, 371
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	3 cut(s)	23, 66, 130
BlsI	GCNGC	3 cut(s)	24, 67, 131
Bme1390I	CCNGG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	239, 393, 409
BmrFI	CCNGG	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	147, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 425
Bse1I	ACTGG	1 cut(s)	353
Bse21I	CCTNAGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	147, 419
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	251, 425
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	34, 77
Bsh1236I	CGCG	2 cut(s)	102, 129
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	62, 418
BsiSI	CCGG	2 cut(s)	164, 411
BslI	CCNNNNNNNGG	2 cut(s)	251, 425
BsmAI	GTCTC	2 cut(s)	299, 369
BsnI	GGCC	5 cut(s)	122, 132, 347, 410, 548
Bso31I	GGTCTC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1286I	GDGCHC	4 cut(s)	62, 418, 432, 460
Bsp143I	GATC	3 cut(s)	197, 391, 508
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	6 cut(s)	63, 129, 152, 214, 242, 317
BspANI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	102, 129
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	239, 393, 409
BspPI	GGATC	3 cut(s)	205, 386, 399
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	473
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	147, 419
BssMI	GATC	3 cut(s)	197, 391, 508
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	134, 366
BstDSI	CCRYGG	2 cut(s)	147, 419
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	102, 129
BstKTI	GATC	3 cut(s)	200, 394, 511
BstMAI	GTCTC	2 cut(s)	299, 369
BstMBI	GATC	3 cut(s)	197, 391, 508
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	102, 129
BstV1I	GCAGC	2 cut(s)	34, 77
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BtgI	CCRYGG	2 cut(s)	147, 419
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	257
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	1 cut(s)	248
CviAII	CATG	5 cut(s)	106, 387, 420, 442, 514
DdeI	CTNAG	2 cut(s)	134, 366
DpnI	GATC	3 cut(s)	199, 393, 510
DpnII	GATC	3 cut(s)	197, 391, 508
EaeI	YGGCCR	2 cut(s)	120, 546
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	3 cut(s)	418, 432, 460
Eco31I	GGTCTC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	3 cut(s)	418, 432, 460
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	109, 390, 423, 445, 517
FaiI	YATR	5 cut(s)	107, 388, 421, 443, 515
FatI	CATG	5 cut(s)	105, 386, 419, 441, 513
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	23, 66, 130
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	3 cut(s)	418, 432, 460
Fsp4HI	GCNGC	3 cut(s)	23, 66, 130
FspBI	CTAG	2 cut(s)	143, 371
GluI	GCNGC	3 cut(s)	23, 66, 130
HaeIII	GGCC	5 cut(s)	122, 132, 347, 410, 548
HapII	CCGG	2 cut(s)	164, 411
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	5 cut(s)	109, 390, 423, 445, 517
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	3 cut(s)	5, 337, 493
HpaII	CCGG	2 cut(s)	164, 411
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	264, 498, 578
Hpy188III	TCNNGA	4 cut(s)	286, 376, 485, 514
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	241, 314, 469
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	134, 366
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	109, 390, 423, 445, 517
Kzo9I	GATC	3 cut(s)	197, 391, 508
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	165, 413, 421
LpnPI	CCDG	8 cut(s)	177, 220, 354, 366, 424, 446, 470, 517
Lsp1109I	GCAGC	2 cut(s)	34, 77
MaeI	CTAG	2 cut(s)	143, 371
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	3 cut(s)	199, 393, 510
MboI	GATC	3 cut(s)	197, 391, 508
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	4 cut(s)	62, 418, 432, 460
MlsI	TGGCCA	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	4 cut(s)	26, 188, 232, 255
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	110, 446
Msp20I	TGGCCA	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	164, 411
MspR9I	CCNGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	102, 129
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	197, 391, 508
NlaIII	CATG	5 cut(s)	109, 390, 423, 445, 517
NlaIV	GGNNCC	3 cut(s)	239, 393, 409
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	473
PagI	TCATGA	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	5, 337, 493
PkrI	GCNGC	3 cut(s)	24, 67, 131
Psp124BI	GAGCTC	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	239, 393, 409
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	110, 446
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	23, 66, 130
Sau3AI	GATC	3 cut(s)	197, 391, 508
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	4 cut(s)	62, 418, 432, 460
SfuI	TTCGAA	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	110, 446
SmlI	CTYRAG	3 cut(s)	17, 376, 560
SmoI	CTYRAG	3 cut(s)	17, 376, 560
SsiI	CCGC	6 cut(s)	63, 129, 152, 214, 242, 317
SspMI	CTAG	2 cut(s)	143, 371
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	419
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	200, 278, 473
TaqII	GACCGA	1 cut(s)	218
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	5, 337, 493
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	22, 65
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	3 cut(s)	89, 128, 530
Vha464I	CTTAAG	1 cut(s)	560
XspI	CTAG	2 cut(s)	143, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.