Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009440.1

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

14411 .. 19809

Gene Structure 5399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009440.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggatcttccttctcaggtatggaaacaatttgccaaatttgagcaaacttttggagatctggctagcatgttgaaggttgagcaaagaaaaaaagaagcactttctacaactgatgaagagggaccttcatctttggaaagttctttacaagaggttgtatctcgatatagtttcatggatctttggccctgctctacgaaggatctggaccatttagcccgacaagagtggcttgctaaaaatattaataagaaagtggagaagtcaactatgctaagtggacctgactttgcagacaagggttctactggcctgataagcaattcatcagtgtctgcaaaagtagtttatccagatactaatcaaatggttatctatgatccaaggcaaaaacctggggttggaaattttcagaccacaacagtagctggagttcttgctgcttctagcaccttgtcaaatcctgttgttgcagcagtaggtggccaaacaagtgcctttgatgaaatattaaaagtaacaccacctgctttggtggccttcttagcaaatttaccgatcattgaaggtccaaccccagatgtggatgttgtgctatcaatttgtttgcaaagtgatataccaacaccacagcctgcaaagtcagggactgcccctatgcaatttccgtcagtacctgctccttcttctacgagtgacctttctgtttcaagcaagtctcatcccatccctagtgggtcatctttcaagccaaccagggggaaacgaaaaaatatagataggaaagacgatgatgaaactacagtccagagccagccactcccaacagatgctttcaggatacggcagatccagaaggctagccgttctgcttcggctagccgcactgcttctcaaacaggatcagtttcgtatggaagtgcaatttctggagatttatctgggaaagacgatgatgaaactacagtccagagccagccactcccaacagatgctttcaggatacggcagatccagaaggctagccgttctgcttcggctagccgcactgcttctcaaacaggatcagtttcgtatggaagtgcaatttctggagatttatctggtagcaccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

373

Amino Acids

39.61

Weight (kDa)

6.21

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	2 cut(s)	538, 688
AciI	CCGC	2 cut(s)	886, 1048
AclWI	GGATC	8 cut(s)	12, 189, 213, 377, 847, 913, 1009, 1075
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	3 cut(s)	38, 409, 553
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	404, 586, 761
AgsI	TTSAA	4 cut(s)	76, 569, 714, 751
AjnI	CCWGG	2 cut(s)	397, 758
AluBI	AGCT	2 cut(s)	431, 1119
AluI	AGCT	2 cut(s)	431, 1119
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	8 cut(s)	12, 189, 213, 377, 847, 913, 1009, 1075
AlwNI	CAGNNNCTG	4 cut(s)	338, 431, 653, 680
AoxI	GGCC	4 cut(s)	188, 313, 487, 540
ApeKI	GCWGC	2 cut(s)	443, 476
ApoI	RAATTY	3 cut(s)	38, 409, 553
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	5 cut(s)	125, 189, 211, 284, 572
AsuNHI	GCTAGC	5 cut(s)	65, 863, 881, 1025, 1043
AvaII	GGWCC	4 cut(s)	125, 211, 284, 572
BalI	TGGCCA	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	430, 488
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	4 cut(s)	852, 863, 1014, 1025
BciT130I	CCWGG	2 cut(s)	399, 760
BciVI	GTATCC	2 cut(s)	837, 999
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	7 cut(s)	66, 450, 735, 864, 882, 1026, 1044
BfmI	CTRYAG	2 cut(s)	804, 966
BfuAI	ACCTGC	2 cut(s)	538, 688
BfuI	GTATCC	2 cut(s)	837, 999
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	4 cut(s)	444, 477, 886, 1048
BlsI	GCNGC	4 cut(s)	445, 478, 887, 1049
Bme1390I	CCNGG	2 cut(s)	399, 760
Bme18I	GGWCC	4 cut(s)	125, 211, 284, 572
BmgT120I	GGNCC	5 cut(s)	125, 189, 211, 284, 572
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	399, 760
BmsI	GCATC	2 cut(s)	823, 985
BmtI	GCTAGC	5 cut(s)	69, 867, 885, 1029, 1047
BpmI	CTGGAG	3 cut(s)	453, 954, 1116
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	386, 398, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 586, 761
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	399, 760
BseDI	CCNNGG	3 cut(s)	386, 398, 759
BseGI	GGATG	3 cut(s)	595, 724, 729
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	3 cut(s)	404, 586, 761
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	430, 488
BshFI	GGCC	4 cut(s)	190, 315, 489, 542
BslFI	GGGAC	2 cut(s)	138, 664
BslI	CCNNNNNNNGG	3 cut(s)	404, 586, 761
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	2 cut(s)	138, 664
BsnI	GGCC	4 cut(s)	190, 315, 489, 542
BspACI	CCGC	2 cut(s)	886, 1048
BspANI	GGCC	4 cut(s)	190, 315, 489, 542
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	2 cut(s)	538, 688
BspOI	GCTAGC	5 cut(s)	69, 867, 885, 1029, 1047
BspPI	GGATC	8 cut(s)	12, 189, 213, 377, 847, 913, 1009, 1075
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	386, 398, 759
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	399, 760
Bst4CI	ACNGT	3 cut(s)	427, 808, 970
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	9 cut(s)	67, 237, 639, 818, 865, 883, 980, 1027, 1045
BstDEI	CTNAG	3 cut(s)	15, 278, 547
BstF5I	GGATG	3 cut(s)	595, 724, 729
BstMAI	GTCTC	1 cut(s)	726
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 539, 548
BstNI	CCWGG	2 cut(s)	399, 760
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	397, 758
BstSFI	CTRYAG	2 cut(s)	804, 966
BstV1I	GCAGC	2 cut(s)	430, 488
BstX2I	RGATCY	6 cut(s)	4, 58, 181, 205, 852, 1014
BstYI	RGATCY	6 cut(s)	4, 58, 181, 205, 852, 1014
BsuI	GTATCC	2 cut(s)	837, 999
BsuRI	GGCC	4 cut(s)	190, 315, 489, 542
BtsCI	GGATG	3 cut(s)	595, 724, 729
BtsI	GCAGTG	2 cut(s)	888, 1050
BtsIMutI	CAGTG	3 cut(s)	339, 888, 1050
BveI	ACCTGC	2 cut(s)	538, 688
Cac8I	GCNNGC	9 cut(s)	67, 237, 639, 818, 865, 883, 980, 1027, 1045
CaiI	CAGNNNCTG	4 cut(s)	338, 431, 653, 680
Cfr13I	GGNCC	5 cut(s)	125, 189, 211, 284, 572
Csp6I	GTAC	1 cut(s)	677
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	2 cut(s)	70, 178
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	3 cut(s)	15, 278, 547
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	4 cut(s)	125, 211, 284, 572
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	397, 758
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	73, 181
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 219, 251
FaqI	GGGAC	2 cut(s)	138, 664
FatI	CATG	2 cut(s)	69, 177
Fnu4HI	GCNGC	4 cut(s)	444, 477, 886, 1048
FokI	GGATG	3 cut(s)	602, 711, 716
Fsp4HI	GCNGC	4 cut(s)	444, 477, 886, 1048
FspBI	CTAG	7 cut(s)	66, 450, 735, 864, 882, 1026, 1044
GluI	GCNGC	4 cut(s)	444, 477, 886, 1048
GsuI	CTGGAG	3 cut(s)	453, 954, 1116
HaeIII	GGCC	4 cut(s)	190, 315, 489, 542
Hin1II	CATG	2 cut(s)	73, 181
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	270, 284
Hpy188I	TCNGA	1 cut(s)	417
Hpy8I	GTNNAC	2 cut(s)	270, 284
HpyAV	CCTTC	9 cut(s)	21, 70, 138, 196, 553, 563, 696, 853, 1015
HpyCH4III	ACNGT	3 cut(s)	427, 808, 970
HpyCH4V	TGCA	8 cut(s)	296, 341, 476, 613, 641, 664, 926, 1088
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 539, 548
HpyF3I	CTNAG	3 cut(s)	15, 278, 547
Hsp92II	CATG	2 cut(s)	73, 181
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	2 cut(s)	430, 488
LweI	GCATC	2 cut(s)	823, 985
MaeI	CTAG	7 cut(s)	66, 450, 735, 864, 882, 1026, 1044
MaeIII	GTNAC	2 cut(s)	520, 698
MboII	GAAGA	2 cut(s)	131, 681
MflI	RGATCY	6 cut(s)	4, 58, 181, 205, 852, 1014
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	9 cut(s)	29, 38, 325, 409, 553, 603, 665, 927, 1089
MluNI	TGGCCA	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	385, 599
MnlI	CCTC	2 cut(s)	115, 148
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	2 cut(s)	249, 515
Msp20I	TGGCCA	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	399, 760
MvaI	CCWGG	2 cut(s)	399, 760
MwoI	GCNNNNNNNGC	3 cut(s)	321, 539, 548
NheI	GCTAGC	5 cut(s)	65, 863, 881, 1025, 1043
NlaIII	CATG	2 cut(s)	73, 181
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	538
PkrI	GCNGC	4 cut(s)	445, 478, 887, 1049
PpuMI	RGGWCCY	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	397, 758
PspGI	CCWGG	2 cut(s)	397, 758
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	5 cut(s)	125, 189, 211, 284, 572
PspPPI	RGGWCCY	1 cut(s)	125
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PstNI	CAGNNNCTG	4 cut(s)	338, 431, 653, 680
PsuI	RGATCY	6 cut(s)	4, 58, 181, 205, 852, 1014
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	249, 515
SatI	GCNGC	4 cut(s)	444, 477, 886, 1048
Sau96I	GGNCC	5 cut(s)	125, 189, 211, 284, 572
ScrFI	CCNGG	2 cut(s)	399, 760
SfaNI	GCATC	2 cut(s)	823, 985
SfcI	CTRYAG	2 cut(s)	804, 966
SinI	GGWCC	4 cut(s)	125, 211, 284, 572
Sse9I	AATT	9 cut(s)	29, 38, 325, 409, 553, 603, 665, 927, 1089
SsiI	CCGC	2 cut(s)	886, 1048
SspI	AATATT	2 cut(s)	247, 513
SspMI	CTAG	7 cut(s)	66, 450, 735, 864, 882, 1026, 1044
StyD4I	CCNGG	2 cut(s)	397, 758
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	427, 808, 970
TaqI	TCGA	1 cut(s)	166
TasI	AATT	9 cut(s)	29, 38, 325, 409, 553, 603, 665, 927, 1089
TauI	GCSGC	2 cut(s)	888, 1050
Tru1I	TTAA	2 cut(s)	249, 515
Tru9I	TTAA	2 cut(s)	249, 515
TscAI	CASTG	3 cut(s)	339, 895, 1057
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	443, 476
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	7 cut(s)	120, 132, 166, 318, 522, 813, 975
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	3 cut(s)	339, 895, 1057
VpaK11BI	GGWCC	4 cut(s)	125, 211, 284, 572
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	3 cut(s)	38, 409, 553
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	7 cut(s)	66, 450, 735, 864, 882, 1026, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.