Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

62159688 .. 62161763

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGGATCCCAAGTACAATGTCCAGGCGGCTTCCTACCAAGCCAACCAGGCCCGCCGCTTGCCGATCTCGGAGGCGGCGCCGATCTACGAGAATCTCCTGACGGCGTTCCCGACCGCCGCGAAATACTGGACCCAATACGCGGAGGCCCAGATGGCGGCGAACGACGACGAGGCCACCAAAAACATATTCACCAGGTGTTTGATGAAATGCCGCCACCTCCCTCTTTGGCAGACCTACATCAATTTCATCAGAAAAGTCAATGCCAGCAACGGCCAAGAGGGTCAAGATTTGATTAGGAAAGCCTTTGATTTCGTGATTAGTTCTGTTGGGGATGATATCACTTCTGGGCTTGTGTGGTTGGACTACATTAGTTTCTTGAAGTCTAGCAACCAGGTTGTTTCGCTGCGAAAAGCTTACCAGAAGGCCATTTTGACTCCTAATCATCACATGGACCAGCTTTGGACTGAGTATCAGAGTTTTGAAAACACCTGCAACAAGGGCCTTGCGAAAAGCCTGTTGGCTGAGTTTTCGCAGAAGTTCAACGGCGCCAAGGCGGCTTATTGGGAGAGGAGGCATCTGGTTAAGGACATTGACTTTGGCATGCTTGCTGTGCCGCCAGCTGGCTCTCCCAGGGAAGAAGGGCAGTGGATGGCGTGGAAGAAGCTGTTGGCTTTTGACAAAGAAAACCGACAGAGGATAGACATTGCATCGTGCAACAAGCGAATTGAATTGGCATATGAGCAGTGTCTGATGTATCTGTGCCATTACCCTGATATGTGGTATGATTACGCAATGTGGCTTGTGAAAAGTGGTTCCATGGATGCTGCAGTGAAAGTGTTTGAGAGAGCTTTGAGGGCTGTTCCTGAGTCCGAGATGCTGAGGTATGCGTATGCAGAGCTGGAAGAATCCCGGGGAGAAATCAAGGCTGCAAAGAAGATATACGAGAGCCTTTTGGGAGATGGTGGTGCTGGCACATCACCAGGACTTGCTCAAATACAGTTTCTTCGATTCTTAAGGAGGACTGAAGGTATTGAAGCTGCTCGCAGCTACTTTTTAGAAGCTAGAAAATCGCCAAATTGTACTTATAATGTATATGTTGCTTATGCGAATATTGCCTTATGTCATGATAAAAATATGAAACTTGCACACAATGTTTTTGAAGCTGGGATGAAACTGTTTATGCATGAGCCTGAGTACATTCTTGAGTATCTAGAACATTTGATTCGTTTGAATGATGATATGAATGCTAGAGCCTTGTTTGAGAGGGCATTATGCTTATTGCCAACAGAGAAATCGGTTGAGATATTGAACCGTTTTGTCAAGTTTGAGCAAACTTATGGAAACTTGACCAGTATGTTGAAGGTTGAGCAAAGAAAAAATGAAGCACTTTCTAGAATAGGTGGTGAAGAGTCTTTGGAAAGTTCATTGCAGGATGTTGTATCACGATATAGTTTCAGGAATCTCTGTCCCTGCTCTATGAAGGATTTGGATCATTTAACCCGACAAGAGTCCCTGTCTAGAAATATGAATAGGAAGGTTGATAGTTCCTCCCCTGTTCCGACTGAAGCTAAACCATCTGTGGTAGCGGATTCGTCAGTGCCAGTGTCTACAAAAGTAGTTTATCCAGCTACAAATCAAACCACACCTACAACAGCTGTTGTTCCAAACCCAGTGCTACAAAGCCAAACACCCGTGGCTGGAAATGTTCAAACCACAATGGCACTAGTAGGTGGAGATCCAAAGTTTGATGACATACTAAAAACCACACCTGCTTTGGTAGCCTTCTTGACAAATATGCCGCAGCAAGTTGGCGGTCCAACCCTAGATGTGGATGTTGTGTTATCATTTGTTTTGCAGAGTGATATACCAAGCAACTCAACCAGCAGAAAAAGGAAAGCCAACGAATGGGAGGTTGTTAAGGAGGTCAATCACCAGCCGGAACTCCCAGTAGATGTTTTCAAGATGCGGCAGTTGCAGAAGTATCACCGTACTGGTTCTCAAACAGGATCAGCCTCCTACGGGAGTTCTAGTTGTAGTTCTGGAGATTACACTGTAGTTACTCGTAACACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

692

Amino Acids

78.05

Weight (kDa)

7.85

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	19 - 496	2e-136	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	22 - 158	3.8e-26	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	28 - 166	2e-10	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	210 - 318	4.6e-20	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	217 - 315	1.8e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
TPR_14	PF13428	257 - 300	1.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1086
AarI	CACCTGC	2 cut(s)	497, 1777
Acc36I	ACCTGC	2 cut(s)	497, 1777
AccB1I	GGYRCC	2 cut(s)	76, 545
AccB7I	CCANNNNNTGG	1 cut(s)	1905
AccI	GTMKAC	1 cut(s)	1607
AccII	CGCG	2 cut(s)	119, 140
AclWI	GGATC	4 cut(s)	12, 1497, 1730, 2014
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	1044, 1584
AcyI	GRCGYC	2 cut(s)	77, 546
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	4 cut(s)	14, 1081, 1196, 1990
AfiI	CCNNNNNNNGG	7 cut(s)	139, 154, 620, 1697, 1828, 1905, 2019
AflII	CTTAAG	1 cut(s)	1012
AhlI	ACTAGT	1 cut(s)	1723
AjnI	CCWGG	6 cut(s)	21, 45, 191, 390, 629, 979
AjuI	GAANNNNNNNTTGG	6 cut(s)	170, 202, 500, 532, 650, 682
AlwI	GGATC	4 cut(s)	12, 1497, 1730, 2014
AlwNI	CAGNNNCTG	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	6 cut(s)	48, 144, 171, 271, 423, 499
ApeKI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1801
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AspLEI	GCGC	2 cut(s)	79, 548
AspS9I	GGNCC	6 cut(s)	49, 129, 145, 451, 499, 1814
AsuC2I	CCSGG	2 cut(s)	910, 911
AsuHPI	GGTGA	5 cut(s)	181, 969, 1415, 1922, 1976
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	3 cut(s)	129, 451, 1814
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	76, 545
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1813
BccI	CCATC	4 cut(s)	145, 643, 953, 1582
BceAI	ACGGC	3 cut(s)	117, 286, 559
BciT130I	CCWGG	6 cut(s)	23, 47, 193, 392, 631, 981
BcnI	CCSGG	2 cut(s)	910, 911
BcuI	ACTAGT	1 cut(s)	1723
BfaI	CTAG	9 cut(s)	384, 1062, 1211, 1248, 1392, 1518, 1724, 1823, 2028
BfmI	CTRYAG	2 cut(s)	825, 2052
BfoI	RGCGCY	2 cut(s)	80, 549
BfrI	CTTAAG	1 cut(s)	1012
BfuAI	ACCTGC	2 cut(s)	497, 1777
BglI	GCCNNNNNGGC	3 cut(s)	47, 152, 554
Bme1390I	CCNGG	8 cut(s)	23, 47, 193, 392, 631, 910, 911, 981
Bme18I	GGWCC	3 cut(s)	129, 451, 1814
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	6 cut(s)	49, 129, 145, 451, 499, 1814
BmiI	GGNNCC	5 cut(s)	6, 78, 131, 547, 814
BmrFI	CCNGG	8 cut(s)	23, 47, 193, 392, 631, 910, 911, 981
BmrI	ACTGGG	2 cut(s)	1664, 1940
BmsI	GCATC	5 cut(s)	583, 716, 811, 864, 1953
BmuI	ACTGGG	2 cut(s)	1664, 1940
BoxI	GACNNNNGTC	1 cut(s)	1507
BpmI	CTGGAG	1 cut(s)	2061
Bpu10I	CCTNAGC	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	1223
BpuMI	CCSGG	2 cut(s)	910, 911
BsaBI	GATNNNNATC	1 cut(s)	1488
BsaHI	GRCGYC	2 cut(s)	77, 546
BsaJI	CCNNGG	7 cut(s)	549, 629, 630, 816, 909, 910, 1692
BsaXI	ACNNNNNCTCC	2 cut(s)	2014, 2044
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 154, 620, 1697, 1828, 1905, 2019
Bse1I	ACTGG	6 cut(s)	131, 1350, 1601, 1670, 1946, 1996
Bse3DI	GCAATG	3 cut(s)	702, 798, 1424
Bse8I	GATNNNNATC	1 cut(s)	1488
BseBI	CCWGG	6 cut(s)	23, 47, 193, 392, 631, 981
BseDI	CCNNGG	7 cut(s)	549, 629, 630, 816, 909, 910, 1692
BseGI	GGATG	6 cut(s)	337, 654, 826, 1173, 1438, 1837
BseJI	GATNNNNATC	1 cut(s)	1488
BseLI	CCNNNNNNNGG	7 cut(s)	139, 154, 620, 1697, 1828, 1905, 2019
BseMI	GCAATG	3 cut(s)	702, 798, 1424
BseMII	CTCAG	5 cut(s)	456, 513, 855, 869, 1182
BseNI	ACTGG	6 cut(s)	131, 1350, 1601, 1670, 1946, 1996
BseRI	GAGGAG	1 cut(s)	583
BseXI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1813
BseYI	CCCAGC	1 cut(s)	1163
Bsh1236I	CGCG	2 cut(s)	119, 140
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	50, 146, 173, 273, 425, 501
BshNI	GGYRCC	2 cut(s)	76, 545
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	910, 1937
BslFI	GGGAC	2 cut(s)	1452, 1495
BslI	CCNNNNNNNGG	7 cut(s)	139, 154, 620, 1697, 1828, 1905, 2019
BsmFI	GGGAC	2 cut(s)	1452, 1495
BsmI	GAATGC	1 cut(s)	1249
BsnI	GGCC	6 cut(s)	50, 146, 173, 273, 425, 501
BsoBI	CYCGRG	1 cut(s)	909
Bsp143I	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
Bsp19I	CCATGG	1 cut(s)	816
BspANI	GGCC	6 cut(s)	50, 146, 173, 273, 425, 501
BspCNI	CTCAG	5 cut(s)	457, 514, 856, 870, 1183
BspFNI	CGCG	2 cut(s)	119, 140
BspHI	TCATGA	1 cut(s)	1123
BspLI	GGNNCC	5 cut(s)	6, 78, 131, 547, 814
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	2 cut(s)	497, 1777
BspPI	GGATC	4 cut(s)	12, 1497, 1730, 2014
BspT107I	GGYRCC	2 cut(s)	76, 545
BspTI	CTTAAG	1 cut(s)	1012
BsrDI	GCAATG	3 cut(s)	702, 798, 1424
BsrI	ACTGG	6 cut(s)	131, 1350, 1601, 1670, 1946, 1996
BssECI	CCNNGG	7 cut(s)	549, 629, 630, 816, 909, 910, 1692
BssMI	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
BssNI	GRCGYC	2 cut(s)	77, 546
BssT1I	CCWWGG	2 cut(s)	549, 816
Bst2UI	CCWGG	6 cut(s)	23, 47, 193, 392, 631, 981
Bst4CI	ACNGT	5 cut(s)	999, 1176, 1313, 1988, 2053
Bst6I	CTCTTC	1 cut(s)	1401
BstACI	GRCGYC	2 cut(s)	77, 546
BstAFI	CTTAAG	1 cut(s)	1012
BstC8I	GCNNGC	9 cut(s)	52, 59, 265, 602, 606, 618, 622, 970, 1042
BstDEI	CTNAG	5 cut(s)	465, 522, 864, 878, 1191
BstDSI	CCRYGG	2 cut(s)	816, 1692
BstF5I	GGATG	6 cut(s)	337, 654, 826, 1173, 1438, 1837
BstFNI	CGCG	2 cut(s)	119, 140
BstH2I	RGCGCY	2 cut(s)	80, 549
BstHHI	GCGC	2 cut(s)	79, 548
BstKTI	GATC	6 cut(s)	7, 66, 84, 1492, 1738, 2009
BstMBI	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 152, 498, 554, 610, 854, 1112, 1778, 1972
BstNI	CCWGG	6 cut(s)	23, 47, 193, 392, 631, 981
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	1507
BstSCI	CCNGG	8 cut(s)	21, 45, 191, 390, 629, 908, 909, 979
BstSFI	CTRYAG	2 cut(s)	825, 2052
BstUI	CGCG	2 cut(s)	119, 140
BstV1I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1813
BstX2I	RGATCY	2 cut(s)	4, 1735
BstYI	RGATCY	2 cut(s)	4, 1735
BsuRI	GGCC	6 cut(s)	50, 146, 173, 273, 425, 501
BtgI	CCRYGG	2 cut(s)	816, 1692
BtsCI	GGATG	6 cut(s)	337, 654, 826, 1173, 1438, 1837
BtsI	GCAGTG	3 cut(s)	650, 749, 834
BtsIMutI	CAGTG	7 cut(s)	650, 749, 834, 1602, 1608, 1677, 2049
BveI	ACCTGC	2 cut(s)	497, 1777
Cac8I	GCNNGC	9 cut(s)	52, 59, 265, 602, 606, 618, 622, 970, 1042
CaiI	CAGNNNCTG	1 cut(s)	748
CciI	TCATGA	1 cut(s)	1123
CfoI	GCGC	2 cut(s)	79, 548
Cfr13I	GGNCC	6 cut(s)	49, 129, 145, 451, 499, 1814
Cfr9I	CCCGGG	1 cut(s)	909
CsiI	ACCWGGT	2 cut(s)	191, 390
Csp6I	GTAC	4 cut(s)	13, 1080, 1195, 1989
CviAII	CATG	5 cut(s)	448, 601, 817, 1124, 1184
CviQI	GTAC	4 cut(s)	13, 1080, 1195, 1989
DdeI	CTNAG	5 cut(s)	465, 522, 864, 878, 1191
DinI	GGCGCC	2 cut(s)	78, 547
DpnI	GATC	6 cut(s)	6, 65, 83, 1491, 1737, 2008
DpnII	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
DraIII	CACNNNGTG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	1401
EarI	CTCTTC	1 cut(s)	1401
Eco130I	CCWWGG	2 cut(s)	549, 816
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	129, 451, 1814
Eco57I	CTGAAG	2 cut(s)	1044, 1584
Eco88I	CYCGRG	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	6 cut(s)	21, 45, 191, 390, 629, 979
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	549, 816
EcoT22I	ATGCAT	1 cut(s)	1185
EgeI	GGCGCC	2 cut(s)	78, 547
EheI	GGCGCC	2 cut(s)	78, 547
ErhI	CCWWGG	2 cut(s)	549, 816
FaeI	CATG	5 cut(s)	451, 604, 820, 1127, 1187
FaqI	GGGAC	2 cut(s)	1452, 1495
FatI	CATG	5 cut(s)	447, 600, 816, 1123, 1183
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	1607
FokI	GGATG	6 cut(s)	344, 661, 833, 1180, 1445, 1844
FspBI	CTAG	9 cut(s)	384, 1062, 1211, 1248, 1392, 1518, 1724, 1823, 2028
GlaI	GCGC	2 cut(s)	78, 547
GsaI	CCCAGC	1 cut(s)	1167
GsuI	CTGGAG	1 cut(s)	2061
HaeII	RGCGCY	2 cut(s)	80, 549
HaeIII	GGCC	6 cut(s)	50, 146, 173, 273, 425, 501
HapII	CCGG	2 cut(s)	910, 1937
HhaI	GCGC	2 cut(s)	79, 548
Hin1I	GRCGYC	2 cut(s)	77, 546
Hin1II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
Hin6I	GCGC	2 cut(s)	77, 546
HinP1I	GCGC	2 cut(s)	77, 546
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	2 cut(s)	910, 1937
HphI	GGTGA	5 cut(s)	181, 969, 1415, 1922, 1976
Hpy166II	GTNNAC	1 cut(s)	1608
Hpy188I	TCNGA	6 cut(s)	70, 251, 474, 750, 871, 1560
Hpy8I	GTNNAC	1 cut(s)	1608
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	7 cut(s)	415, 632, 1019, 1354, 1474, 1528, 1792
HpyCH4III	ACNGT	5 cut(s)	999, 1176, 1313, 1988, 2053
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 152, 498, 554, 610, 854, 1112, 1778, 1972
HpyF3I	CTNAG	5 cut(s)	465, 522, 864, 878, 1191
Hsp92I	GRCGYC	2 cut(s)	77, 546
Hsp92II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
HspAI	GCGC	2 cut(s)	77, 546
KasI	GGCGCC	2 cut(s)	76, 545
Kzo9I	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
Lsp1109I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1813
LweI	GCATC	5 cut(s)	583, 716, 811, 864, 1953
MabI	ACCWGGT	2 cut(s)	191, 390
MaeI	CTAG	9 cut(s)	384, 1062, 1211, 1248, 1392, 1518, 1724, 1823, 2028
MaeIII	GTNAC	2 cut(s)	2056, 2063
MalI	GATC	6 cut(s)	6, 65, 83, 1491, 1737, 2008
MboI	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
MboII	GAAGA	6 cut(s)	647, 670, 914, 946, 995, 1418
MflI	RGATCY	2 cut(s)	4, 1735
MluCI	AATT	4 cut(s)	241, 723, 728, 1075
Mly113I	GGCGCC	2 cut(s)	77, 546
MlyI	GAGTC	4 cut(s)	427, 875, 1418, 1517
MmeI	TCCRAC	3 cut(s)	339, 1583, 1841
Mph1103I	ATGCAT	1 cut(s)	1185
MseI	TTAA	4 cut(s)	582, 1013, 1496, 1917
MspA1I	CMGCKG	2 cut(s)	620, 1655
MspCI	CTTAAG	1 cut(s)	1012
MspI	CCGG	2 cut(s)	910, 1937
MspR9I	CCNGG	8 cut(s)	23, 47, 193, 392, 631, 910, 911, 981
Mva1269I	GAATGC	1 cut(s)	1249
MvaI	CCWGG	6 cut(s)	23, 47, 193, 392, 631, 981
MvnI	CGCG	2 cut(s)	119, 140
MwoI	GCNNNNNNNGC	9 cut(s)	47, 152, 498, 554, 610, 854, 1112, 1778, 1972
NarI	GGCGCC	2 cut(s)	77, 546
NciI	CCSGG	2 cut(s)	910, 911
NcoI	CCATGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
NlaIII	CATG	5 cut(s)	451, 604, 820, 1127, 1187
NlaIV	GGNNCC	5 cut(s)	6, 78, 131, 547, 814
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	1123
PaqCI	CACCTGC	2 cut(s)	497, 1777
PasI	CCCWGGG	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1249
PfeI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1459, 1589
PflMI	CCANNNNNTGG	1 cut(s)	1905
PleI	GAGTC	4 cut(s)	427, 874, 1417, 1516
PluTI	GGCGCC	2 cut(s)	80, 549
PpsI	GAGTC	4 cut(s)	427, 874, 1417, 1516
PshAI	GACNNNNGTC	1 cut(s)	1507
PsiI	TTATAA	1 cut(s)	1086
Psp6I	CCWGG	6 cut(s)	21, 45, 191, 390, 629, 979
PspFI	CCCAGC	1 cut(s)	1163
PspGI	CCWGG	6 cut(s)	21, 45, 191, 390, 629, 979
PspN4I	GGNNCC	5 cut(s)	6, 78, 131, 547, 814
PspPI	GGNCC	6 cut(s)	49, 129, 145, 451, 499, 1814
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	4, 1735
PvuII	CAGCTG	2 cut(s)	620, 1655
RsaI	GTAC	4 cut(s)	14, 1081, 1196, 1990
RsaNI	GTAC	4 cut(s)	13, 1080, 1195, 1989
SaqAI	TTAA	4 cut(s)	582, 1013, 1496, 1917
Sau3AI	GATC	6 cut(s)	4, 63, 81, 1489, 1735, 2006
Sau96I	GGNCC	6 cut(s)	49, 129, 145, 451, 499, 1814
SchI	GAGTC	4 cut(s)	427, 875, 1418, 1517
ScrFI	CCNGG	8 cut(s)	23, 47, 193, 392, 631, 910, 911, 981
SexAI	ACCWGGT	2 cut(s)	191, 390
SfaNI	GCATC	5 cut(s)	583, 716, 811, 864, 1953
SfcI	CTRYAG	2 cut(s)	825, 2052
SfoI	GGCGCC	2 cut(s)	78, 547
SinI	GGWCC	3 cut(s)	129, 451, 1814
SmaI	CCCGGG	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	1012, 1202
SmoI	CTYRAG	2 cut(s)	1012, 1202
SpeI	ACTAGT	1 cut(s)	1723
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	4 cut(s)	241, 723, 728, 1075
SspDI	GGCGCC	2 cut(s)	76, 545
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	9 cut(s)	384, 1062, 1211, 1248, 1392, 1518, 1724, 1823, 2028
StyD4I	CCNGG	8 cut(s)	21, 45, 191, 390, 629, 908, 909, 979
StyI	CCWWGG	2 cut(s)	549, 816
TaaI	ACNGT	5 cut(s)	999, 1176, 1313, 1988, 2053
TaqI	TCGA	1 cut(s)	1006
TasI	AATT	4 cut(s)	241, 723, 728, 1075
TatI	WGTACW	3 cut(s)	12, 1079, 1194
TfiI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1459, 1589
Tru1I	TTAA	4 cut(s)	582, 1013, 1496, 1917
Tru9I	TTAA	4 cut(s)	582, 1013, 1496, 1917
TscAI	CASTG	7 cut(s)	650, 749, 834, 1602, 1608, 1677, 2056
TseI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1801
TspDTI	ATGAA	9 cut(s)	218, 235, 1151, 1184, 1256, 1395, 1413, 1493, 1541
TspMI	CCCGGG	1 cut(s)	909
TspRI	CASTG	7 cut(s)	650, 749, 834, 1602, 1608, 1677, 2056
Van91I	CCANNNNNTGG	1 cut(s)	1905
Vha464I	CTTAAG	1 cut(s)	1012
VpaK11BI	GGWCC	3 cut(s)	129, 451, 1814
XbaI	TCTAGA	3 cut(s)	1210, 1391, 1517
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1771
XmaI	CCCGGG	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	1607
XspI	CTAG	9 cut(s)	384, 1062, 1211, 1248, 1392, 1518, 1724, 1823, 2028
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.