Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009440.1

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6907

Gene Structure 6907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009440.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

gcaaaatattggaagcaatatgtggaggcacagattgctgtaaataatgatgatgctacaaaacagatatttagccggtgtttgttgatttgtcttcaagttccactctggcggtgctacattcgtttcatcagaaaggttaatgacaagaagggggtggagggtcaagaagagactagaaaagcttttgattttatgctcagttatgttggagctgatatagcgtctgggcctgtgtggatggagtacatcgcttttttaaagtcgttacaggctgtaagcacacaggaagagtcgcaacggatgactgctgtgcggaaagcataccagagagccattgttactcctacgcatcacattgaacaactttggaaggattatgaaaattttgaaaattctgtcagccgccatctggcaaaaggactgttatctgaatatcaaccaaagtttaacagtgccagggccgtttatagggagcggaagaagtacgttgacgaaattgacttgaatatgcttgctgtgccaccaactggctcttacaaggaagaactgcagtggatggcgtggaaaaagttgctgggttttgaaaaagggaatccacaaaggatagacaatggatcatccaacaagcgaattattttcacatatgagcaggtggatgaatatgtatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

224

Amino Acids

26.36

Weight (kDa)

8.94

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccBSI	CCGCTC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	4 cut(s)	112, 316, 406, 478
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	385, 394
AfaI	GTAC	2 cut(s)	248, 488
AfiI	CCNNNNNNNGG	3 cut(s)	412, 471, 530
AgsI	TTSAA	5 cut(s)	98, 362, 392, 508, 587
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	2 cut(s)	185, 215
AluI	AGCT	2 cut(s)	185, 215
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	2 cut(s)	230, 462
ApoI	RAATTY	2 cut(s)	385, 394
AspS9I	GGNCC	2 cut(s)	230, 462
BbsI	GAAGAC	1 cut(s)	86
BccI	CCATC	3 cut(s)	235, 417, 553
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	230, 462
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	43, 361
BpiI	GAAGAC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 471, 530
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	5 cut(s)	246, 309, 564, 620, 664
BseLI	CCNNNNNNNGG	3 cut(s)	412, 471, 530
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	577
BshFI	GGCC	2 cut(s)	232, 464
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	3 cut(s)	412, 471, 530
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	232, 464
Bsp143I	GATC	1 cut(s)	617
BspACI	CCGC	4 cut(s)	112, 316, 406, 478
BspANI	GGCC	2 cut(s)	232, 464
BspCNI	CTCAG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	1 cut(s)	617
BssNAI	GTATAC	1 cut(s)	670
Bst1107I	GTATAC	1 cut(s)	670
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	2 cut(s)	426, 455
Bst6I	CTCTTC	2 cut(s)	165, 285
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	5 cut(s)	246, 309, 564, 620, 664
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 221, 520
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	670
BsuRI	GGCC	2 cut(s)	232, 464
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	5 cut(s)	246, 309, 564, 620, 664
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	460, 560
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	230, 462
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	247, 487
CviJI	RGCY	9 cut(s)	75, 185, 215, 232, 275, 335, 405, 464, 534
CviKI_1	RGCY	9 cut(s)	75, 185, 215, 232, 275, 335, 405, 464, 534
CviQI	GTAC	2 cut(s)	247, 487
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
DraI	TTTAAA	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	165, 285
EarI	CTCTTC	2 cut(s)	165, 285
EcoRII	CCWGG	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	5 cut(s)	253, 316, 571, 607, 671
Fsp4HI	GCNGC	1 cut(s)	406
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	406
GsaI	CCCAGC	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	232, 464
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	2 cut(s)	293, 595
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	493, 670
Hpy188I	TCNGA	2 cut(s)	134, 433
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	493, 670
HpyAV	CCTTC	2 cut(s)	145, 367
HpyCH4III	ACNGT	2 cut(s)	426, 455
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 221, 520
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	617
LmnI	GCTCC	2 cut(s)	212, 475
LweI	GCATC	2 cut(s)	43, 361
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	267, 340
MalI	GATC	1 cut(s)	619
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	1 cut(s)	617
MboII	GAAGA	5 cut(s)	86, 182, 302, 493, 557
MluCI	AATT	4 cut(s)	385, 394, 498, 633
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	190, 648
MnlI	CCTC	2 cut(s)	19, 154
MseI	TTAA	3 cut(s)	141, 260, 450
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	35, 221, 520
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	643
PfeI	GAWTC	1 cut(s)	595
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	407
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	230, 462
PstI	CTGCAG	1 cut(s)	555
RsaI	GTAC	2 cut(s)	248, 488
RsaNI	GTAC	2 cut(s)	247, 487
SaqAI	TTAA	3 cut(s)	141, 260, 450
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	2 cut(s)	230, 462
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	460
SetI	ASST	5 cut(s)	141, 187, 217, 492, 657
SfaNI	GCATC	2 cut(s)	43, 361
SfcI	CTRYAG	1 cut(s)	551
Sse9I	AATT	4 cut(s)	385, 394, 498, 633
SsiI	CCGC	4 cut(s)	112, 316, 406, 478
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	458
TaaI	ACNGT	2 cut(s)	426, 455
TaiI	ACGT	1 cut(s)	492
TasI	AATT	4 cut(s)	385, 394, 498, 633
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	3 cut(s)	141, 260, 450
Tru9I	TTAA	3 cut(s)	141, 260, 450
TscAI	CASTG	2 cut(s)	460, 560
TspDTI	ATGAA	3 cut(s)	118, 396, 675
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	460, 560
Van91I	CCANNNNNTGG	1 cut(s)	530
XapI	RAATTY	2 cut(s)	385, 394
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.