Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002515

Physical Location & Seq

Genomic Coordinates Forward (+)

14188910 .. 14189536

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGATCACAGTGATATCAGCTCAAGGCCTCAAGAACTCTTCTCACTTTTCCCAGAAGATTAGACCCTTTATCACCCTCACCACTACTCCACCAGCTGCCACAACATGCCGGTCCTCCGGCGACGAGAAGTGCCACGTGTACAAAACGAGGGTGGATGATGAAGGTGGGATCAACCCAACATGGGGTGACAAGTTCTTGGTTCCTCTGGATGCTAGTTTCTTCAGCAACAGGTATTCTTGCATATATCTCCAGCTTTACACTAAGCGGCTCATAATGGGCCGGGCTCAGCTGGGCTGGTGTCAAATCCCGGCCTATGATATTGTCGGGTTCCCGGCGACGGGCTCGGTGCGGTGCCTGAGTTACCGGCTACGGGCTAGGGACGGTACGAGGACTCATGGGGTTGTGAACGTGGCTATCAAGTTGGAGAATTTGGCGCCGGTGAGCAATCAGAGGGTGGTGTCAGTAAACTCTATCTCATCGACATTTGACACGTGTGGCACGGTTATTGGTACCCCGGTGGCACAGCTATCACCTTTGGCGGGTGAGTGCTCCGTTACGTGTCAGGGGCAGATAAGTCACTTTGGTTTTGGTTGTAGAGAGGGAAATAGATGGAGCCATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Suf TPR_14

Protein Analysis

208

Amino Acids

22.75

Weight (kDa)

9.04

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 107	2.8e-08	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17760
fragaria_vesca	FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_5g27050 FvH4_6g34990
malus_domestica	MD09G1000100.v1.1
prunus_persica	Prupe.1G353000_v2.0.a1
pyrus_communis	pycom08g21780
rosa_chinensis	RchiOBHm_Chr2g0146051 RchiOBHm_Chr7g0218051
rosa_laevigata	RLG00000002420 RLG00000020181
rosa_multiflora	Rmu_sc0000379.1_g000001 Rmu_sc0009440.1_g000001 Rmu_sc0009440.1_g000003 Rmu_sc0014682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434850 Rroxscaffold_2G00100320 Rroxscaffold_3G00241460
rosa_rugosa	Rorug07G0173100
rosa_samantha	Rh2AG448900 Rh2BG461300 Rh2CG435900 Rh2DG470500 Rh7AG315500 Rh7BG305800 Rh7CG333000 Rh7DG313800 Rh7DG314300
rosa_wichuraiana	Rw2G036660 Rw7G026650 Rw7G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	3 cut(s)	354, 436, 512
AciI	CCGC	3 cut(s)	268, 352, 542
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	208
AcvI	CACGTG	2 cut(s)	139, 495
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	3 cut(s)	143, 388, 514
AfiI	CCNNNNNNNGG	6 cut(s)	184, 185, 340, 341, 373, 542
AflIII	ACRYGT	4 cut(s)	138, 492, 494, 560
AluBI	AGCT	5 cut(s)	23, 98, 256, 292, 529
AluI	AGCT	5 cut(s)	23, 98, 256, 292, 529
Alw21I	GWGCWC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	3 cut(s)	28, 280, 312
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	430
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	114, 280
AsuC2I	CCSGG	4 cut(s)	284, 311, 335, 518
AsuHPI	GGTGA	6 cut(s)	67, 73, 200, 454, 525, 557
AvaII	GGWCC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanI	GGYRCC	3 cut(s)	354, 436, 512
BanII	GRGCYC	2 cut(s)	289, 347
BbrPI	CACGTG	2 cut(s)	139, 495
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	606
BcnI	CCSGG	4 cut(s)	284, 311, 335, 518
BfaI	CTAG	2 cut(s)	216, 378
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	2 cut(s)	99, 269
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	100, 270
Bme1390I	CCNGG	4 cut(s)	284, 311, 335, 518
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	114, 280
BmiI	GGNNCC	6 cut(s)	204, 332, 356, 438, 514, 617
BmrFI	CCNGG	4 cut(s)	284, 311, 335, 518
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	9, 17
BpuMI	CCSGG	4 cut(s)	284, 311, 335, 518
BsaAI	YACGTR	3 cut(s)	139, 495, 561
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	6 cut(s)	184, 185, 340, 341, 373, 542
Bse118I	RCCGGY	3 cut(s)	111, 366, 439
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	163, 217
BseLI	CCNNNNNNNGG	6 cut(s)	184, 185, 340, 341, 373, 542
BseMII	CTCAG	2 cut(s)	302, 350
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	292
BshFI	GGCC	3 cut(s)	30, 282, 314
BshNI	GGYRCC	3 cut(s)	354, 436, 512
BsiHKAI	GWGCWC	1 cut(s)	554
BsiSI	CCGG	8 cut(s)	112, 120, 283, 311, 335, 367, 440, 518
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	6 cut(s)	184, 185, 340, 341, 373, 542
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	30, 282, 314
Bsp1286I	GDGCHC	3 cut(s)	289, 347, 554
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	6, 171
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	268, 352, 542
BspANI	GGCC	3 cut(s)	30, 282, 314
BspCNI	CTCAG	2 cut(s)	301, 351
BspLI	GGNNCC	6 cut(s)	204, 332, 356, 438, 514, 617
BspPI	GGATC	1 cut(s)	179
BspT107I	GGYRCC	3 cut(s)	354, 436, 512
BsrFI	RCCGGY	3 cut(s)	111, 366, 439
BsrGI	TGTACA	1 cut(s)	141
BssAI	RCCGGY	3 cut(s)	111, 366, 439
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	6, 171
BssNI	GRCGYC	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	13, 386, 505
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	141
BstBAI	YACGTR	3 cut(s)	139, 495, 561
BstDEI	CTNAG	3 cut(s)	264, 288, 359
BstF5I	GGATG	2 cut(s)	163, 217
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	9, 174
BstMBI	GATC	2 cut(s)	6, 171
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	4 cut(s)	282, 309, 333, 516
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	30, 282, 314
BtsCI	GGATG	2 cut(s)	163, 217
BtsIMutI	CAGTG	1 cut(s)	18
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	3 cut(s)	111, 366, 439
Cfr13I	GGNCC	2 cut(s)	114, 280
Csp6I	GTAC	3 cut(s)	142, 387, 513
CviAII	CATG	4 cut(s)	108, 183, 398, 620
CviQI	GTAC	3 cut(s)	142, 387, 513
DdeI	CTNAG	3 cut(s)	264, 288, 359
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	2 cut(s)	8, 173
DpnII	GATC	2 cut(s)	6, 171
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	289, 347
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	208
Eco72I	CACGTG	2 cut(s)	139, 495
EcoRV	GATATC	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	289, 347
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
FaeI	CATG	4 cut(s)	111, 186, 401, 623
FaiI	YATR	8 cut(s)	109, 184, 245, 247, 275, 318, 399, 621
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	107, 182, 397, 619
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	99, 269
FokI	GGATG	2 cut(s)	170, 224
FriOI	GRGCYC	2 cut(s)	289, 347
Fsp4HI	GCNGC	2 cut(s)	99, 269
FspBI	CTAG	2 cut(s)	216, 378
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	99, 269
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	30, 282, 314
HapII	CCGG	8 cut(s)	112, 120, 283, 311, 335, 367, 440, 518
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	4 cut(s)	111, 186, 401, 623
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	8 cut(s)	112, 120, 283, 311, 335, 367, 440, 518
HphI	GGTGA	6 cut(s)	67, 73, 200, 454, 525, 557
Hpy166II	GTNNAC	3 cut(s)	142, 409, 469
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	2 cut(s)	34, 209
Hpy8I	GTNNAC	3 cut(s)	142, 409, 469
Hpy99I	CGWCG	2 cut(s)	128, 343
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	13, 386, 505
HpyCH4IV	ACGT	4 cut(s)	138, 411, 494, 560
HpyCH4V	TGCA	1 cut(s)	243
HpyF3I	CTNAG	3 cut(s)	264, 288, 359
HpySE526I	ACGT	4 cut(s)	138, 411, 494, 560
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	4 cut(s)	111, 186, 401, 623
HspAI	GCGC	1 cut(s)	437
KasI	GGCGCC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	6, 171
LmnI	GCTCC	2 cut(s)	557, 615
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	216, 378
MaeII	ACGT	4 cut(s)	138, 411, 494, 560
MaeIII	GTNAC	4 cut(s)	188, 362, 556, 578
MalI	GATC	2 cut(s)	8, 173
MboI	GATC	2 cut(s)	6, 171
MboII	GAAGA	3 cut(s)	33, 70, 214
MhlI	GDGCHC	3 cut(s)	289, 347, 554
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	8 cut(s)	41, 89, 127, 144, 216, 384, 447, 595
MspA1I	CMGCKG	2 cut(s)	98, 292
MspI	CCGG	8 cut(s)	112, 120, 283, 311, 335, 367, 440, 518
MspR9I	CCNGG	4 cut(s)	284, 311, 335, 518
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	4 cut(s)	284, 311, 335, 518
NdeII	GATC	2 cut(s)	6, 171
NlaIII	CATG	4 cut(s)	111, 186, 401, 623
NlaIV	GGNNCC	6 cut(s)	204, 332, 356, 438, 514, 617
NmuCI	GTSAC	2 cut(s)	188, 578
NspI	RCATGY	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	100, 270
PleI	GAGTC	1 cut(s)	388
PluTI	GGCGCC	1 cut(s)	440
PmaCI	CACGTG	2 cut(s)	139, 495
PmlI	CACGTG	2 cut(s)	139, 495
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	3 cut(s)	139, 495, 561
PspCI	CACGTG	2 cut(s)	139, 495
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	6 cut(s)	204, 332, 356, 438, 514, 617
PspPI	GGNCC	2 cut(s)	114, 280
PvuII	CAGCTG	2 cut(s)	98, 292
RsaI	GTAC	3 cut(s)	143, 388, 514
RsaNI	GTAC	3 cut(s)	142, 387, 513
SatI	GCNGC	2 cut(s)	99, 269
Sau3AI	GATC	2 cut(s)	6, 171
Sau96I	GGNCC	2 cut(s)	114, 280
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	4 cut(s)	284, 311, 335, 518
SduI	GDGCHC	3 cut(s)	289, 347, 554
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	438
SgrAI	CRCCGGYG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	24, 32
SmoI	CTYRAG	2 cut(s)	24, 32
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	3 cut(s)	268, 352, 542
SspDI	GGCGCC	1 cut(s)	436
SspMI	CTAG	2 cut(s)	216, 378
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	282, 309, 333, 516
TaaI	ACNGT	3 cut(s)	13, 386, 505
TaiI	ACGT	4 cut(s)	141, 414, 497, 563
TaqI	TCGA	1 cut(s)	482
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	271
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	188, 578
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	188, 578
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	2 cut(s)	216, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.