Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000379.1

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1064

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

agtccgtcagtacctgctccttcttctacgagtgacctttctgtttcaagcaagtctcatcccatccctagtgggtcatctttcaagccaaccagggggaaacgaaaaaatatagataggaaagacgatgatgaaactacagtccagagccagccactcccaacagatgctttcaggatacggcagatccagaaggctagccgttctgcttcggctagccgcactgcttctcaaacaggatcagtttcgtatggaagtgcaatttctggagatttatctggtagcaccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

97

Amino Acids

10.07

Weight (kDa)

10.1

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	181, 247
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	48, 85
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	181, 247
AlwNI	CAGNNNCTG	1 cut(s)	14
AsuNHI	GCTAGC	2 cut(s)	197, 215
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	186, 197
BciT130I	CCWGG	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	3 cut(s)	69, 198, 216
BfmI	CTRYAG	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	157
BmtI	GCTAGC	2 cut(s)	201, 219
BpmI	CTGGAG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	58, 63
BseLI	CCNNNNNNNGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	186, 239
BspACI	CCGC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	22
BspOI	GCTAGC	2 cut(s)	201, 219
BspPI	GGATC	2 cut(s)	181, 247
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	186, 239
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	152, 199, 217
BstF5I	GGATG	2 cut(s)	58, 63
BstKTI	GATC	2 cut(s)	189, 242
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	186, 239
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	58, 63
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	3 cut(s)	152, 199, 217
CaiI	CAGNNNCTG	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	11
CviJI	RGCY	8 cut(s)	88, 150, 154, 197, 201, 215, 219, 291
CviKI_1	RGCY	8 cut(s)	88, 150, 154, 197, 201, 215, 219, 291
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	2 cut(s)	188, 241
DpnII	GATC	2 cut(s)	186, 239
EcoRII	CCWGG	1 cut(s)	92
FaiI	YATR	2 cut(s)	113, 252
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	45, 50
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	3 cut(s)	69, 198, 216
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	288
Hpy188III	TCNNGA	4 cut(s)	145, 175, 190, 267
HpyAV	CCTTC	2 cut(s)	30, 187
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	186, 239
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	3 cut(s)	69, 198, 216
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	188, 241
MboI	GATC	2 cut(s)	186, 239
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	186, 239
NheI	GCTAGC	2 cut(s)	197, 215
NmuCI	GTSAC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	186, 239
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	3 cut(s)	16, 39, 293
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	3 cut(s)	69, 198, 216
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	1 cut(s)	261
TauI	GCSGC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	229
XspI	CTAG	3 cut(s)	69, 198, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.