Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002179

Physical Location & Seq

Genomic Coordinates Reverse (-)

28403409 .. 28409238

Gene Structure 5830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGCCGGTACTGCGTGGAAGGGCCCGTGGAGCAGCTAAAAAGCAGGAGGTTACGAATCCGATCGACGCCGGAGAGGCCATTGCCACCAGAACAAGGCGAAGGCGAGCAGCGGCTGCGGCGGCGGCACTGCCGAATAATAATAACAACAACAACAACAATAATCAGGTGAAGGAGGAAAAGAATCGGAAGGCGGCGGCTGCGGCGGCGGCCGGTGAGGAGAAGAAGGTAGTTGTTAAGGCCGAGAAAAAGAGGATCGTTGAGAAGGAGGAAGTGAAAGAGAAGAAGATGAATGACAGTGGTAGTGGCGGCGTTAGGAGTAATGCCAAGGCTGAAGAAGAAGGCAGCACTGCTCCTCTTCCTGAGAAGGTTACTGTTGGTGGTTCCCCTGTCTACAGATTAGATAGAAAGCTGGGTAAGGGTGGCTTCGGACAAGTGTATGTCGGTCGGCGTGTTTCTGCTATAAATACGAATGAGAGAACTGGACCAGGAGCTGTTGAGGTGGCCTTAAAACTCGAGCACAAAAATAGTAAAGGGTGCAATTATGGACCCCCACAGGAGTGGAAAGTTTATGACACTCTTGGTGGCAGCCATGGTGTGCCGCGGGTACACTATAAGGGCAAGCAAGGCGAGTATTATATTATGGTGATGGACATGTTGGGGCCAAGCTTGTGGGATGTTTGGAATAATGGCAATCAAACAATGGCCATTGAAATGGTTGCGTGTATTGCCATTGAAGCAATATCAATATTGGAGAAGATGCATTCTCGAGGGTATGTACATGGAGATGTAAAGCCTGAAAACTTTCTACTTGGTACTCCTGGGACTCCTGATGAGAAAAAGCTATTTTTAGTTGATCTTGGACTAGCAACTAAATGGCGAGATAGTTCAACCGGTCAGCATGTTGATTATGACCAAAGGCCAGATGTTTTCAGAGGAACAGTACGTTACGCTAGTGTGCATGCTCATTTAGGGAGAACGAGTAGTAGGAGAGATGATCTTGAGTCTCTAGCTTATACCCTTGTGTTCCTTCTCCGTGGTCGCCTTCCCTGGCAAGGATATCAGGGAGAGAATAAAGGATTCCTTGTCTGCAAGAAGAAGATGGCAACGTCTCCAGAGACCTTGTGTTCTTTCTGTCCACTCCCTTTTAGACAATTTGTTGAACATGTGGTGAACTTGAAGTTTGATGAAGAACCTAATTATGCAAAATATATATCACTATTTGATGGGACTGTAAGTCCAAATCCTGATATCAGGCCAATAAACACAGAGGGTGCACAGAAGCTTATTAATCTGGTTGGTCATAAGAGAGGAAGATTGACAATGGAGGAGGAGGATGATGAACAACCAAAGAAGAGAATTAGAATGGGTATGCCAGCAACACAATGGATCAGTGTTTATAATGCTCGGAGACCGATGAAGCAAAGGTATCACTATAATGTGGCTGATGCAAGGCTTGCTCAGCATATTGAGAAGGGGAACGAGGATGGGTTATATATTAGCAGTGTGGCTTCTTCTCAAAATTTGTGGGCCTTGATTATGGATGCAGGCACTGGTTTCACTTCCCAAGTTTATGAACTTGCTCCGACTTGTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAAAAACTATTACATCAGTGCATTAGCCGGAGCTACTAATGGGAGTTCATTAGTAGTAATGTCCAAGGGTACAACTTTTACGCAGCAGTCATACAAAGTCAGCGATACATTTCCATTTAAGTGGATTAACAAAAAGTGGAAAGAGGACTTTTTGTTACGTCAATGGCCACTGCAGGAAGTAGATGGGCCATTGTTATGTCTCGGGGCGCTAATTATTCAGACCAAGTTGTTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

619

Amino Acids

69.24

Weight (kDa)

9.31

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase_fungal	PF17667	84 - 342	6.5e-09	Fungal protein kinase
Pkinase	PF00069	131 - 365	2.8e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	133 - 297	3.1e-07	Protein tyrosine and serine/threonine kinase
DUF7477	PF24289	432 - 592	2.6e-92	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25760 AT2G25760
fragaria_vesca	FvH4_2g35440 FvH4_2g35440 FvH4_6g32280
malus_domestica	MD08G1111700.v1.1 MD09G1204700.v1.1 MD15G1091200.v1.1 MD17G1184900.v1.1
prunus_persica	Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.1G445600_v2.0.a1 Prupe.3G060400_v2.0.a1 Prupe.3G060400_v2.0.a1
pyrus_communis	pycom08g09280 pycom09g12160 pycom15g08520 pycom17g19440
rosa_chinensis	RchiOBHm_Chr2g0140231 RchiOBHm_Chr6g0306451
rosa_laevigata	RLG00000004784 RLG00000008671 RLG00000010797 RLG00000019857
rosa_multiflora	Rmu_sc0002971.1_g000017 Rmu_sc0005446.1_g000008
rosa_roxburghii	Rroxscaffold_2G00104970 Rroxscaffold_7G00161760
rosa_rugosa	Rorug02G0361500 Rorug06G0349500 Rorug06G0349600
rosa_samantha	Rh2AG412400 Rh2BG422700 Rh2CG398600 Rh6AG461700 Rh6BG439300 Rh6CG475800 Rh6DG462500
rosa_wichuraiana	Rw2G033800 Rw6G040240 Rw7G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1398
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	601
AclWI	GGATC	2 cut(s)	260, 1394
AcoI	YGGCCR	3 cut(s)	207, 702, 1787
AcsI	RAATTY	1 cut(s)	1519
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	6 cut(s)	9, 606, 777, 814, 942, 1693
AfiI	CCNNNNNNNGG	2 cut(s)	93, 1052
AflIII	ACRYGT	2 cut(s)	651, 1162
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	6 cut(s)	710, 734, 888, 1160, 1177, 1855
AhdI	GACNNNNNGTC	1 cut(s)	1233
AjnI	CCWGG	3 cut(s)	484, 817, 1046
AleI	CACNNNNGTG	1 cut(s)	556
AluBI	AGCT	8 cut(s)	35, 409, 491, 666, 841, 1010, 1282, 1655
AluI	AGCT	8 cut(s)	35, 409, 491, 666, 841, 1010, 1282, 1655
Alw21I	GWGCWC	2 cut(s)	519, 1276
Alw26I	GTCTC	5 cut(s)	1008, 1109, 1113, 1402, 1826
Alw44I	GTGCAC	1 cut(s)	1272
AlwI	GGATC	2 cut(s)	260, 1394
AlwNI	CAGNNNCTG	3 cut(s)	113, 491, 1550
Ama87I	CYCGRG	3 cut(s)	512, 765, 1823
ApaI	GGGCCC	1 cut(s)	25
ApaLI	GTGCAC	1 cut(s)	1272
ApeKI	GCWGC	7 cut(s)	32, 107, 113, 197, 342, 585, 1705
ApoI	RAATTY	1 cut(s)	1519
AseI	ATTAAT	1 cut(s)	1287
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	1831
AspS9I	GGNCC	7 cut(s)	21, 22, 482, 545, 659, 1527, 1808
AsuHPI	GGTGA	4 cut(s)	178, 224, 655, 1180
AvaI	CYCGRG	3 cut(s)	512, 765, 1823
AvaII	GGWCC	2 cut(s)	482, 545
BaeGI	GKGCMC	2 cut(s)	25, 1276
BalI	TGGCCA	2 cut(s)	704, 1789
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	1583
Bbv12I	GWGCWC	2 cut(s)	519, 1276
BbvI	GCAGC	7 cut(s)	44, 100, 119, 184, 354, 597, 1717
BccI	CCATC	5 cut(s)	640, 1093, 1217, 1478, 1799
BciT130I	CCWGG	3 cut(s)	486, 819, 1048
BcoDI	GTCTC	5 cut(s)	1008, 1109, 1113, 1402, 1826
BfaI	CTAG	4 cut(s)	863, 951, 1007, 1858
BfmI	CTRYAG	2 cut(s)	391, 1793
BfoI	RGCGCY	1 cut(s)	1832
BglI	GCCNNNNNGGC	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	1458
Bme1390I	CCNGG	3 cut(s)	486, 819, 1048
Bme18I	GGWCC	2 cut(s)	482, 545
BmeRI	GACNNNNNGTC	1 cut(s)	1233
BmeT110I	CYCGRG	3 cut(s)	512, 765, 1823
BmgT120I	GGNCC	7 cut(s)	21, 22, 482, 545, 659, 1527, 1808
BmiI	GGNNCC	4 cut(s)	23, 382, 547, 660
BmrFI	CCNGG	3 cut(s)	486, 819, 1048
BmsI	GCATC	3 cut(s)	747, 1435, 1531
BpiI	GAAGAC	1 cut(s)	1583
BpmI	CTGGAG	1 cut(s)	1095
Bpu1102I	GCTNAGC	1 cut(s)	1458
BpuEI	CTTGAG	1 cut(s)	1019
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	2 cut(s)	1109, 1402
BsaJI	CCNNGG	8 cut(s)	25, 324, 589, 599, 818, 1033, 1046, 1686
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 1052
Bse118I	RCCGGY	3 cut(s)	4, 209, 890
Bse1I	ACTGG	2 cut(s)	484, 1555
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	3 cut(s)	486, 819, 1048
BseDI	CCNNGG	8 cut(s)	25, 324, 589, 599, 818, 1033, 1046, 1686
BseGI	GGATG	4 cut(s)	679, 1339, 1489, 1546
BseLI	CCNNNNNNNGG	2 cut(s)	93, 1052
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	351, 1472
BseNI	ACTGG	2 cut(s)	484, 1555
BseRI	GAGGAG	4 cut(s)	230, 342, 1340, 1343
BseSI	GKGCMC	2 cut(s)	25, 1276
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	7 cut(s)	44, 100, 119, 184, 354, 597, 1717
BseYI	CCCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	601
Bsh1285I	CGRYCG	3 cut(s)	63, 210, 445
BshTI	ACCGGT	1 cut(s)	890
BsiEI	CGRYCG	3 cut(s)	63, 210, 445
BsiHKAI	GWGCWC	2 cut(s)	519, 1276
BsiHKCI	CYCGRG	3 cut(s)	512, 765, 1823
BsiSI	CCGG	5 cut(s)	5, 69, 210, 891, 1650
BslFI	GGGAC	2 cut(s)	835, 1240
BslI	CCNNNNNNNGG	2 cut(s)	93, 1052
BsmAI	GTCTC	5 cut(s)	1008, 1109, 1113, 1402, 1826
BsmBI	CGTCTC	1 cut(s)	1113
BsmFI	GGGAC	2 cut(s)	835, 1240
BsmI	GAATGC	1 cut(s)	760
Bso31I	GGTCTC	2 cut(s)	1109, 1402
BsoBI	CYCGRG	3 cut(s)	512, 765, 1823
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	3 cut(s)	25, 519, 1276
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	60, 252, 853, 994, 1386
Bsp1720I	GCTNAGC	1 cut(s)	1458
Bsp19I	CCATGG	1 cut(s)	589
BspCNI	CTCAG	2 cut(s)	352, 1471
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	23, 382, 547, 660
BspMAI	CTGCAG	1 cut(s)	1797
BspPI	GGATC	2 cut(s)	260, 1394
BspTNI	GGTCTC	2 cut(s)	1109, 1402
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	3 cut(s)	4, 209, 890
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	2 cut(s)	484, 1555
BssAI	RCCGGY	3 cut(s)	4, 209, 890
BssECI	CCNNGG	8 cut(s)	25, 324, 589, 599, 818, 1033, 1046, 1686
BssMI	GATC	5 cut(s)	60, 252, 853, 994, 1386
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	324, 589, 1686
Bst2UI	CCWGG	3 cut(s)	486, 819, 1048
Bst4CI	ACNGT	4 cut(s)	296, 373, 940, 1231
Bst6I	CTCTTC	2 cut(s)	360, 1346
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	2 cut(s)	113, 1454
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	6 cut(s)	105, 620, 960, 1374, 1455, 1546
BstDEI	CTNAG	2 cut(s)	360, 1458
BstDSI	CCRYGG	4 cut(s)	25, 589, 599, 1033
BstF5I	GGATG	4 cut(s)	679, 1339, 1489, 1546
BstFNI	CGCG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	1832
BstHHI	GCGC	1 cut(s)	1831
BstKTI	GATC	5 cut(s)	63, 255, 856, 997, 1389
BstMAI	GTCTC	5 cut(s)	1008, 1109, 1113, 1402, 1826
BstMBI	GATC	5 cut(s)	60, 252, 853, 994, 1386
BstMCI	CGRYCG	3 cut(s)	63, 210, 445
BstNI	CCWGG	3 cut(s)	486, 819, 1048
BstNSI	RCATGY	4 cut(s)	655, 902, 962, 1166
BstSCI	CCNGG	3 cut(s)	484, 817, 1046
BstSFI	CTRYAG	2 cut(s)	391, 1793
BstSLI	GKGCMC	2 cut(s)	25, 1276
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	7 cut(s)	44, 100, 119, 184, 354, 597, 1717
BstV2I	GAAGAC	1 cut(s)	1583
BstXI	CCANNNNNNTGG	4 cut(s)	558, 669, 712, 1743
BstZI	CGGCCG	1 cut(s)	207
BtgI	CCRYGG	4 cut(s)	25, 589, 599, 1033
BtsCI	GGATG	4 cut(s)	679, 1339, 1489, 1546
BtsI	GCAGTG	5 cut(s)	125, 345, 1507, 1622, 1790
BtsIMutI	CAGTG	9 cut(s)	125, 301, 345, 1396, 1507, 1548, 1622, 1645, 1790
Cac8I	GCNNGC	6 cut(s)	105, 620, 960, 1374, 1455, 1546
CaiI	CAGNNNCTG	3 cut(s)	113, 491, 1550
CfoI	GCGC	1 cut(s)	1831
Cfr10I	RCCGGY	3 cut(s)	4, 209, 890
Cfr13I	GGNCC	7 cut(s)	21, 22, 482, 545, 659, 1527, 1808
Cfr42I	CCGCGG	1 cut(s)	602
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	6 cut(s)	8, 605, 776, 813, 941, 1692
CspAI	ACCGGT	1 cut(s)	890
CspCI	CAANNNNNGTGG	2 cut(s)	1505, 1540
CviAII	CATG	6 cut(s)	590, 652, 779, 899, 959, 1163
CviQI	GTAC	6 cut(s)	8, 605, 776, 813, 941, 1692
DdeI	CTNAG	2 cut(s)	360, 1458
DpnI	GATC	5 cut(s)	62, 254, 855, 996, 1388
DpnII	GATC	5 cut(s)	60, 252, 853, 994, 1386
DriI	GACNNNNNGTC	1 cut(s)	1233
EaeI	YGGCCR	3 cut(s)	207, 702, 1787
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	360, 1346
Eam1105I	GACNNNNNGTC	1 cut(s)	1233
EarI	CTCTTC	2 cut(s)	360, 1346
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	3 cut(s)	324, 589, 1686
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	1109, 1402
Eco32I	GATATC	2 cut(s)	1058, 1249
Eco47I	GGWCC	2 cut(s)	482, 545
Eco52I	CGGCCG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	3 cut(s)	512, 765, 1823
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	3 cut(s)	484, 817, 1046
EcoRV	GATATC	2 cut(s)	1058, 1249
EcoT14I	CCWWGG	3 cut(s)	324, 589, 1686
EcoT22I	ATGCAT	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	3 cut(s)	324, 589, 1686
Esp3I	CGTCTC	1 cut(s)	1113
FaeI	CATG	6 cut(s)	593, 655, 782, 902, 962, 1166
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 1065, 1097
FaqI	GGGAC	2 cut(s)	835, 1240
FatI	CATG	6 cut(s)	589, 651, 778, 898, 958, 1162
FauI	CCCGC	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	4 cut(s)	686, 1346, 1496, 1553
FriOI	GRGCYC	1 cut(s)	25
FspBI	CTAG	4 cut(s)	863, 951, 1007, 1858
GlaI	GCGC	1 cut(s)	1830
GsaI	CCCAGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	1095
HaeII	RGCGCY	1 cut(s)	1832
HapII	CCGG	5 cut(s)	5, 69, 210, 891, 1650
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	1831
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	593, 655, 782, 902, 962, 1166
Hin6I	GCGC	1 cut(s)	1829
HinP1I	GCGC	1 cut(s)	1829
HindIII	AAGCTT	2 cut(s)	664, 1280
HinfI	GANTC	5 cut(s)	55, 181, 823, 1001, 1077
HpaII	CCGG	5 cut(s)	5, 69, 210, 891, 1650
HphI	GGTGA	4 cut(s)	178, 224, 655, 1180
Hpy166II	GTNNAC	5 cut(s)	391, 607, 1136, 1171, 1274
Hpy188I	TCNGA	7 cut(s)	60, 186, 428, 932, 1407, 1584, 1842
Hpy188III	TCNNGA	6 cut(s)	359, 765, 827, 998, 1112, 1244
Hpy8I	GTNNAC	5 cut(s)	391, 607, 1136, 1171, 1274
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	4 cut(s)	296, 373, 940, 1231
HpyCH4IV	ACGT	3 cut(s)	943, 1106, 1780
HpyF3I	CTNAG	2 cut(s)	360, 1458
HpySE526I	ACGT	3 cut(s)	943, 1106, 1780
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	593, 655, 782, 902, 962, 1166
HspAI	GCGC	1 cut(s)	1829
KspI	CCGCGG	1 cut(s)	602
Kzo9I	GATC	5 cut(s)	60, 252, 853, 994, 1386
LmnI	GCTCC	6 cut(s)	29, 355, 488, 1585, 1612, 1652
Lsp1109I	GCAGC	7 cut(s)	44, 100, 119, 184, 354, 597, 1717
LweI	GCATC	3 cut(s)	747, 1435, 1531
MaeI	CTAG	4 cut(s)	863, 951, 1007, 1858
MaeII	ACGT	3 cut(s)	943, 1106, 1780
MaeIII	GTNAC	4 cut(s)	49, 367, 944, 1776
MalI	GATC	5 cut(s)	62, 254, 855, 996, 1388
MboI	GATC	5 cut(s)	60, 252, 853, 994, 1386
MhlI	GDGCHC	3 cut(s)	25, 519, 1276
MlsI	TGGCCA	2 cut(s)	704, 1789
MluCI	AATT	6 cut(s)	538, 1151, 1195, 1356, 1519, 1833
MluNI	TGGCCA	2 cut(s)	704, 1789
MlyI	GAGTC	2 cut(s)	817, 1010
MmeI	TCCRAC	1 cut(s)	1607
Mox20I	TGGCCA	2 cut(s)	704, 1789
Mph1103I	ATGCAT	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	2 cut(s)	704, 1789
MseI	TTAA	5 cut(s)	234, 506, 1287, 1740, 1749
MslI	CAYNNNNRTG	6 cut(s)	556, 710, 783, 1434, 1741, 1816
Msp20I	TGGCCA	2 cut(s)	704, 1789
MspA1I	CMGCKG	2 cut(s)	110, 601
MspI	CCGG	5 cut(s)	5, 69, 210, 891, 1650
MspR9I	CCNGG	3 cut(s)	486, 819, 1048
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	3 cut(s)	486, 819, 1048
MvnI	CGCG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	5 cut(s)	60, 252, 853, 994, 1386
NlaIII	CATG	6 cut(s)	593, 655, 782, 902, 962, 1166
NlaIV	GGNNCC	4 cut(s)	23, 382, 547, 660
NmeAIII	GCCGAG	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	4 cut(s)	655, 902, 962, 1166
OliI	CACNNNNGTG	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	962
PaeR7I	CTCGAG	2 cut(s)	512, 765
PciI	ACATGT	2 cut(s)	651, 1162
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	3 cut(s)	55, 181, 1077
PinAI	ACCGGT	1 cut(s)	890
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	2 cut(s)	817, 1009
PpsI	GAGTC	2 cut(s)	817, 1009
PscI	ACATGT	2 cut(s)	651, 1162
PshBI	ATTAAT	1 cut(s)	1287
PsiI	TTATAA	1 cut(s)	1398
Psp6I	CCWGG	3 cut(s)	484, 817, 1046
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	3 cut(s)	484, 817, 1046
PspN4I	GGNNCC	4 cut(s)	23, 382, 547, 660
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	7 cut(s)	21, 22, 482, 545, 659, 1527, 1808
PspXI	VCTCGAGB	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	1797
PstNI	CAGNNNCTG	3 cut(s)	113, 491, 1550
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	6 cut(s)	9, 606, 777, 814, 942, 1693
RsaNI	GTAC	6 cut(s)	8, 605, 776, 813, 941, 1692
RseI	CAYNNNNRTG	6 cut(s)	556, 710, 783, 1434, 1741, 1816
SacII	CCGCGG	1 cut(s)	602
SaqAI	TTAA	5 cut(s)	234, 506, 1287, 1740, 1749
Sau3AI	GATC	5 cut(s)	60, 252, 853, 994, 1386
Sau96I	GGNCC	7 cut(s)	21, 22, 482, 545, 659, 1527, 1808
SchI	GAGTC	2 cut(s)	817, 1010
ScrFI	CCNGG	3 cut(s)	486, 819, 1048
SduI	GDGCHC	3 cut(s)	25, 519, 1276
SfaNI	GCATC	3 cut(s)	747, 1435, 1531
SfcI	CTRYAG	2 cut(s)	391, 1793
Sfr274I	CTCGAG	2 cut(s)	512, 765
Sfr303I	CCGCGG	1 cut(s)	602
SgrBI	CCGCGG	1 cut(s)	602
SinI	GGWCC	2 cut(s)	482, 545
SlaI	CTCGAG	2 cut(s)	512, 765
SmiMI	CAYNNNNRTG	6 cut(s)	556, 710, 783, 1434, 1741, 1816
SmlI	CTYRAG	3 cut(s)	512, 765, 998
SmoI	CTYRAG	3 cut(s)	512, 765, 998
SphI	GCATGC	1 cut(s)	962
Sse9I	AATT	6 cut(s)	538, 1151, 1195, 1356, 1519, 1833
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	4 cut(s)	863, 951, 1007, 1858
StyD4I	CCNGG	3 cut(s)	484, 817, 1046
StyI	CCWWGG	3 cut(s)	324, 589, 1686
TaaI	ACNGT	4 cut(s)	296, 373, 940, 1231
TaiI	ACGT	3 cut(s)	946, 1109, 1783
TaqI	TCGA	3 cut(s)	63, 513, 766
TaqII	GACCGA	2 cut(s)	431, 1426
TasI	AATT	6 cut(s)	538, 1151, 1195, 1356, 1519, 1833
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	3 cut(s)	55, 181, 1077
Tru1I	TTAA	5 cut(s)	234, 506, 1287, 1740, 1749
Tru9I	TTAA	5 cut(s)	234, 506, 1287, 1740, 1749
TscAI	CASTG	9 cut(s)	132, 301, 352, 1396, 1507, 1555, 1622, 1645, 1797
TseI	GCWGC	7 cut(s)	32, 107, 113, 197, 342, 585, 1705
TspDTI	ATGAA	6 cut(s)	302, 1200, 1353, 1430, 1587, 1659
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	9 cut(s)	132, 301, 352, 1396, 1507, 1555, 1622, 1645, 1797
VneI	GTGCAC	1 cut(s)	1272
VpaK11BI	GGWCC	2 cut(s)	482, 545
VspI	ATTAAT	1 cut(s)	1287
XapI	RAATTY	1 cut(s)	1519
XceI	RCATGY	4 cut(s)	655, 902, 962, 1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1380
XhoI	CTCGAG	2 cut(s)	512, 765
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	4 cut(s)	863, 951, 1007, 1858
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.