Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

36848501 .. 36871099

Gene Structure 22599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGAAATCGAGAAACAAGCGGATGATCCAGGTAGCAAAGCCATGGAGGACAAATACAATGTTGAAGCCACTGAAAATCAAGCCAACGAAGCGCTGCGTTTGCCTATTACAGAGGCAGCACCCATATATGAGCAGATTCTGACTGTGTTTCCCACTGCAGCAAAATATTGGAAGCAATATGTGGAGGCACAGATTGCTGTAAATAATGATGATGCTACAAAACAGATATTTAGCCGGTGTTTGTTGATTTGTCTTCAAGTTCCACTCTGGCGATGCTACATTCGTTTCATCAGAAAGGTCAATGACAAGAAGGGGGTGGAGGGTCAAGAAGAGACTAGAAAAGCTTTTGATTTTATGCTCAGTTATGTTGGAGCTGATATAGCGTCTGGGCCTGTGTGGATGGAGTACATCGCTTTTTTAAAGTCGTTACAGGCTGTAAGCACACAGGAAGAGTCGCAACGGATGACTGCTGTGCGGAAAGCATACCAGAGAGCCATTGTTACTCCTACGCATCACATTGAACAACTTTGGAAGGATTATGAAAATTTTGAAAATTCTGTCAGCCGCCATCTGGCAAAAGGACTGTTATCTGAATATCAACCAAAATTTAACAGTGCCAGGGCCGTTTATAGGGAGCGGAAGAAGTACGTTGACGAAATTGACTTGAATATGCTTGCTGTGCCTCCAACTGGCTCTTACAAGGAAGAACTGCAGTGGATGGCGTGGAAAAAGTTGCTGGGTTTTGAAAAAGGGAATCCACAAAGGATAGACAATGGATCATCCAACAAGCGAATTATTTTCACATATGAGCAGTGTCTAATGTATCTATACCATTATCCTGATATATGGTATGACTATGCGATGTGGCATGCAAAAAGTGGATCAATAGATGCTGCAATTAAAGTATTTCAGAGAGCATTGAAGGCTCTTCCTGACTCGGAGATGCTTAGATATGCGTATGCAGAGCTGGAAGAATCCCGTGGAGCGATTCAGCCTACGAAAAAAATATATGAGAACCTTTTGGGAGACGGTGTTAACACAACAGCCCTTGCTCATATACAGTTTATTCGCTTTTTAAGGAGAACTGAAGGAGTTGAAGCAGCTCGCAAGTACTTTTTAGATGCACGCAAATCCCCAAACTGCACATATCATGTTTATGTTGCTTATGCAATGGTGGCCTTATGTCTTGACAAGGATCCCAAGATGGCACACAATGTTTTTGAAGCTGGGCTGAAACAGTTTATGCACGAGCCTGTATACATTCTTGAATATGCAGATTTTTTAACTCGCTTGAATGATGATAGAAATATTCGGGCCCTGTTTGAAAGGGCATTAAGCTCACTACCACCAGAAAAATCTGTTGAGGTATGGAAACAATTTGCCAAATTTGAGCAAACTTTTGGAGATCTGGCTAGCATGTTGAAGGTTGAGCAAAGAAAAAAAGAAGCGCTTTCTACAACTGATGAAGAGGGACCTTCATCTTTGGAAAGTTCTTTACAAGAGGTTGTATCTCGATATAGTTTCATGGATCTTTGGCCCTGCTCTACGAAGGATCTGGACCATTTAGCCCGACAAGAGTGGCTTGCTAAAAATATTAATAAGAAAGTGGAGAAGTCAACTATGCTAAGTGGACCTGACTTTGCAGACAAGGGTTCTACTGGCCTGATAAGCAATTCATCAGTGTCTGCAAAAGTAGTTTATCCAGATACTAATCAAATGGTTATCTATGATCCAAGGCAAAAACCTGGGGTTGGAAATTTTCAGACCACAACAGTAGCTGGAGTTCTTGCTGCTTCTAGCACCTTGTCAAATCCTGTTGTTGCAGCAGTAGGTGGCCAAACAAGTGCCTTTGATGAAATATTAAAAGTAACACCACCTGCTTTGGTGGCCTTCTTAGCAAATTTACCGATCATTGAAGGTCCAACCCCAGATGTGGATGTTGTGCTATCAATTTGTTTGCAAAGTGATATACCAACACCACAGCCTGCAAAGTCAGGGACTGCCCCTATGCAATTTCCGTCAGTACCTGCTCCTTCTACGAGTGACCTTTCTGTTTCAAGCAAGTCTCATCCCATCCCTAGTGGGTCATCTTTCAAGCCAACCAGGGGGAAACGAAAAAATATAGATAGGAAAGACGATGATGAAACTACAGTCCAGAGCCAGCCACTCCCAACAGATGCTTTCAGGATACGGCAGATCCAGAAGGCTAGCCGTTCTGCTTCGGCTAGCCGCACTGCTTCTCAAACAGGATCAGTTTCGTATGGAAGTGCAATTTCTGGAGATTTATCTGGTAGCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

767

Amino Acids

86.04

Weight (kDa)

6.86

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	16 - 519	2.6e-159	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	36 - 181	1.3e-25	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	235 - 361	1.4e-21	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	255 - 327	5.9e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
TPR_14	PF13428	280 - 323	1.9e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1885
Acc36I	ACCTGC	2 cut(s)	1885, 2035
AccBSI	CCGCTC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	1257
AciI	CCGC	5 cut(s)	20, 475, 565, 637, 2230
AcoI	YGGCCR	1 cut(s)	1834
AcsI	RAATTY	6 cut(s)	544, 553, 605, 1385, 1756, 1900
AcuI	CTGAAG	1 cut(s)	1107
AfaI	GTAC	4 cut(s)	407, 647, 1112, 2025
AfeI	AGCGCT	2 cut(s)	93, 1449
AfiI	CCNNNNNNNGG	6 cut(s)	571, 630, 689, 1751, 1933, 2105
AjnI	CCWGG	4 cut(s)	28, 617, 1744, 2102
AluBI	AGCT	8 cut(s)	344, 374, 967, 1103, 1226, 1338, 1778, 2301
AluI	AGCT	8 cut(s)	344, 374, 967, 1103, 1226, 1338, 1778, 2301
Alw26I	GTCTC	3 cut(s)	326, 1020, 2070
AlwNI	CAGNNNCTG	5 cut(s)	139, 1685, 1778, 2000, 2027
Aor51HI	AGCGCT	2 cut(s)	93, 1449
AoxI	GGCC	8 cut(s)	389, 621, 1176, 1314, 1535, 1660, 1834, 1887
ApaI	GGGCCC	1 cut(s)	1318
ApeKI	GCWGC	7 cut(s)	94, 116, 158, 893, 1100, 1790, 1823
ApoI	RAATTY	6 cut(s)	544, 553, 605, 1385, 1756, 1900
AseI	ATTAAT	1 cut(s)	1596
AspLEI	GCGC	2 cut(s)	94, 1450
AspS9I	GGNCC	9 cut(s)	389, 621, 1314, 1315, 1472, 1536, 1558, 1631, 1919
AsuNHI	GCTAGC	3 cut(s)	1412, 2207, 2225
AvaII	GGWCC	4 cut(s)	1472, 1558, 1631, 1919
BaeGI	GKGCMC	1 cut(s)	1318
BalI	TGGCCA	1 cut(s)	1836
BamHI	GGATCC	1 cut(s)	1195
BanII	GRGCYC	1 cut(s)	1318
BauI	CACGAG	1 cut(s)	1247
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	7 cut(s)	81, 128, 170, 880, 1112, 1777, 1835
BccI	CCATC	5 cut(s)	394, 576, 712, 1198, 2081
BceAI	ACGGC	3 cut(s)	608, 2196, 2207
BciT130I	CCWGG	4 cut(s)	30, 619, 1746, 2104
BciVI	GTATCC	1 cut(s)	2181
BcoDI	GTCTC	3 cut(s)	326, 1020, 2070
BfaI	CTAG	6 cut(s)	336, 1413, 1797, 2079, 2208, 2226
BfmI	CTRYAG	3 cut(s)	156, 710, 2148
BfoI	RGCGCY	2 cut(s)	95, 1451
BfuAI	ACCTGC	2 cut(s)	1885, 2035
BfuI	GTATCC	1 cut(s)	2181
BglII	AGATCT	1 cut(s)	1405
BisI	GCNGC	9 cut(s)	95, 117, 159, 565, 894, 1101, 1791, 1824, 2230
BlsI	GCNGC	9 cut(s)	96, 118, 160, 566, 895, 1102, 1792, 1825, 2231
BmcAI	AGTACT	1 cut(s)	1112
Bme1390I	CCNGG	4 cut(s)	30, 619, 1746, 2104
Bme18I	GGWCC	4 cut(s)	1472, 1558, 1631, 1919
BmgT120I	GGNCC	9 cut(s)	389, 621, 1314, 1315, 1472, 1536, 1558, 1631, 1919
BmiI	GGNNCC	3 cut(s)	1197, 1316, 1473
BmrFI	CCNGG	4 cut(s)	30, 619, 1746, 2104
BmsI	GCATC	7 cut(s)	202, 263, 520, 880, 933, 1111, 2167
BmtI	GCTAGC	3 cut(s)	1416, 2211, 2229
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	1800, 2298
BsaBI	GATNNNNATC	1 cut(s)	1710
BsaJI	CCNNGG	6 cut(s)	42, 618, 979, 1733, 1745, 2103
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bsc4I	CCNNNNNNNGG	6 cut(s)	571, 630, 689, 1751, 1933, 2105
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	694, 1663
Bse3DI	GCAATG	1 cut(s)	1176
Bse8I	GATNNNNATC	1 cut(s)	1710
BseBI	CCWGG	4 cut(s)	30, 619, 1746, 2104
BseDI	CCNNGG	6 cut(s)	42, 618, 979, 1733, 1745, 2103
BseGI	GGATG	8 cut(s)	28, 405, 468, 723, 779, 1942, 2068, 2073
BseJI	GATNNNNATC	1 cut(s)	1710
BseLI	CCNNNNNNNGG	6 cut(s)	571, 630, 689, 1751, 1933, 2105
BseMI	GCAATG	1 cut(s)	1176
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	2 cut(s)	694, 1663
BseSI	GKGCMC	1 cut(s)	1318
BseXI	GCAGC	7 cut(s)	81, 128, 170, 880, 1112, 1777, 1835
BseYI	CCCAGC	2 cut(s)	736, 1226
BsgI	GTGCAG	1 cut(s)	1126
BshFI	GGCC	8 cut(s)	391, 623, 1178, 1316, 1537, 1662, 1836, 1889
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	1485, 2011
BslI	CCNNNNNNNGG	6 cut(s)	571, 630, 689, 1751, 1933, 2105
BsmAI	GTCTC	3 cut(s)	326, 1020, 2070
BsmBI	CGTCTC	1 cut(s)	1020
BsmFI	GGGAC	2 cut(s)	1485, 2011
BsnI	GGCC	8 cut(s)	391, 623, 1178, 1316, 1537, 1662, 1836, 1889
Bsp120I	GGGCCC	1 cut(s)	1314
Bsp1286I	GDGCHC	1 cut(s)	1318
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	5 cut(s)	20, 475, 565, 637, 2230
BspANI	GGCC	8 cut(s)	391, 623, 1178, 1316, 1537, 1662, 1836, 1889
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	1197, 1316, 1473
BspMAI	CTGCAG	2 cut(s)	160, 714
BspMI	ACCTGC	2 cut(s)	1885, 2035
BspOI	GCTAGC	3 cut(s)	1416, 2211, 2229
BspQI	GCTCTTC	1 cut(s)	933
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	1176
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	694, 1663
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	6 cut(s)	42, 618, 979, 1733, 1745, 2103
BssNAI	GTATAC	1 cut(s)	1258
BssSI	CACGAG	1 cut(s)	1247
BssT1I	CCWWGG	2 cut(s)	42, 1733
Bst1107I	GTATAC	1 cut(s)	1258
Bst2BI	CACGAG	1 cut(s)	1247
Bst2UI	CCWGG	4 cut(s)	30, 619, 1746, 2104
Bst4CI	ACNGT	8 cut(s)	145, 585, 614, 1031, 1062, 1239, 1774, 2152
Bst6I	CTCTTC	4 cut(s)	324, 444, 933, 1461
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	4 cut(s)	359, 947, 1625, 1894
BstDSI	CCRYGG	2 cut(s)	42, 979
BstF5I	GGATG	8 cut(s)	28, 405, 468, 723, 779, 1942, 2068, 2073
BstH2I	RGCGCY	2 cut(s)	95, 1451
BstHHI	GCGC	2 cut(s)	94, 1450
BstMAI	GTCTC	3 cut(s)	326, 1020, 2070
BstNI	CCWGG	4 cut(s)	30, 619, 1746, 2104
BstNSI	RCATGY	2 cut(s)	872, 1420
BstSCI	CCNGG	4 cut(s)	28, 617, 1744, 2102
BstSFI	CTRYAG	3 cut(s)	156, 710, 2148
BstSLI	GKGCMC	1 cut(s)	1318
BstV1I	GCAGC	7 cut(s)	81, 128, 170, 880, 1112, 1777, 1835
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	5 cut(s)	1195, 1405, 1528, 1552, 2196
BstYI	RGATCY	5 cut(s)	1195, 1405, 1528, 1552, 2196
BstZ17I	GTATAC	1 cut(s)	1258
BsuI	GTATCC	1 cut(s)	2181
BsuRI	GGCC	8 cut(s)	391, 623, 1178, 1316, 1537, 1662, 1836, 1889
BtgI	CCRYGG	2 cut(s)	42, 979
BtgZI	GCGATG	3 cut(s)	286, 394, 875
BtsCI	GGATG	8 cut(s)	28, 405, 468, 723, 779, 1942, 2068, 2073
BtsI	GCAGTG	4 cut(s)	153, 719, 818, 2232
BtsIMutI	CAGTG	7 cut(s)	69, 153, 619, 719, 818, 1686, 2232
BveI	ACCTGC	2 cut(s)	1885, 2035
CaiI	CAGNNNCTG	5 cut(s)	139, 1685, 1778, 2000, 2027
CfoI	GCGC	2 cut(s)	94, 1450
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	9 cut(s)	389, 621, 1314, 1315, 1472, 1536, 1558, 1631, 1919
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	4 cut(s)	406, 646, 1111, 2024
CspCI	CAANNNNNGTGG	2 cut(s)	1863, 1898
CviAII	CATG	5 cut(s)	43, 869, 1151, 1417, 1525
CviQI	GTAC	4 cut(s)	406, 646, 1111, 2024
DdeI	CTNAG	4 cut(s)	359, 947, 1625, 1894
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	1834
Eam1104I	CTCTTC	4 cut(s)	324, 444, 933, 1461
EarI	CTCTTC	4 cut(s)	324, 444, 933, 1461
Eco130I	CCWWGG	2 cut(s)	42, 1733
Eco24I	GRGCYC	1 cut(s)	1318
Eco47I	GGWCC	4 cut(s)	1472, 1558, 1631, 1919
Eco47III	AGCGCT	2 cut(s)	93, 1449
Eco57I	CTGAAG	1 cut(s)	1107
EcoO109I	RGGNCCY	2 cut(s)	1315, 1472
EcoRII	CCWGG	4 cut(s)	28, 617, 1744, 2102
EcoT14I	CCWWGG	2 cut(s)	42, 1733
EcoT38I	GRGCYC	1 cut(s)	1318
ErhI	CCWWGG	2 cut(s)	42, 1733
Esp3I	CGTCTC	1 cut(s)	1020
FaeI	CATG	5 cut(s)	46, 872, 1154, 1420, 1528
FalI	AAGNNNNNCTT	4 cut(s)	1434, 1466, 1566, 1598
FaqI	GGGAC	2 cut(s)	1485, 2011
FatI	CATG	5 cut(s)	42, 868, 1150, 1416, 1524
FauNDI	CATATG	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	1257
Fnu4HI	GCNGC	9 cut(s)	95, 117, 159, 565, 894, 1101, 1791, 1824, 2230
FokI	GGATG	8 cut(s)	35, 412, 475, 730, 766, 1949, 2055, 2060
FriOI	GRGCYC	1 cut(s)	1318
Fsp4HI	GCNGC	9 cut(s)	95, 117, 159, 565, 894, 1101, 1791, 1824, 2230
FspBI	CTAG	6 cut(s)	336, 1413, 1797, 2079, 2208, 2226
GlaI	GCGC	2 cut(s)	93, 1449
GluI	GCNGC	9 cut(s)	95, 117, 159, 565, 894, 1101, 1791, 1824, 2230
GsaI	CCCAGC	2 cut(s)	740, 1230
GsuI	CTGGAG	2 cut(s)	1800, 2298
HaeII	RGCGCY	2 cut(s)	95, 1451
HaeIII	GGCC	8 cut(s)	391, 623, 1178, 1316, 1537, 1662, 1836, 1889
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	2 cut(s)	94, 1450
Hin1II	CATG	5 cut(s)	46, 872, 1154, 1420, 1528
Hin6I	GCGC	2 cut(s)	92, 1448
HinP1I	GCGC	2 cut(s)	92, 1448
HincII	GTYRAC	3 cut(s)	652, 1036, 1617
HindII	GTYRAC	3 cut(s)	652, 1036, 1617
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	6 cut(s)	136, 452, 754, 935, 974, 988
HpaI	GTTAAC	1 cut(s)	1036
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	5 cut(s)	652, 1036, 1258, 1617, 1631
Hpy188I	TCNGA	6 cut(s)	141, 293, 592, 912, 940, 1764
Hpy8I	GTNNAC	5 cut(s)	652, 1036, 1258, 1617, 1631
HpyCH4III	ACNGT	8 cut(s)	145, 585, 614, 1031, 1062, 1239, 1774, 2152
HpyCH4IV	ACGT	1 cut(s)	648
HpyF3I	CTNAG	4 cut(s)	359, 947, 1625, 1894
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	46, 872, 1154, 1420, 1528
HspAI	GCGC	2 cut(s)	92, 1448
KspAI	GTTAAC	1 cut(s)	1036
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	4 cut(s)	371, 634, 983, 2035
Lsp1109I	GCAGC	7 cut(s)	81, 128, 170, 880, 1112, 1777, 1835
LweI	GCATC	7 cut(s)	202, 263, 520, 880, 933, 1111, 2167
MaeI	CTAG	6 cut(s)	336, 1413, 1797, 2079, 2208, 2226
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	4 cut(s)	426, 499, 1867, 2042
MbiI	CCGCTC	1 cut(s)	637
MboII	GAAGA	8 cut(s)	245, 341, 461, 652, 716, 920, 983, 1478
MflI	RGATCY	5 cut(s)	1195, 1405, 1528, 1552, 2196
MhlI	GDGCHC	1 cut(s)	1318
MlsI	TGGCCA	1 cut(s)	1836
MluNI	TGGCCA	1 cut(s)	1836
MlyI	GAGTC	2 cut(s)	461, 929
MmeI	TCCRAC	5 cut(s)	349, 710, 807, 1732, 1946
MnlI	CCTC	8 cut(s)	40, 106, 178, 313, 693, 1357, 1462, 1495
Mox20I	TGGCCA	1 cut(s)	1836
MscI	TGGCCA	1 cut(s)	1836
MseI	TTAA	9 cut(s)	419, 609, 900, 1035, 1076, 1283, 1334, 1596, 1862
MslI	CAYNNNNRTG	1 cut(s)	1155
Msp20I	TGGCCA	1 cut(s)	1836
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	4 cut(s)	30, 619, 1746, 2104
MvaI	CCWGG	4 cut(s)	30, 619, 1746, 2104
NcoI	CCATGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	805
NheI	GCTAGC	3 cut(s)	1412, 2207, 2225
NlaIII	CATG	5 cut(s)	46, 872, 1154, 1420, 1528
NlaIV	GGNNCC	3 cut(s)	1197, 1316, 1473
NmuCI	GTSAC	1 cut(s)	2042
NspI	RCATGY	2 cut(s)	872, 1420
PaeI	GCATGC	1 cut(s)	872
PaqCI	CACCTGC	1 cut(s)	1885
PciSI	GCTCTTC	1 cut(s)	933
PfeI	GAWTC	4 cut(s)	136, 754, 974, 988
PkrI	GCNGC	9 cut(s)	96, 118, 160, 566, 895, 1102, 1792, 1825, 2231
PleI	GAGTC	2 cut(s)	460, 929
PpsI	GAGTC	2 cut(s)	460, 929
PpuMI	RGGWCCY	1 cut(s)	1472
PshBI	ATTAAT	1 cut(s)	1596
Psp5II	RGGWCCY	1 cut(s)	1472
Psp6I	CCWGG	4 cut(s)	28, 617, 1744, 2102
PspFI	CCCAGC	2 cut(s)	736, 1226
PspGI	CCWGG	4 cut(s)	28, 617, 1744, 2102
PspN4I	GGNNCC	3 cut(s)	1197, 1316, 1473
PspOMI	GGGCCC	1 cut(s)	1314
PspPI	GGNCC	9 cut(s)	389, 621, 1314, 1315, 1472, 1536, 1558, 1631, 1919
PspPPI	RGGWCCY	1 cut(s)	1472
PsrI	GAACNNNNNNTAC	2 cut(s)	1767, 1799
PstI	CTGCAG	2 cut(s)	160, 714
PstNI	CAGNNNCTG	5 cut(s)	139, 1685, 1778, 2000, 2027
PsuI	RGATCY	5 cut(s)	1195, 1405, 1528, 1552, 2196
RsaI	GTAC	4 cut(s)	407, 647, 1112, 2025
RsaNI	GTAC	4 cut(s)	406, 646, 1111, 2024
RseI	CAYNNNNRTG	1 cut(s)	1155
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	9 cut(s)	419, 609, 900, 1035, 1076, 1283, 1334, 1596, 1862
SatI	GCNGC	9 cut(s)	95, 117, 159, 565, 894, 1101, 1791, 1824, 2230
Sau96I	GGNCC	9 cut(s)	389, 621, 1314, 1315, 1472, 1536, 1558, 1631, 1919
ScaI	AGTACT	1 cut(s)	1112
SchI	GAGTC	2 cut(s)	461, 929
ScrFI	CCNGG	4 cut(s)	30, 619, 1746, 2104
SduI	GDGCHC	1 cut(s)	1318
SfaNI	GCATC	7 cut(s)	202, 263, 520, 880, 933, 1111, 2167
SfcI	CTRYAG	3 cut(s)	156, 710, 2148
SinI	GGWCC	4 cut(s)	1472, 1558, 1631, 1919
SmiMI	CAYNNNNRTG	1 cut(s)	1155
SphI	GCATGC	1 cut(s)	872
SsiI	CCGC	5 cut(s)	20, 475, 565, 637, 2230
SspI	AATATT	4 cut(s)	167, 1309, 1594, 1860
SspMI	CTAG	6 cut(s)	336, 1413, 1797, 2079, 2208, 2226
StyD4I	CCNGG	4 cut(s)	28, 617, 1744, 2102
StyI	CCWWGG	2 cut(s)	42, 1733
TaaI	ACNGT	8 cut(s)	145, 585, 614, 1031, 1062, 1239, 1774, 2152
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	2 cut(s)	9, 1513
TatI	WGTACW	2 cut(s)	405, 1110
TauI	GCSGC	2 cut(s)	567, 2232
TfiI	GAWTC	4 cut(s)	136, 754, 974, 988
Tru1I	TTAA	9 cut(s)	419, 609, 900, 1035, 1076, 1283, 1334, 1596, 1862
Tru9I	TTAA	9 cut(s)	419, 609, 900, 1035, 1076, 1283, 1334, 1596, 1862
TscAI	CASTG	7 cut(s)	76, 160, 619, 719, 818, 1686, 2239
TseFI	GTSAC	1 cut(s)	2042
TseI	GCWGC	7 cut(s)	94, 116, 158, 893, 1100, 1790, 1823
Tsp45I	GTSAC	1 cut(s)	2042
TspDTI	ATGAA	8 cut(s)	277, 555, 1467, 1479, 1513, 1665, 1869, 2157
TspGWI	ACGGA	2 cut(s)	475, 2007
TspRI	CASTG	7 cut(s)	76, 160, 619, 719, 818, 1686, 2239
VpaK11BI	GGWCC	4 cut(s)	1472, 1558, 1631, 1919
VspI	ATTAAT	1 cut(s)	1596
XapI	RAATTY	6 cut(s)	544, 553, 605, 1385, 1756, 1900
XceI	RCATGY	2 cut(s)	872, 1420
XmiI	GTMKAC	1 cut(s)	1257
XspI	CTAG	6 cut(s)	336, 1413, 1797, 2079, 2208, 2226
ZrmI	AGTACT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.