Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

63793359 .. 63795801

Gene Structure 2443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGATCCCAAATACAATGTCCAGGCGGCTTCCTACCAAGCCAACCAGGCCCGCCGCTTGCCGATCTCGGAGGCGGCGCCGATCTACGAGAATCTCCTGACGGCGTTCCCGACCGCGGCGAAATACTGGACCCAATACGCCGAGGCCCAGATGGCGGCGAACGACGACGAGGCCACCAAAAACATATTCAGCAGGTGTTTGATGAAATGCCGCCACCTCCCTCTTTGGCAGACCTACATCAATTTCATCAGAAGAGTCAACGCCAACAACGGCCAAGAGGGTCAAGATTTGATTAGGAAAGCCTTTGATTTCGTGATTAGTTGTGTTGGGGATGATATCACTTCTGGGCCTGTGTGGTTGGACTACATTAGTTTCTTGAAGTCTAGCAACCAGATTGTTTCGCTGCGAAAAGCTTACCAGAAGGCCTTTTTGACTCCTAATCATCACATGGACCAGCTTTGGAGTGAGTATCAGAGTTTCGAAAACACCTACAACAAGGACCTTGCGAAAAGCCTGTTGGCTGAGTTTTCGCACAAGTTCAAAGGCGCCAAGGCGGCTTATTGGGAGAGGAGGAATGTGGTTAAGGACATCGACTTTGGCATGCTTGCTGTGCCGCCCACTGGCTCTCCCAGGGAAGAAGGGCAGTGGATGGCGTGGAAGAAGCTGTTGGCTTTTGACAAAGAAAACCGACAGAGGATAGACATTGCATCGTGCAACAAGCGAATTGAATTGGCATATGAGCAGTGTCTGATGTATCTGTGCCATTACCCTGATATGTGGTATGATTACGCAATGTGGCTTGTGAAAAGTGGTTCCATGGATGCTGCAGTCAAAGTGTTTGAGAGAGCTTTGAAGGCTGTTCCTGAGTCCGAGATGCTGAGGTATGCGTATGCGGATCTGGAAGAATCCCGGGGAGAAATCAAGGCTGCAAAGAAGATATACGAGAGCCTTTTGGGAGATGGTGGTACTGGCACATCACCAGGACTTGCTCAAATACAGTTTCTTCGATTCTTAAGGAGGACTGAAGGTATTGAAGCTGCTCGCAGCTACTTTTTAGAAGCTAGAAAATCCCCAAATTGTACTTATAATGTATATGTTGCATATGCGAATATTGCCTTATGTCATGATAAAAATATGAAACTTGCACACAATGTTTTTGAAGCTGGGATGAAACTGTTTATGCATGAGCCTGAGTACATTCTTGAGTATCTAGAACATTTGATTCGTTTGAATGATGATATGAATGCTAGAGCCTTGTTTGAGAGGGCATTATGCTCATTGCCAACAGAGAAATCGGTTGAGATATTGAACCGTTTTGTCAAGTTTGAGCAAACTTATGGAAACTTGACCAGTATGTTGAAGGTTGAGCAAAGAAAAAAAGAAGCACTTTCTAGAATAGGTGGTGAAGAGCAACCTTTATCTTTGGAAAGTTCATTGCAGGATGTTGTATCACGTTATAGTTTCAGGAATCTTTGTCCCTGCTCTATGAAGGATTTGGATCATTTAACCCGACAAGAGTCCCTATCTAGAAATAAGAATAGGAAGGTTGATAGTTCCTCCCCTGTTCCGACTGAAGCTAAACCATCCGTGGTACCGGATTCATCAGTGCCAGTGTCTACAAAAGTAGTTTATCCAGCTACAAATCAAACCACACCTACAACAGCTGTTGTTCCAAACACAGTGCTACAAAGCCAAACACCCGTGGCTGGAAATGTTCAAACCACAATGGCACTAGTAGGTGGAGATCCAAAGTTTGATGACATACTAAAAACTACACCTGCTTTGGTAGCCTTCTTGACAAATATGCCGCAGCAAGTTGGCGGTCCAACCCCAGATGTGGATGTTGTGTTATCATTTGTTTTGCAGAGTGATATACCAAGCAACTCAACCAGCAGAAAAAGGAAAGCCAATGAATGGGAGGTTGTTAAGGAGGTCAAGCACCAGCCGATATTCCCAGTAGATGTTTTCAAGATGCGGCAGTTGCAGAAGTATCACCCTACCGGTTCTCAAACAGGATCAGCCTCCTGCGGGAGTTCTAGTTGTAGTTCTGGAGATTACACTGTAGTTACTCGCAACACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

694

Amino Acids

78.5

Weight (kDa)

8.36

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	19 - 499	8.2e-137	Suppressor of forked protein (Suf)
HAT_PRP39_N	PF23240	22 - 158	2.3e-26	PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	28 - 169	1.8e-10	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	210 - 318	2.6e-20	PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	217 - 315	5.3e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
TPR_14	PF13428	257 - 300	1.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1086
AarI	CACCTGC	2 cut(s)	183, 1786
Acc36I	ACCTGC	2 cut(s)	183, 1786
Acc65I	GGTACC	1 cut(s)	1591
AccB1I	GGYRCC	3 cut(s)	76, 545, 1591
AccB7I	CCANNNNNTGG	1 cut(s)	1914
AccI	GTMKAC	1 cut(s)	1616
AccII	CGCG	1 cut(s)	116
AclWI	GGATC	5 cut(s)	12, 903, 1506, 1739, 2023
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	1044, 1593
AcyI	GRCGYC	2 cut(s)	77, 546
AfaI	GTAC	4 cut(s)	967, 1081, 1196, 1593
AfiI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
AflII	CTTAAG	1 cut(s)	1012
AgeI	ACCGGT	1 cut(s)	2000
AhlI	ACTAGT	1 cut(s)	1732
AjnI	CCWGG	4 cut(s)	21, 45, 629, 979
AjuI	GAANNNNNNNTTGG	6 cut(s)	170, 202, 500, 532, 650, 682
AlwI	GGATC	5 cut(s)	12, 903, 1506, 1739, 2023
AlwNI	CAGNNNCTG	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	6 cut(s)	48, 144, 171, 271, 347, 423
ApeKI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1810
ArsI	GACNNNNNNTTYG	3 cut(s)	35, 578, 610
AsiGI	ACCGGT	1 cut(s)	2000
Asp718I	GGTACC	1 cut(s)	1591
AspLEI	GCGC	2 cut(s)	79, 548
AspS9I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
AsuC2I	CCSGG	2 cut(s)	910, 911
AsuHPI	GGTGA	3 cut(s)	969, 1415, 1985
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	4 cut(s)	129, 451, 499, 1823
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	76, 545, 1591
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BccI	CCATC	4 cut(s)	145, 643, 953, 1591
BceAI	ACGGC	2 cut(s)	117, 286
BciT130I	CCWGG	4 cut(s)	23, 47, 631, 981
BcnI	CCSGG	2 cut(s)	910, 911
BcuI	ACTAGT	1 cut(s)	1732
BfaI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
BfmI	CTRYAG	2 cut(s)	825, 2061
BfoI	RGCGCY	2 cut(s)	80, 549
BfrI	CTTAAG	1 cut(s)	1012
BfuAI	ACCTGC	2 cut(s)	183, 1786
BglI	GCCNNNNNGGC	3 cut(s)	47, 152, 554
Bme1390I	CCNGG	6 cut(s)	23, 47, 631, 910, 911, 981
Bme18I	GGWCC	4 cut(s)	129, 451, 499, 1823
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
BmiI	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
BmrFI	CCNGG	6 cut(s)	23, 47, 631, 910, 911, 981
BmrI	ACTGGG	1 cut(s)	1949
BmsI	GCATC	4 cut(s)	716, 811, 864, 1962
BmuI	ACTGGG	1 cut(s)	1949
BoxI	GACNNNNGTC	1 cut(s)	1516
BpmI	CTGGAG	1 cut(s)	2070
Bpu10I	CCTNAGC	1 cut(s)	878
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	1223
BpuMI	CCSGG	2 cut(s)	910, 911
BsaBI	GATNNNNATC	1 cut(s)	1497
BsaHI	GRCGYC	2 cut(s)	77, 546
BsaWI	WCCGGW	2 cut(s)	1594, 2000
BsaXI	ACNNNNNCTCC	4 cut(s)	610, 640, 2023, 2053
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
Bse118I	RCCGGY	1 cut(s)	2000
Bse1I	ACTGG	6 cut(s)	131, 625, 973, 1350, 1610, 1955
Bse3DI	GCAATG	4 cut(s)	702, 798, 1277, 1433
Bse8I	GATNNNNATC	1 cut(s)	1497
BseBI	CCWGG	4 cut(s)	23, 47, 631, 981
BseGI	GGATG	7 cut(s)	337, 654, 826, 1173, 1447, 1583, 1846
BseJI	GATNNNNATC	1 cut(s)	1497
BseLI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
BseMI	GCAATG	4 cut(s)	702, 798, 1277, 1433
BseMII	CTCAG	4 cut(s)	513, 855, 869, 1182
BseNI	ACTGG	6 cut(s)	131, 625, 973, 1350, 1610, 1955
BseRI	GAGGAG	1 cut(s)	583
BseXI	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BseYI	CCCAGC	1 cut(s)	1163
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BshNI	GGYRCC	3 cut(s)	76, 545, 1591
BshTI	ACCGGT	1 cut(s)	2000
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	3 cut(s)	910, 1595, 2001
BslFI	GGGAC	2 cut(s)	1461, 1504
BslI	CCNNNNNNNGG	7 cut(s)	115, 154, 620, 1706, 1837, 1914, 2028
BsmFI	GGGAC	2 cut(s)	1461, 1504
BsmI	GAATGC	1 cut(s)	1249
BsnI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BsoBI	CYCGRG	1 cut(s)	909
Bsp119I	TTCGAA	1 cut(s)	480
Bsp143I	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
Bsp19I	CCATGG	1 cut(s)	816
BspANI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BspCNI	CTCAG	4 cut(s)	514, 856, 870, 1183
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	1123
BspLI	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	2 cut(s)	183, 1786
BspPI	GGATC	5 cut(s)	12, 903, 1506, 1739, 2023
BspQI	GCTCTTC	1 cut(s)	1401
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	3 cut(s)	76, 545, 1591
BspTI	CTTAAG	1 cut(s)	1012
BsrDI	GCAATG	4 cut(s)	702, 798, 1277, 1433
BsrFI	RCCGGY	1 cut(s)	2000
BsrI	ACTGG	6 cut(s)	131, 625, 973, 1350, 1610, 1955
BssAI	RCCGGY	1 cut(s)	2000
BssMI	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
BssNI	GRCGYC	2 cut(s)	77, 546
BssT1I	CCWWGG	2 cut(s)	549, 816
Bst2UI	CCWGG	4 cut(s)	23, 47, 631, 981
Bst4CI	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
Bst6I	CTCTTC	2 cut(s)	247, 1401
BstACI	GRCGYC	2 cut(s)	77, 546
BstAFI	CTTAAG	1 cut(s)	1012
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	5 cut(s)	52, 59, 602, 606, 1042
BstDEI	CTNAG	4 cut(s)	522, 864, 878, 1191
BstDSI	CCRYGG	4 cut(s)	114, 816, 1587, 1701
BstF5I	GGATG	7 cut(s)	337, 654, 826, 1173, 1447, 1583, 1846
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	2 cut(s)	80, 549
BstHHI	GCGC	2 cut(s)	79, 548
BstKTI	GATC	7 cut(s)	7, 66, 84, 898, 1501, 1747, 2018
BstMBI	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
BstNI	CCWGG	4 cut(s)	23, 47, 631, 981
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	1516
BstSCI	CCNGG	6 cut(s)	21, 45, 629, 908, 909, 979
BstSFI	CTRYAG	2 cut(s)	825, 2061
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
BstX2I	RGATCY	3 cut(s)	4, 895, 1744
BstYI	RGATCY	3 cut(s)	4, 895, 1744
BsuRI	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
BtgI	CCRYGG	4 cut(s)	114, 816, 1587, 1701
BtsCI	GGATG	7 cut(s)	337, 654, 826, 1173, 1447, 1583, 1846
BtsI	GCAGTG	2 cut(s)	650, 749
BtsIMutI	CAGTG	7 cut(s)	618, 650, 749, 1611, 1617, 1686, 2058
BveI	ACCTGC	2 cut(s)	183, 1786
Cac8I	GCNNGC	5 cut(s)	52, 59, 602, 606, 1042
CaiI	CAGNNNCTG	1 cut(s)	748
CciI	TCATGA	1 cut(s)	1123
CfoI	GCGC	2 cut(s)	79, 548
Cfr10I	RCCGGY	1 cut(s)	2000
Cfr13I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
Cfr42I	CCGCGG	1 cut(s)	117
Cfr9I	CCCGGG	1 cut(s)	909
Csp6I	GTAC	4 cut(s)	966, 1080, 1195, 1592
CspAI	ACCGGT	1 cut(s)	2000
CviAII	CATG	5 cut(s)	448, 601, 817, 1124, 1184
CviQI	GTAC	4 cut(s)	966, 1080, 1195, 1592
DdeI	CTNAG	4 cut(s)	522, 864, 878, 1191
DinI	GGCGCC	2 cut(s)	78, 547
DpnI	GATC	7 cut(s)	6, 65, 83, 897, 1500, 1746, 2017
DpnII	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	247, 1401
EarI	CTCTTC	2 cut(s)	247, 1401
Eco130I	CCWWGG	2 cut(s)	549, 816
Eco147I	AGGCCT	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	4 cut(s)	129, 451, 499, 1823
Eco57I	CTGAAG	2 cut(s)	1044, 1593
Eco88I	CYCGRG	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	4 cut(s)	21, 45, 629, 979
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	549, 816
EcoT22I	ATGCAT	1 cut(s)	1185
EgeI	GGCGCC	2 cut(s)	78, 547
EheI	GGCGCC	2 cut(s)	78, 547
ErhI	CCWWGG	2 cut(s)	549, 816
FaeI	CATG	5 cut(s)	451, 604, 820, 1127, 1187
FalI	AAGNNNNNCTT	2 cut(s)	1371, 1403
FaqI	GGGAC	2 cut(s)	1461, 1504
FatI	CATG	5 cut(s)	447, 600, 816, 1123, 1183
FauI	CCCGC	2 cut(s)	59, 2021
FauNDI	CATATG	2 cut(s)	736, 1102
FblI	GTMKAC	1 cut(s)	1616
FokI	GGATG	7 cut(s)	344, 661, 833, 1180, 1454, 1570, 1853
FspBI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
GlaI	GCGC	2 cut(s)	78, 547
GsaI	CCCAGC	1 cut(s)	1167
GsuI	CTGGAG	1 cut(s)	2070
HaeII	RGCGCY	2 cut(s)	80, 549
HaeIII	GGCC	6 cut(s)	50, 146, 173, 273, 349, 425
HapII	CCGG	3 cut(s)	910, 1595, 2001
HhaI	GCGC	2 cut(s)	79, 548
Hin1I	GRCGYC	2 cut(s)	77, 546
Hin1II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
Hin6I	GCGC	2 cut(s)	77, 546
HinP1I	GCGC	2 cut(s)	77, 546
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	3 cut(s)	910, 1595, 2001
HphI	GGTGA	3 cut(s)	969, 1415, 1985
Hpy166II	GTNNAC	2 cut(s)	259, 1617
Hpy188I	TCNGA	6 cut(s)	70, 251, 474, 750, 871, 1569
Hpy8I	GTNNAC	2 cut(s)	259, 1617
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	8 cut(s)	415, 632, 847, 1019, 1354, 1483, 1537, 1801
HpyCH4III	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
HpyCH4IV	ACGT	1 cut(s)	1453
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
HpyF3I	CTNAG	4 cut(s)	522, 864, 878, 1191
HpySE526I	ACGT	1 cut(s)	1453
Hsp92I	GRCGYC	2 cut(s)	77, 546
Hsp92II	CATG	5 cut(s)	451, 604, 820, 1127, 1187
HspAI	GCGC	2 cut(s)	77, 546
KasI	GGCGCC	2 cut(s)	76, 545
KpnI	GGTACC	1 cut(s)	1595
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
LguI	GCTCTTC	1 cut(s)	1401
Lsp1109I	GCAGC	6 cut(s)	390, 811, 913, 1024, 1056, 1822
LweI	GCATC	4 cut(s)	716, 811, 864, 1962
MaeI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
MaeII	ACGT	1 cut(s)	1453
MaeIII	GTNAC	1 cut(s)	2065
MalI	GATC	7 cut(s)	6, 65, 83, 897, 1500, 1746, 2017
MboI	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
MboII	GAAGA	7 cut(s)	264, 647, 670, 914, 946, 995, 1418
MflI	RGATCY	3 cut(s)	4, 895, 1744
MluCI	AATT	4 cut(s)	241, 723, 728, 1075
Mly113I	GGCGCC	2 cut(s)	77, 546
MlyI	GAGTC	4 cut(s)	264, 427, 875, 1526
MmeI	TCCRAC	3 cut(s)	339, 1592, 1850
Mph1103I	ATGCAT	1 cut(s)	1185
MseI	TTAA	4 cut(s)	582, 1013, 1505, 1926
MspA1I	CMGCKG	2 cut(s)	116, 1664
MspCI	CTTAAG	1 cut(s)	1012
MspI	CCGG	3 cut(s)	910, 1595, 2001
MspR9I	CCNGG	6 cut(s)	23, 47, 631, 910, 911, 981
Mva1269I	GAATGC	1 cut(s)	1249
MvaI	CCWGG	4 cut(s)	23, 47, 631, 981
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	8 cut(s)	47, 152, 554, 610, 854, 1112, 1787, 1981
NarI	GGCGCC	2 cut(s)	77, 546
NciI	CCSGG	2 cut(s)	910, 911
NcoI	CCATGG	1 cut(s)	816
NdeI	CATATG	2 cut(s)	736, 1102
NdeII	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
NlaIII	CATG	5 cut(s)	451, 604, 820, 1127, 1187
NlaIV	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
NmeAIII	GCCGAG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	1185
NspI	RCATGY	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	480
PaeI	GCATGC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	1123
PaqCI	CACCTGC	2 cut(s)	183, 1786
PasI	CCCWGGG	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	1401
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1249
PfeI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1468, 1598
PflMI	CCANNNNNTGG	1 cut(s)	1914
PinAI	ACCGGT	1 cut(s)	2000
PleI	GAGTC	4 cut(s)	263, 427, 874, 1525
PluTI	GGCGCC	2 cut(s)	80, 549
PpsI	GAGTC	4 cut(s)	263, 427, 874, 1525
PpuMI	RGGWCCY	1 cut(s)	499
PshAI	GACNNNNGTC	1 cut(s)	1516
PsiI	TTATAA	1 cut(s)	1086
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	4 cut(s)	21, 45, 629, 979
PspFI	CCCAGC	1 cut(s)	1163
PspGI	CCWGG	4 cut(s)	21, 45, 629, 979
PspN4I	GGNNCC	6 cut(s)	6, 78, 131, 547, 814, 1593
PspPI	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
PspPPI	RGGWCCY	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	3 cut(s)	4, 895, 1744
PvuII	CAGCTG	1 cut(s)	1664
RsaI	GTAC	4 cut(s)	967, 1081, 1196, 1593
RsaNI	GTAC	4 cut(s)	966, 1080, 1195, 1592
SacII	CCGCGG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	1401
SaqAI	TTAA	4 cut(s)	582, 1013, 1505, 1926
Sau3AI	GATC	7 cut(s)	4, 63, 81, 895, 1498, 1744, 2015
Sau96I	GGNCC	7 cut(s)	49, 129, 145, 347, 451, 499, 1823
SchI	GAGTC	4 cut(s)	264, 427, 875, 1526
ScrFI	CCNGG	6 cut(s)	23, 47, 631, 910, 911, 981
SfaNI	GCATC	4 cut(s)	716, 811, 864, 1962
SfcI	CTRYAG	2 cut(s)	825, 2061
SfoI	GGCGCC	2 cut(s)	78, 547
Sfr303I	CCGCGG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	117
SinI	GGWCC	4 cut(s)	129, 451, 499, 1823
SmaI	CCCGGG	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	1012, 1202
SmoI	CTYRAG	2 cut(s)	1012, 1202
SpeI	ACTAGT	1 cut(s)	1732
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	4 cut(s)	241, 723, 728, 1075
SseBI	AGGCCT	1 cut(s)	425
SspDI	GGCGCC	2 cut(s)	76, 545
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	6 cut(s)	21, 45, 629, 908, 909, 979
StyI	CCWWGG	2 cut(s)	549, 816
TaaI	ACNGT	5 cut(s)	999, 1176, 1313, 1681, 2062
TaiI	ACGT	1 cut(s)	1456
TaqI	TCGA	3 cut(s)	480, 591, 1006
TasI	AATT	4 cut(s)	241, 723, 728, 1075
TatI	WGTACW	2 cut(s)	1079, 1194
TfiI	GAWTC	6 cut(s)	91, 905, 1008, 1222, 1468, 1598
Tru1I	TTAA	4 cut(s)	582, 1013, 1505, 1926
Tru9I	TTAA	4 cut(s)	582, 1013, 1505, 1926
TscAI	CASTG	7 cut(s)	625, 650, 749, 1611, 1617, 1686, 2065
TseI	GCWGC	6 cut(s)	403, 824, 926, 1037, 1044, 1810
TspDTI	ATGAA	9 cut(s)	218, 235, 1151, 1184, 1256, 1422, 1502, 1590, 1926
TspGWI	ACGGA	1 cut(s)	1576
TspMI	CCCGGG	1 cut(s)	909
TspRI	CASTG	7 cut(s)	625, 650, 749, 1611, 1617, 1686, 2065
Van91I	CCANNNNNTGG	1 cut(s)	1914
Vha464I	CTTAAG	1 cut(s)	1012
VpaK11BI	GGWCC	4 cut(s)	129, 451, 499, 1823
XbaI	TCTAGA	3 cut(s)	1210, 1391, 1526
XceI	RCATGY	1 cut(s)	604
XmaI	CCCGGG	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	1616
XspI	CTAG	8 cut(s)	384, 1062, 1211, 1248, 1392, 1527, 1733, 2037
Zsp2I	ATGCAT	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.