Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

36887175 .. 36892676

Gene Structure 5502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTGAAGGTTGAGCAAAGAAAAAAAGAAGCGCTTTCTACAACTGATGAAGAGGGACCTTCATCTTTGGAAAGTTCTTTACAAGAGGTTGTATCTCGATATAGTTTCATGGATCTTTGGCCCTGCTCTACGAAGGATCTGGACCATTTAGCCCGACAAGAGTGGCTTGCTAAAAATATTAATAAGAAAGTGGAGAAGTCAACTATGCTAAGTGGACCTGACTTTGCAGACAAGGGTTCTACTGGCCTGATAAGCAATTCATCAGTGTCTGCAAAAGTAGTTTATCCAGATACTAATCAAATGGTTATCTATGATCCAAGGCAAAAACCTGGGGTTGGAAATTTTCAGACCACAACAGTAGCTGGAGTTCTTGCTGCTTCTAGCACCTTGTCAAATCCTGTTGTTGCAGCAGTAGGTGGCCAAACAAGTGCCTTTGATGAAATATTAAAAGTAACACCACCTGCTTTGGTGGCCTTCTTAGCAAATTTACCGATCATTGAAGGTCCAACCCCAGATGTGGATGTTGTGCTATCAATTTGTTTGCAAAGTGATATACCAACACCACAGCCTGCAAAGTCAGGGACTGCCCCTATGCAATTTCCGTCAGTACCTGCTCCTTCTACGAGTGACCTTTCTGTTTCAAGCAAGTCTCATCCCATCCCTAGTGGGTCATCTTTCAAGCCAACCAGGGGGAAACGAAAAAATATAGATAGGAAAGACGATGATGAAACTACAGTCCAGAGCCAGCCACTCCCAACAGATGCTTTCAGGATACGGCAGATCCAGAAGGCTAGCCGTTCTGCTTCGGCTAGCCGCACTGCTTCTCAAACAGGATCAGTTTCGTATGGAAGTGCAATTTCTGGAGATTTATCTGGTAGCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

295

Amino Acids

31.26

Weight (kDa)

6.75

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	2 cut(s)	469, 619
AciI	CCGC	1 cut(s)	814
AclWI	GGATC	5 cut(s)	120, 144, 308, 775, 841
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	340, 484
AfaI	GTAC	1 cut(s)	609
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	335, 517, 689
AgsI	TTSAA	4 cut(s)	7, 500, 642, 679
AjnI	CCWGG	2 cut(s)	328, 686
AluBI	AGCT	2 cut(s)	362, 885
AluI	AGCT	2 cut(s)	362, 885
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	5 cut(s)	120, 144, 308, 775, 841
AlwNI	CAGNNNCTG	4 cut(s)	269, 362, 584, 611
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	4 cut(s)	119, 244, 418, 471
ApeKI	GCWGC	2 cut(s)	374, 407
ApoI	RAATTY	2 cut(s)	340, 484
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	5 cut(s)	56, 120, 142, 215, 503
AsuNHI	GCTAGC	2 cut(s)	791, 809
AvaII	GGWCC	4 cut(s)	56, 142, 215, 503
BalI	TGGCCA	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	361, 419
BccI	CCATC	1 cut(s)	665
BceAI	ACGGC	2 cut(s)	780, 791
BciT130I	CCWGG	2 cut(s)	330, 688
BciVI	GTATCC	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	4 cut(s)	381, 663, 792, 810
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	2 cut(s)	469, 619
BfuI	GTATCC	1 cut(s)	765
BisI	GCNGC	3 cut(s)	375, 408, 814
BlsI	GCNGC	3 cut(s)	376, 409, 815
Bme1390I	CCNGG	2 cut(s)	330, 688
Bme18I	GGWCC	4 cut(s)	56, 142, 215, 503
BmgT120I	GGNCC	5 cut(s)	56, 120, 142, 215, 503
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	330, 688
BmsI	GCATC	1 cut(s)	751
BmtI	GCTAGC	2 cut(s)	795, 813
BpmI	CTGGAG	2 cut(s)	384, 882
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	317, 329, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 517, 689
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	330, 688
BseDI	CCNNGG	3 cut(s)	317, 329, 687
BseGI	GGATG	3 cut(s)	526, 652, 657
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	335, 517, 689
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	361, 419
BshFI	GGCC	4 cut(s)	121, 246, 420, 473
BslFI	GGGAC	2 cut(s)	69, 595
BslI	CCNNNNNNNGG	3 cut(s)	335, 517, 689
BsmAI	GTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	69, 595
BsnI	GGCC	4 cut(s)	121, 246, 420, 473
Bsp143I	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
BspACI	CCGC	1 cut(s)	814
BspANI	GGCC	4 cut(s)	121, 246, 420, 473
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	2 cut(s)	469, 619
BspOI	GCTAGC	2 cut(s)	795, 813
BspPI	GGATC	5 cut(s)	120, 144, 308, 775, 841
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	317, 329, 687
BssMI	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	330, 688
Bst4CI	ACNGT	2 cut(s)	358, 736
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	5 cut(s)	168, 570, 746, 793, 811
BstDEI	CTNAG	2 cut(s)	209, 478
BstF5I	GGATG	3 cut(s)	526, 652, 657
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	6 cut(s)	115, 139, 316, 495, 783, 836
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 470, 479
BstNI	CCWGG	2 cut(s)	330, 688
BstSCI	CCNGG	2 cut(s)	328, 686
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	2 cut(s)	361, 419
BstX2I	RGATCY	3 cut(s)	112, 136, 780
BstYI	RGATCY	3 cut(s)	112, 136, 780
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	121, 246, 420, 473
BtsCI	GGATG	3 cut(s)	526, 652, 657
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	270, 816
BveI	ACCTGC	2 cut(s)	469, 619
Cac8I	GCNNGC	5 cut(s)	168, 570, 746, 793, 811
CaiI	CAGNNNCTG	4 cut(s)	269, 362, 584, 611
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	5 cut(s)	56, 120, 142, 215, 503
Csp6I	GTAC	1 cut(s)	608
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	209, 478
DpnI	GATC	6 cut(s)	114, 138, 315, 494, 782, 835
DpnII	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	4 cut(s)	56, 142, 215, 503
Eco47III	AGCGCT	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	328, 686
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	112
FaiI	YATR	8 cut(s)	102, 110, 206, 312, 554, 593, 707, 846
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 150, 182
FaqI	GGGAC	2 cut(s)	69, 595
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	375, 408, 814
FokI	GGATG	3 cut(s)	533, 639, 644
Fsp4HI	GCNGC	3 cut(s)	375, 408, 814
FspBI	CTAG	4 cut(s)	381, 663, 792, 810
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	375, 408, 814
GsuI	CTGGAG	2 cut(s)	384, 882
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	121, 246, 420, 473
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	201, 215
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	7 cut(s)	96, 140, 287, 739, 769, 784, 861
Hpy8I	GTNNAC	2 cut(s)	201, 215
HpyAV	CCTTC	6 cut(s)	69, 127, 484, 494, 627, 781
HpyCH4III	ACNGT	2 cut(s)	358, 736
HpyCH4V	TGCA	7 cut(s)	227, 272, 407, 544, 572, 595, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 470, 479
HpyF3I	CTNAG	2 cut(s)	209, 478
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	2 cut(s)	361, 419
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	4 cut(s)	381, 663, 792, 810
MaeIII	GTNAC	2 cut(s)	451, 626
MalI	GATC	6 cut(s)	114, 138, 315, 494, 782, 835
MboI	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	3 cut(s)	112, 136, 780
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	6 cut(s)	256, 340, 484, 534, 596, 855
MluNI	TGGCCA	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	316, 530
MnlI	CCTC	2 cut(s)	46, 79
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	2 cut(s)	180, 446
Msp20I	TGGCCA	1 cut(s)	420
MspR9I	CCNGG	2 cut(s)	330, 688
MvaI	CCWGG	2 cut(s)	330, 688
MwoI	GCNNNNNNNGC	3 cut(s)	252, 470, 479
NdeII	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
NheI	GCTAGC	2 cut(s)	791, 809
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	376, 409, 815
PpuMI	RGGWCCY	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	328, 686
PspGI	CCWGG	2 cut(s)	328, 686
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	5 cut(s)	56, 120, 142, 215, 503
PspPPI	RGGWCCY	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PstNI	CAGNNNCTG	4 cut(s)	269, 362, 584, 611
PsuI	RGATCY	3 cut(s)	112, 136, 780
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	180, 446
SatI	GCNGC	3 cut(s)	375, 408, 814
Sau3AI	GATC	6 cut(s)	112, 136, 313, 492, 780, 833
Sau96I	GGNCC	5 cut(s)	56, 120, 142, 215, 503
ScrFI	CCNGG	2 cut(s)	330, 688
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	4 cut(s)	56, 142, 215, 503
Sse9I	AATT	6 cut(s)	256, 340, 484, 534, 596, 855
SsiI	CCGC	1 cut(s)	814
SspI	AATATT	2 cut(s)	178, 444
SspMI	CTAG	4 cut(s)	381, 663, 792, 810
StyD4I	CCNGG	2 cut(s)	328, 686
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	358, 736
TaqI	TCGA	1 cut(s)	97
TasI	AATT	6 cut(s)	256, 340, 484, 534, 596, 855
TauI	GCSGC	1 cut(s)	816
Tru1I	TTAA	2 cut(s)	180, 446
Tru9I	TTAA	2 cut(s)	180, 446
TscAI	CASTG	2 cut(s)	270, 823
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	2 cut(s)	374, 407
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	6 cut(s)	51, 63, 97, 249, 453, 741
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	270, 823
VpaK11BI	GGWCC	4 cut(s)	56, 142, 215, 503
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	2 cut(s)	340, 484
XspI	CTAG	4 cut(s)	381, 663, 792, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.