Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Reverse (-)

21194386 .. 21195647

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGAATGCACCTGGGTTTGCAGAAGAGGGTTCTGCAAGCCTGATAAGCAATTTAGCGGCGTCATCACAAGTAGTTTATCCCGATACTAACCAAATGGTTATCTATGATCCAAGGCAAAAACCTGGGGCAGAAAATTTTCAAACCACAACAGCAGCTGGAGTTCCCACTGCGTCTAAATCCACATCAAATCCCATGATTGCAGCAGTGTGTGGTCAAACAATCAGTGCATTTGATGAAATATTAAAAGCTACGCCACCTGCTTTGGTAGCGTTCTTAGCAAATTTGCCAGTCGTTGAGGGTCCAACACCAGATGTTGATGTCGTGTTATCGATTTGTTTGCAAAATGATGTACCAACACCACAACCTGGGAAGTCAGGGACTGCTCCAATGCCATTGGCATCTATACCCGTCCCTTCTACGAGTGATCTTTCTGTTTCAAGCAAGTCTCATCCCATCCTAAGTGGGTCATCTTTCAAGCCAAGCAGGGGGAAAAGGAAACATTTAGATAGCCAGGAGGACGACGAAATGACGGTCCAGAGTCACCCGCTCCCAAGAGATGCTTTCAGGATACGGCAGATCCAGAAGGCTCGCATTACCACTTCACAGACTGGATCAGCTTCATATGGAAGTGCAATTTCTGGAGATGTATCTGGCAGCACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

223

Amino Acids

23.03

Weight (kDa)

5.56

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	2 cut(s)	59, 548
AclWI	GGATC	3 cut(s)	104, 574, 622
AcsI	RAATTY	2 cut(s)	136, 283
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	368, 488
AgsI	TTSAA	4 cut(s)	7, 143, 441, 478
AjnI	CCWGG	4 cut(s)	13, 124, 367, 513
AluBI	AGCT	3 cut(s)	158, 251, 620
AluI	AGCT	3 cut(s)	158, 251, 620
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	3 cut(s)	104, 574, 622
AlwNI	CAGNNNCTG	2 cut(s)	158, 383
ApeKI	GCWGC	3 cut(s)	155, 203, 657
ApoI	RAATTY	2 cut(s)	136, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	302, 535
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	302, 535
BbvI	GCAGC	2 cut(s)	167, 215
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	590
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	4 cut(s)	15, 126, 369, 515
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	4 cut(s)	60, 156, 204, 658
BlsI	GCNGC	4 cut(s)	61, 157, 205, 659
Bme1390I	CCNGG	4 cut(s)	15, 126, 369, 515
Bme18I	GGWCC	2 cut(s)	302, 535
BmgT120I	GGNCC	2 cut(s)	302, 535
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	4 cut(s)	15, 126, 369, 515
BmsI	GCATC	2 cut(s)	410, 550
BpmI	CTGGAG	2 cut(s)	180, 663
Bsa29I	ATCGAT	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	4 cut(s)	14, 113, 125, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 488
Bse1I	ACTGG	3 cut(s)	290, 616, 667
BseBI	CCWGG	4 cut(s)	15, 126, 369, 515
BseCI	ATCGAT	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	14, 113, 125, 368
BseGI	GGATG	2 cut(s)	451, 456
BseLI	CCNNNNNNNGG	2 cut(s)	368, 488
BseNI	ACTGG	3 cut(s)	290, 616, 667
BseXI	GCAGC	2 cut(s)	167, 215
BshVI	ATCGAT	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	394, 398
BslI	CCNNNNNNNGG	2 cut(s)	368, 488
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	394, 398
BsmI	GAATGC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	109, 427, 579, 614
BspACI	CCGC	2 cut(s)	59, 548
BspDI	ATCGAT	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	104, 574, 622
BsrBI	CCGCTC	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	290, 616, 667
BssECI	CCNNGG	4 cut(s)	14, 113, 125, 368
BssMI	GATC	4 cut(s)	109, 427, 579, 614
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	4 cut(s)	15, 126, 369, 515
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	40, 592
BstDEI	CTNAG	2 cut(s)	277, 461
BstF5I	GGATG	2 cut(s)	451, 456
BstKTI	GATC	4 cut(s)	112, 430, 582, 617
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	4 cut(s)	109, 427, 579, 614
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 269, 278, 663
BstNI	CCWGG	4 cut(s)	15, 126, 369, 515
BstSCI	CCNGG	4 cut(s)	13, 124, 367, 513
BstV1I	GCAGC	2 cut(s)	167, 215
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	451, 456
BtsI	GCAGTG	2 cut(s)	168, 213
BtsIMutI	CAGTG	4 cut(s)	168, 213, 232, 660
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	40, 592
CaiI	CAGNNNCTG	2 cut(s)	158, 383
Cfr13I	GGNCC	2 cut(s)	302, 535
ClaI	ATCGAT	1 cut(s)	332
CseI	GACGC	2 cut(s)	51, 162
Csp6I	GTAC	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	8 cut(s)	42, 158, 251, 481, 513, 590, 620, 666
CviKI_1	RGCY	8 cut(s)	42, 158, 251, 481, 513, 590, 620, 666
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	2 cut(s)	277, 461
DpnI	GATC	4 cut(s)	111, 429, 581, 616
DpnII	GATC	4 cut(s)	109, 427, 579, 614
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	302, 535
EcoRII	CCWGG	4 cut(s)	13, 124, 367, 513
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	108, 197, 407, 625, 627
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	2 cut(s)	394, 398
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	555
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	60, 156, 204, 658
FokI	GGATG	2 cut(s)	438, 443
Fsp4HI	GCNGC	4 cut(s)	60, 156, 204, 658
GluI	GCNGC	4 cut(s)	60, 156, 204, 658
GsuI	CTGGAG	2 cut(s)	180, 663
HgaI	GACGC	2 cut(s)	51, 162
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	1 cut(s)	541
HphI	GGTGA	1 cut(s)	536
Hpy188III	TCNNGA	5 cut(s)	83, 538, 568, 583, 642
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	426, 580
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4V	TGCA	7 cut(s)	11, 23, 38, 203, 230, 343, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 269, 278, 663
HpyF3I	CTNAG	2 cut(s)	277, 461
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	109, 427, 579, 614
LmnI	GCTCC	2 cut(s)	391, 555
Lsp1109I	GCAGC	2 cut(s)	167, 215
LweI	GCATC	2 cut(s)	410, 550
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	4 cut(s)	111, 429, 581, 616
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	4 cut(s)	109, 427, 579, 614
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	579
MluCI	AATT	4 cut(s)	52, 136, 283, 636
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	22, 292, 511
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	4 cut(s)	15, 126, 369, 515
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	4 cut(s)	15, 126, 369, 515
MwoI	GCNNNNNNNGC	4 cut(s)	48, 269, 278, 663
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	4 cut(s)	109, 427, 579, 614
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	542
PaqCI	CACCTGC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	61, 157, 205, 659
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
Psp6I	CCWGG	4 cut(s)	13, 124, 367, 513
PspGI	CCWGG	4 cut(s)	13, 124, 367, 513
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	302, 535
PstNI	CAGNNNCTG	2 cut(s)	158, 383
PsuI	RGATCY	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	4 cut(s)	60, 156, 204, 658
Sau3AI	GATC	4 cut(s)	109, 427, 579, 614
Sau96I	GGNCC	2 cut(s)	302, 535
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	4 cut(s)	15, 126, 369, 515
SetI	ASST	7 cut(s)	16, 127, 160, 253, 262, 370, 622
SfaNI	GCATC	2 cut(s)	410, 550
SinI	GGWCC	2 cut(s)	302, 535
Sse9I	AATT	4 cut(s)	52, 136, 283, 636
SsiI	CCGC	2 cut(s)	59, 548
SspI	AATATT	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	13, 124, 367, 513
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	535
TaqI	TCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	52, 136, 283, 636
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	4 cut(s)	175, 213, 232, 667
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	3 cut(s)	155, 203, 657
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	252, 612
TspRI	CASTG	4 cut(s)	175, 213, 232, 667
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	302, 535
XapI	RAATTY	2 cut(s)	136, 283
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.