Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

65286535 .. 65289137

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG461300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGATCCCAAATACAATGTCCAGGCGGCTTCCTACCAAGCCAACCAGGCCCGCCGCTTGCCTATCTCGGAGGCGGCGCCGATCTACGAGAATCTCCTGACGGCGTTCCCGACCGCGGCGAAATACTGGACCCAATACGCCGAGGCCCAGATGGCGGCGAACGACGACGAGGCCACCAAAAACATATTCAGCAGGTGTTTGATGAAATGCCGCCACCTCCCTCTTTGGCAGACCTACATCAATTTCATCAGAAGAGTCAACGCCAACAACGGCCAAGAGGGTCAAGATTTGATCAGGAAAGCCTTTGATTTCGTGATTAGTTGTGTTGGGGATGATATCACTTCTGGGCCTGTGTGGTTGGACTACATTAGTTTCTTGAAGTCTAGCAACCAGATTGTTTCGCTGCGAAAAGCTTACCAGAAGGCCTTTTTGACTCCTAATCATCACATGGACCAGCTTTGGAGTGAGTATCAGAGTTTCGAAAACACCTACAACAAGGACCTTGCGAAAAGCCTGTTGGCTGAGTTTTCGCACAAGTTCAAAGGCGCCAAGGCGGCTTATTGGGAGAGGAGGAATGTGGTTAAGGACATCGACTTTGGCATGCTTGCTGTGCCGCCCACTGGCTCTCCCAGGGAAGAAGGGCAGTGGATGGCGTGGAAGAAGCTGTTGGCTTTTGACAAAGAAAACCGACAGAGGATAGACATTGCATCGTGCAACAAGCGAATTGAATTGGCATATGAGCAGTGTCTGATGTATCTGTGCCATTACCCTGATATGTGGTATGATTACGCAATGTGGCTTGTGAAAAGTGGTTCCATGGATGCTGCAGTCAAAGTGTTTGAGAGAGCTTTGAAGGCTGTTCCTGAGTCCGAGATGCTGAGGTATGCGTATGCGGAGCTGGAAGAATCCCGGGGAGAAATCAAGGCTGCAAAGAAGATATACGAGAGCCTTTTGGGAGATGGTGGTGCTGGCACATCACCAGGACTTGCTCAAATACAGTTTCTTCGATTCTTAAGGAGGACTGAAGGTATTGAAGCTGCTCGCAGCTACTTTTTAGAAGCTAGAAAATCCCCAAATTGTACTTATAATGTATATGTTGCATATGCGAATATTGCCTTATGTCATGATAAAAATATGAAACTTGCACACAATGTTTTTGAAGCTGGGATGAAACTGTTTATGCATGAGCCTGAGTACATTCTTGAGTATCTAGAACATTTGATTCGTTTGAATGATGATATGAATGCTAGAGCCTTGTTTGAGAGGGCATTATGCTCATTGCCAACAGAGAAATCGGTTGAGATATTGAACCGTTTTGTCAAGTTTGAGCAAACTTATGGAAACTTGACCAGTATGTTGAAGGTTGAGCAAAGAAAAAAAGAAGCACTTTCTAGAATAGGTGGTGAAGAGCAACCTTTATCTTTGGAAAGTTCATTGCAGGATGTTGTATCACGATATAGTTTCAGGAATCTTTGTCCCTGCTCTATGAAGGATTTGGATCATTTAACCCGACAAGAGTCCCTATCTAGAAATAAGAATAGGAAGGTTGATAGTTCCTCCCCTGTTCCGACTGAAGCTAAACCATCCGTGGTACCGGATTCATCAGTGCCAGTGTCTACAAAAGTAGTTTATCCAGCTACAAATCAAACCACACCTACAACAGCTGTTGTTCCAAACACAGTGCTACAAAGCCAAACACCCGTGGCTGGAAATGTTCAAACCACAATGGCACTAGTAGGTGGACATCCAAAGTTTGATGACATACTAAAAACTACACCTGCTTTGGTAGCCTTCTTGACAAATATGCCGCAGCAAGTTGGCGGTCCAACCCCAGATGTGGATGTTGTGTTATCATTTGTTTTGCAGAGTGATATACCAGGCAACTCAACCAGCAGAAAAAGGAAAGCCAACGAATGGGAGGTTGTTAAGGAGGTCAAGCACCAGCCGATATTCCCAGTAGATGTTTTCAAGATGCGGCAGTTGCAGAAGTATCACCCTACCGGTTCTCAAACAGGATCAGCCTCCTGCGGGAGTTCTAGTTGTAGTTCTGGAGATTACACTGTAGTTACTCGCAACACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

694

Amino Acids

78.48

Weight (kDa)

8.46

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	19 - 499	1.9e-136	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	22 - 158	2.3e-26	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	28 - 169	1.8e-10	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	210 - 318	2.3e-20	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	217 - 315	4.3e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
TPR_14	PF13428	257 - 300	1.4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1086
AarI	CACCTGC	2 cut(s)	183, 1786
Acc36I	ACCTGC	2 cut(s)	183, 1786
Acc65I	GGTACC	1 cut(s)	1591
AccB1I	GGYRCC	3 cut(s)	76, 545, 1591
AccB7I	CCANNNNNTGG	1 cut(s)	1914
AccI	GTMKAC	1 cut(s)	1616
AccII	CGCG	1 cut(s)	116
AclWI	GGATC	3 cut(s)	12, 1506, 2023
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	1044, 1593
AcyI	GRCGYC	2 cut(s)	77, 546
AfaI	GTAC	3 cut(s)	1081, 1196, 1593
AfiI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
AflII	CTTAAG	1 cut(s)	1012
AgeI	ACCGGT	1 cut(s)	2000
AhlI	ACTAGT	1 cut(s)	1732
AjnI	CCWGG	5 cut(s)	21, 45, 629, 979, 1876
AjuI	GAANNNNNNNTTGG	6 cut(s)	170, 202, 500, 532, 650, 682
AlwI	GGATC	3 cut(s)	12, 1506, 2023
AlwNI	CAGNNNCTG	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	6 cut(s)	48, 144, 171, 271, 347, 423
ApeKI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1810
ArsI	GACNNNNNNTTYG	3 cut(s)	35, 578, 610
AsiGI	ACCGGT	1 cut(s)	2000
Asp718I	GGTACC	1 cut(s)	1591
AspLEI	GCGC	2 cut(s)	79, 548
AspS9I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
AsuC2I	CCSGG	2 cut(s)	910, 911
AsuHPI	GGTGA	3 cut(s)	969, 1415, 1985
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	4 cut(s)	129, 451, 499, 1823
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	76, 545, 1591
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BccI	CCATC	4 cut(s)	145, 643, 953, 1591
BceAI	ACGGC	2 cut(s)	117, 286
BciT130I	CCWGG	5 cut(s)	23, 47, 631, 981, 1878
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	910, 911
BcuI	ACTAGT	1 cut(s)	1732
BfaI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
BfmI	CTRYAG	2 cut(s)	825, 2061
BfoI	RGCGCY	2 cut(s)	80, 549
BfrI	CTTAAG	1 cut(s)	1012
BfuAI	ACCTGC	2 cut(s)	183, 1786
BglI	GCCNNNNNGGC	3 cut(s)	47, 152, 554
Bme1390I	CCNGG	7 cut(s)	23, 47, 631, 910, 911, 981, 1878
Bme18I	GGWCC	4 cut(s)	129, 451, 499, 1823
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
BmiI	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
BmrFI	CCNGG	7 cut(s)	23, 47, 631, 910, 911, 981, 1878
BmrI	ACTGGG	1 cut(s)	1949
BmsI	GCATC	4 cut(s)	716, 811, 864, 1962
BmuI	ACTGGG	1 cut(s)	1949
BoxI	GACNNNNGTC	1 cut(s)	1516
BpmI	CTGGAG	1 cut(s)	2070
Bpu10I	CCTNAGC	1 cut(s)	878
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	1223
BpuMI	CCSGG	2 cut(s)	910, 911
BsaBI	GATNNNNATC	1 cut(s)	1497
BsaHI	GRCGYC	2 cut(s)	77, 546
BsaWI	WCCGGW	2 cut(s)	1594, 2000
BsaXI	ACNNNNNCTCC	4 cut(s)	610, 640, 2023, 2053
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
Bse118I	RCCGGY	1 cut(s)	2000
Bse1I	ACTGG	5 cut(s)	131, 625, 1350, 1610, 1955
Bse3DI	GCAATG	4 cut(s)	702, 798, 1277, 1433
Bse8I	GATNNNNATC	1 cut(s)	1497
BseBI	CCWGG	5 cut(s)	23, 47, 631, 981, 1878
BseGI	GGATG	8 cut(s)	337, 654, 826, 1173, 1447, 1583, 1744, 1846
BseJI	GATNNNNATC	1 cut(s)	1497
BseLI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
BseMI	GCAATG	4 cut(s)	702, 798, 1277, 1433
BseMII	CTCAG	4 cut(s)	513, 855, 869, 1182
BseNI	ACTGG	5 cut(s)	131, 625, 1350, 1610, 1955
BseRI	GAGGAG	1 cut(s)	583
BseXI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BseYI	CCCAGC	1 cut(s)	1163
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BshNI	GGYRCC	3 cut(s)	76, 545, 1591
BshTI	ACCGGT	1 cut(s)	2000
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	3 cut(s)	910, 1595, 2001
BslFI	GGGAC	2 cut(s)	1461, 1504
BslI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
BsmFI	GGGAC	2 cut(s)	1461, 1504
BsmI	GAATGC	1 cut(s)	1249
BsnI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BsoBI	CYCGRG	1 cut(s)	909
Bsp119I	TTCGAA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	4, 81, 291, 1498, 2015
Bsp19I	CCATGG	1 cut(s)	816
BspANI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BspCNI	CTCAG	4 cut(s)	514, 856, 870, 1183
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	1123
BspLI	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	2 cut(s)	183, 1786
BspPI	GGATC	3 cut(s)	12, 1506, 2023
BspQI	GCTCTTC	1 cut(s)	1401
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	3 cut(s)	76, 545, 1591
BspTI	CTTAAG	1 cut(s)	1012
BsrDI	GCAATG	4 cut(s)	702, 798, 1277, 1433
BsrFI	RCCGGY	1 cut(s)	2000
BsrI	ACTGG	5 cut(s)	131, 625, 1350, 1610, 1955
BssAI	RCCGGY	1 cut(s)	2000
BssMI	GATC	5 cut(s)	4, 81, 291, 1498, 2015
BssNI	GRCGYC	2 cut(s)	77, 546
BssT1I	CCWWGG	2 cut(s)	549, 816
Bst2UI	CCWGG	5 cut(s)	23, 47, 631, 981, 1878
Bst4CI	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
Bst6I	CTCTTC	2 cut(s)	247, 1401
BstACI	GRCGYC	2 cut(s)	77, 546
BstAFI	CTTAAG	1 cut(s)	1012
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	6 cut(s)	52, 59, 602, 606, 970, 1042
BstDEI	CTNAG	4 cut(s)	522, 864, 878, 1191
BstDSI	CCRYGG	4 cut(s)	114, 816, 1587, 1701
BstF5I	GGATG	8 cut(s)	337, 654, 826, 1173, 1447, 1583, 1744, 1846
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	2 cut(s)	80, 549
BstHHI	GCGC	2 cut(s)	79, 548
BstKTI	GATC	5 cut(s)	7, 84, 294, 1501, 2018
BstMBI	GATC	5 cut(s)	4, 81, 291, 1498, 2015
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
BstNI	CCWGG	5 cut(s)	23, 47, 631, 981, 1878
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	1516
BstSCI	CCNGG	7 cut(s)	21, 45, 629, 908, 909, 979, 1876
BstSFI	CTRYAG	2 cut(s)	825, 2061
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BtgI	CCRYGG	4 cut(s)	114, 816, 1587, 1701
BtsCI	GGATG	8 cut(s)	337, 654, 826, 1173, 1447, 1583, 1744, 1846
BtsI	GCAGTG	2 cut(s)	650, 749
BtsIMutI	CAGTG	7 cut(s)	618, 650, 749, 1611, 1617, 1686, 2058
BveI	ACCTGC	2 cut(s)	183, 1786
Cac8I	GCNNGC	6 cut(s)	52, 59, 602, 606, 970, 1042
CaiI	CAGNNNCTG	1 cut(s)	748
CciI	TCATGA	1 cut(s)	1123
CfoI	GCGC	2 cut(s)	79, 548
Cfr10I	RCCGGY	1 cut(s)	2000
Cfr13I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
Cfr42I	CCGCGG	1 cut(s)	117
Cfr9I	CCCGGG	1 cut(s)	909
Csp6I	GTAC	3 cut(s)	1080, 1195, 1592
CspAI	ACCGGT	1 cut(s)	2000
CviAII	CATG	5 cut(s)	448, 601, 817, 1124, 1184
CviQI	GTAC	3 cut(s)	1080, 1195, 1592
DdeI	CTNAG	4 cut(s)	522, 864, 878, 1191
DinI	GGCGCC	2 cut(s)	78, 547
DpnI	GATC	5 cut(s)	6, 83, 293, 1500, 2017
DpnII	GATC	5 cut(s)	4, 81, 291, 1498, 2015
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	247, 1401
EarI	CTCTTC	2 cut(s)	247, 1401
Eco130I	CCWWGG	2 cut(s)	549, 816
Eco147I	AGGCCT	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	4 cut(s)	129, 451, 499, 1823
Eco57I	CTGAAG	2 cut(s)	1044, 1593
Eco88I	CYCGRG	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	5 cut(s)	21, 45, 629, 979, 1876
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	549, 816
EcoT22I	ATGCAT	1 cut(s)	1185
EgeI	GGCGCC	2 cut(s)	78, 547
EheI	GGCGCC	2 cut(s)	78, 547
ErhI	CCWWGG	2 cut(s)	549, 816
FaeI	CATG	5 cut(s)	451, 604, 820, 1127, 1187
FalI	AAGNNNNNCTT	2 cut(s)	1371, 1403
FaqI	GGGAC	2 cut(s)	1461, 1504
FatI	CATG	5 cut(s)	447, 600, 816, 1123, 1183
FauI	CCCGC	2 cut(s)	59, 2021
FauNDI	CATATG	2 cut(s)	736, 1102
FbaI	TGATCA	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	1616
FokI	GGATG	8 cut(s)	344, 661, 833, 1180, 1454, 1570, 1731, 1853
FspBI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
GlaI	GCGC	2 cut(s)	78, 547
GsaI	CCCAGC	1 cut(s)	1167
GsuI	CTGGAG	1 cut(s)	2070
HaeII	RGCGCY	2 cut(s)	80, 549
HaeIII	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
HapII	CCGG	3 cut(s)	910, 1595, 2001
HhaI	GCGC	2 cut(s)	79, 548
Hin1I	GRCGYC	2 cut(s)	77, 546
Hin1II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
Hin6I	GCGC	2 cut(s)	77, 546
HinP1I	GCGC	2 cut(s)	77, 546
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	3 cut(s)	910, 1595, 2001
HphI	GGTGA	3 cut(s)	969, 1415, 1985
Hpy166II	GTNNAC	3 cut(s)	259, 1617, 1742
Hpy188I	TCNGA	6 cut(s)	70, 251, 474, 750, 871, 1569
Hpy8I	GTNNAC	3 cut(s)	259, 1617, 1742
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	8 cut(s)	415, 632, 847, 1019, 1354, 1483, 1537, 1801
HpyCH4III	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
HpyF3I	CTNAG	4 cut(s)	522, 864, 878, 1191
Hsp92I	GRCGYC	2 cut(s)	77, 546
Hsp92II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
HspAI	GCGC	2 cut(s)	77, 546
KasI	GGCGCC	2 cut(s)	76, 545
KpnI	GGTACC	1 cut(s)	1595
Ksp22I	TGATCA	1 cut(s)	291
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	4, 81, 291, 1498, 2015
LguI	GCTCTTC	1 cut(s)	1401
LmnI	GCTCC	1 cut(s)	895
Lsp1109I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
LweI	GCATC	4 cut(s)	716, 811, 864, 1962
MaeI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
MaeIII	GTNAC	1 cut(s)	2065
MalI	GATC	5 cut(s)	6, 83, 293, 1500, 2017
MboI	GATC	5 cut(s)	4, 81, 291, 1498, 2015
MboII	GAAGA	7 cut(s)	264, 647, 670, 914, 946, 995, 1418
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	241, 723, 728, 1075
Mly113I	GGCGCC	2 cut(s)	77, 546
MlyI	GAGTC	4 cut(s)	264, 427, 875, 1526
MmeI	TCCRAC	3 cut(s)	339, 1592, 1850
Mph1103I	ATGCAT	1 cut(s)	1185
MseI	TTAA	4 cut(s)	582, 1013, 1505, 1926
MspA1I	CMGCKG	2 cut(s)	116, 1664
MspCI	CTTAAG	1 cut(s)	1012
MspI	CCGG	3 cut(s)	910, 1595, 2001
MspR9I	CCNGG	7 cut(s)	23, 47, 631, 910, 911, 981, 1878
Mva1269I	GAATGC	1 cut(s)	1249
MvaI	CCWGG	5 cut(s)	23, 47, 631, 981, 1878
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
NarI	GGCGCC	2 cut(s)	77, 546
NciI	CCSGG	2 cut(s)	910, 911
NcoI	CCATGG	1 cut(s)	816
NdeI	CATATG	2 cut(s)	736, 1102
NdeII	GATC	5 cut(s)	4, 81, 291, 1498, 2015
NlaIII	CATG	5 cut(s)	451, 604, 820, 1127, 1187
NlaIV	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
NmeAIII	GCCGAG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	480
PaeI	GCATGC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	1123
PaqCI	CACCTGC	2 cut(s)	183, 1786
PasI	CCCWGGG	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	1401
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1249
PfeI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1468, 1598
PflMI	CCANNNNNTGG	1 cut(s)	1914
PinAI	ACCGGT	1 cut(s)	2000
PleI	GAGTC	4 cut(s)	263, 427, 874, 1525
PluTI	GGCGCC	2 cut(s)	80, 549
PpsI	GAGTC	4 cut(s)	263, 427, 874, 1525
PpuMI	RGGWCCY	1 cut(s)	499
PshAI	GACNNNNGTC	1 cut(s)	1516
PsiI	TTATAA	1 cut(s)	1086
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	5 cut(s)	21, 45, 629, 979, 1876
PspFI	CCCAGC	1 cut(s)	1163
PspGI	CCWGG	5 cut(s)	21, 45, 629, 979, 1876
PspN4I	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
PspPI	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
PspPPI	RGGWCCY	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	1664
RsaI	GTAC	3 cut(s)	1081, 1196, 1593
RsaNI	GTAC	3 cut(s)	1080, 1195, 1592
SacII	CCGCGG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	1401
SaqAI	TTAA	4 cut(s)	582, 1013, 1505, 1926
Sau3AI	GATC	5 cut(s)	4, 81, 291, 1498, 2015
Sau96I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
SchI	GAGTC	4 cut(s)	264, 427, 875, 1526
ScrFI	CCNGG	7 cut(s)	23, 47, 631, 910, 911, 981, 1878
SfaNI	GCATC	4 cut(s)	716, 811, 864, 1962
SfcI	CTRYAG	2 cut(s)	825, 2061
SfoI	GGCGCC	2 cut(s)	78, 547
Sfr303I	CCGCGG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	117
SinI	GGWCC	4 cut(s)	129, 451, 499, 1823
SmaI	CCCGGG	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	1012, 1202
SmoI	CTYRAG	2 cut(s)	1012, 1202
SpeI	ACTAGT	1 cut(s)	1732
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	4 cut(s)	241, 723, 728, 1075
SseBI	AGGCCT	1 cut(s)	425
SspDI	GGCGCC	2 cut(s)	76, 545
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	7 cut(s)	21, 45, 629, 908, 909, 979, 1876
StyI	CCWWGG	2 cut(s)	549, 816
TaaI	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
TaqI	TCGA	3 cut(s)	480, 591, 1006
TasI	AATT	4 cut(s)	241, 723, 728, 1075
TatI	WGTACW	2 cut(s)	1079, 1194
TfiI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1468, 1598
Tru1I	TTAA	4 cut(s)	582, 1013, 1505, 1926
Tru9I	TTAA	4 cut(s)	582, 1013, 1505, 1926
TscAI	CASTG	7 cut(s)	625, 650, 749, 1611, 1617, 1686, 2065
TseI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1810
TspDTI	ATGAA	8 cut(s)	218, 235, 1151, 1184, 1256, 1422, 1502, 1590
TspGWI	ACGGA	1 cut(s)	1576
TspMI	CCCGGG	1 cut(s)	909
TspRI	CASTG	7 cut(s)	625, 650, 749, 1611, 1617, 1686, 2065
Van91I	CCANNNNNTGG	1 cut(s)	1914
Vha464I	CTTAAG	1 cut(s)	1012
VpaK11BI	GGWCC	4 cut(s)	129, 451, 499, 1823
XbaI	TCTAGA	3 cut(s)	1210, 1391, 1526
XceI	RCATGY	1 cut(s)	604
XmaI	CCCGGG	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	1616
XspI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.