pycom08g10200

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0002777
Physical Location & Seq
Forward (+)
8567488 .. 8570291
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1167 bp
ATGGGATGGGCAAACATCTGCAAAAGACGCATGAAAGTATGCACTGTTGCTTTTCTGATATACCTAGATTACAAGACTTTGCAGCAAAGAGAGAAATGGGCTAACAAAACTAAAACAGATGCTTTATGGGAAAATGCACATAAGCGAAATGCTAAACGTGTTCTCCGTTTGATAGTGGAGTTGGAAGGTTTGTGGGTGAAACTTGGGCAGTATCTGTCTACACGGGCAGATGTACTTCCTGAGGCATACATACGCCTTCTCAAGCAATTGCAGGACTCTCTTCCTCCTCGTCCTTTAGAAGAGGTTTGTCGAACTATACAGAAAGAGTTGGGGAAATCAATGAACGAGTTGTTCTTAGATTTTGTAAATGTTCCTTTGGCAACAGCATCAATAGCACAAGTCCACCGTGCCACCCTGCTCAACGGGCGGGAAGTAGTTGTTAAAGTTCAACATGAGGGCATCAAGACAATTATATTGGAGGACTTGAAGAATGCAAAGTCAATTGTTGACTGGATAGCATGGGCAGAGCCTCAGTACAATTTTAATCCTATGATAGATGAATGGTGCAAAGAATCTCCCAAAGAACTTGACTTCAATCATGAAGCTGAGAACACCAGAACAGTGGCAAAAAATCTTGGCTGCAATACCAAATGTGATGATAACACACGCGCCGATCGAGTGGATGTTTTGATTCCAGAGGTTATTCAGTCAACAGAGAAAGTCCTAATTTCAGAGTTTATGGATGGTATTCGGATAAATGACATAGAAGCGCTGGAAGAATTTGGTGTTGACAAACAAAAGGTTGTTGAAGAAATCACACGTGCTTATGCCCATCAAATGTATGTTGATGGGTTTTTTAATGGAGACCCTCATCCTGGAAACTTTCTTGTGAGCAAGGAACCTCCATATCGTCCTATTTTGCTTGACTTTGGGCTTACAAAGAAATTATCAAGCTCTTTTAAAAAAGCACTAGCAAAGATGTTCTTGGCATCTACCGAGGGGGACCATGTTGCTCTATTGTCTGCCTTTGCAGAAATGGGACTTAAGTTGCGCCTAGATATTCCAGAGCAGGCAATGGAGATAACAACTGTATTCTTCCGAAGTACAACACCTGCCAAAGAGTCTAGTGAAACAATGAAATCTATGGTGGATCAAAGAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 Beta-lactamase WaaY

Protein Analysis

389

Amino Acids

44.38

Weight (kDa)

6.44

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 89 - 338 1.2e-67 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 218
AccII CGCG 1 cut(s) 669
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 1158
AcsI RAATTY 1 cut(s) 779
AcvI CACGTG 1 cut(s) 821
AfaI GTAC 3 cut(s) 234, 536, 1105
AfeI AGCGCT 1 cut(s) 771
AfiI CCNNNNNNNGG 1 cut(s) 875
AflII CTTAAG 1 cut(s) 1043
AflIII ACRYGT 2 cut(s) 157, 818
AgsI TTSAA 4 cut(s) 449, 487, 595, 809
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 2 cut(s) 605, 954
AluI AGCT 2 cut(s) 605, 954
Alw26I GTCTC 1 cut(s) 858
AlwI GGATC 1 cut(s) 1158
AlwNI CAGNNNCTG 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 82, 639
ApoI RAATTY 1 cut(s) 779
AspLEI GCGC 3 cut(s) 671, 772, 1053
AspS9I GGNCC 1 cut(s) 1003
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 1003
AxyI CCTNAGG 1 cut(s) 240
BbrPI CACGTG 1 cut(s) 821
BbvI GCAGC 2 cut(s) 94, 626
BccI CCATC 3 cut(s) 737, 840, 842
BciT130I CCWGG 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 858
BfaI CTAG 4 cut(s) 65, 971, 1055, 1125
BfoI RGCGCY 1 cut(s) 773
BfrI CTTAAG 1 cut(s) 1043
BfuAI ACCTGC 1 cut(s) 1120
BisI GCNGC 2 cut(s) 83, 640
BlsI GCNGC 2 cut(s) 84, 641
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 1 cut(s) 1003
BmgT120I GGNCC 1 cut(s) 1003
BmiI GGNNCC 2 cut(s) 900, 1004
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 4 cut(s) 109, 395, 468, 998
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 996
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 1 cut(s) 515
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 1 cut(s) 996
BseGI GGATG 4 cut(s) 11, 688, 748, 871
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 231, 545, 597
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 94, 626
Bsh1236I CGCG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 676
BslFI GGGAC 2 cut(s) 1016, 1053
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 1 cut(s) 858
BsmFI GGGAC 2 cut(s) 1016, 1053
BsmI GAATGC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 858
Bsp143I GATC 2 cut(s) 673, 1150
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 3 cut(s) 232, 544, 598
BspFNI CGCG 1 cut(s) 669
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 900, 1004
BspMI ACCTGC 1 cut(s) 1120
BspPI GGATC 1 cut(s) 1158
BspTI CTTAAG 1 cut(s) 1043
BspTNI GGTCTC 1 cut(s) 858
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 996
BssMI GATC 2 cut(s) 673, 1150
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 4 cut(s) 46, 407, 622, 1090
Bst6I CTCTTC 2 cut(s) 285, 294
BstAFI CTTAAG 1 cut(s) 1043
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 1071
BstDEI CTNAG 4 cut(s) 240, 355, 531, 606
BstF5I GGATG 4 cut(s) 11, 688, 748, 871
BstFNI CGCG 1 cut(s) 669
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 3 cut(s) 671, 772, 1053
BstKTI GATC 2 cut(s) 676, 1153
BstMAI GTCTC 1 cut(s) 858
BstMBI GATC 2 cut(s) 673, 1150
BstMCI CGRYCG 1 cut(s) 676
BstMWI GCNNNNNNNGC 3 cut(s) 27, 392, 424
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 874
BstUI CGCG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 94, 626
BstXI CCANNNNNNTGG 1 cut(s) 622
Bsu36I CCTNAGG 1 cut(s) 240
BtsCI GGATG 4 cut(s) 11, 688, 748, 871
BtsIMutI CAGTG 2 cut(s) 42, 627
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 1 cut(s) 1071
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 598
CfoI GCGC 3 cut(s) 671, 772, 1053
Cfr13I GGNCC 1 cut(s) 1003
CseI GACGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 233, 535, 1104
CviAII CATG 5 cut(s) 31, 452, 519, 599, 1007
CviJI RGCY 6 cut(s) 101, 529, 605, 639, 934, 954
CviKI_1 RGCY 6 cut(s) 101, 529, 605, 639, 934, 954
CviQI GTAC 3 cut(s) 233, 535, 1104
DdeI CTNAG 4 cut(s) 240, 355, 531, 606
DpnI GATC 2 cut(s) 675, 1152
DpnII GATC 2 cut(s) 673, 1150
DraI TTTAAA 1 cut(s) 961
Eam1104I CTCTTC 2 cut(s) 285, 294
EarI CTCTTC 2 cut(s) 285, 294
Eco31I GGTCTC 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 1003
Eco47III AGCGCT 1 cut(s) 771
Eco72I CACGTG 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 874
FaeI CATG 5 cut(s) 34, 455, 522, 602, 1010
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 2 cut(s) 1016, 1053
FatI CATG 5 cut(s) 30, 451, 518, 598, 1006
FauI CCCGC 1 cut(s) 420
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 83, 640
FokI GGATG 4 cut(s) 18, 695, 755, 858
Fsp4HI GCNGC 2 cut(s) 83, 640
FspBI CTAG 4 cut(s) 65, 971, 1055, 1125
GlaI GCGC 3 cut(s) 670, 771, 1052
GluI GCNGC 2 cut(s) 83, 640
HaeII RGCGCY 1 cut(s) 773
HgaI GACGC 1 cut(s) 36
HhaI GCGC 3 cut(s) 671, 772, 1053
Hin1II CATG 5 cut(s) 34, 455, 522, 602, 1010
Hin6I GCGC 3 cut(s) 669, 770, 1051
HinP1I GCGC 3 cut(s) 669, 770, 1051
HincII GTYRAC 3 cut(s) 508, 711, 790
HindII GTYRAC 3 cut(s) 508, 711, 790
HinfI GANTC 4 cut(s) 275, 572, 691, 1121
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 5 cut(s) 219, 403, 508, 711, 790
Hpy188I TCNGA 4 cut(s) 57, 733, 753, 1100
Hpy188III TCNNGA 5 cut(s) 239, 463, 599, 695, 1064
Hpy8I GTNNAC 5 cut(s) 219, 403, 508, 711, 790
HpyAV CCTTC 2 cut(s) 179, 266
HpyCH4III ACNGT 4 cut(s) 46, 407, 622, 1090
HpyCH4IV ACGT 2 cut(s) 157, 820
HpyCH4V TGCA 9 cut(s) 21, 42, 82, 137, 271, 494, 567, 642, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 392, 424
HpyF3I CTNAG 4 cut(s) 240, 355, 531, 606
HpySE526I ACGT 2 cut(s) 157, 820
Hsp92II CATG 5 cut(s) 34, 455, 522, 602, 1010
HspAI GCGC 3 cut(s) 669, 770, 1051
Kzo9I GATC 2 cut(s) 673, 1150
Lsp1109I GCAGC 2 cut(s) 94, 626
LweI GCATC 4 cut(s) 109, 395, 468, 998
MaeI CTAG 4 cut(s) 65, 971, 1055, 1125
MaeII ACGT 2 cut(s) 157, 820
MalI GATC 2 cut(s) 675, 1152
MboI GATC 2 cut(s) 673, 1150
MboII GAAGA 6 cut(s) 272, 311, 499, 788, 821, 1087
MfeI CAATTG 2 cut(s) 266, 501
MluCI AATT 8 cut(s) 266, 468, 501, 538, 726, 779, 944, 1162
MlyI GAGTC 2 cut(s) 269, 1130
MmeI TCCRAC 1 cut(s) 162
MseI TTAA 6 cut(s) 441, 543, 858, 960, 1044, 1165
MspCI CTTAAG 1 cut(s) 1043
MspR9I CCNGG 1 cut(s) 876
MunI CAATTG 2 cut(s) 266, 501
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 1 cut(s) 876
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 3 cut(s) 27, 392, 424
NdeII GATC 2 cut(s) 673, 1150
NlaIII CATG 5 cut(s) 34, 455, 522, 602, 1010
NlaIV GGNNCC 2 cut(s) 900, 1004
PagI TCATGA 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 1120
PcsI WCGNNNNNNNCGW 2 cut(s) 163, 673
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 572, 691
PfoI TCCNGGA 1 cut(s) 874
PkrI GCNGC 2 cut(s) 84, 641
Ple19I CGATCG 1 cut(s) 676
PleI GAGTC 2 cut(s) 269, 1129
PmaCI CACGTG 1 cut(s) 821
PmlI CACGTG 1 cut(s) 821
PpsI GAGTC 2 cut(s) 269, 1129
Ppu21I YACGTR 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 874
PspCI CACGTG 1 cut(s) 821
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 2 cut(s) 900, 1004
PspPI GGNCC 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 214
PvuI CGATCG 1 cut(s) 676
RsaI GTAC 3 cut(s) 234, 536, 1105
RsaNI GTAC 3 cut(s) 233, 535, 1104
SaqAI TTAA 6 cut(s) 441, 543, 858, 960, 1044, 1165
SatI GCNGC 2 cut(s) 83, 640
Sau3AI GATC 2 cut(s) 673, 1150
Sau96I GGNCC 1 cut(s) 1003
SchI GAGTC 2 cut(s) 269, 1130
ScrFI CCNGG 1 cut(s) 876
SfaNI GCATC 4 cut(s) 109, 395, 468, 998
SinI GGWCC 1 cut(s) 1003
SmlI CTYRAG 2 cut(s) 260, 1043
SmoI CTYRAG 2 cut(s) 260, 1043
Sse9I AATT 8 cut(s) 266, 468, 501, 538, 726, 779, 944, 1162
SsiI CCGC 1 cut(s) 427
SspMI CTAG 4 cut(s) 65, 971, 1055, 1125
StyD4I CCNGG 1 cut(s) 874
TaaI ACNGT 4 cut(s) 46, 407, 622, 1090
TaiI ACGT 2 cut(s) 160, 823
TaqI TCGA 2 cut(s) 310, 676
TasI AATT 8 cut(s) 266, 468, 501, 538, 726, 779, 944, 1162
TatI WGTACW 3 cut(s) 232, 534, 1103
TfiI GAWTC 2 cut(s) 572, 691
Tru1I TTAA 6 cut(s) 441, 543, 858, 960, 1044, 1165
Tru9I TTAA 6 cut(s) 441, 543, 858, 960, 1044, 1165
TscAI CASTG 2 cut(s) 49, 627
TseI GCWGC 2 cut(s) 82, 639
TspDTI ATGAA 5 cut(s) 47, 356, 573, 615, 1151
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 2 cut(s) 49, 627
Vha464I CTTAAG 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 1003
XapI RAATTY 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 4 cut(s) 65, 971, 1055, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.