pycom09g09350

CCAAT enhancer-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008077
Physical Location & Seq
Forward (+)
7488145 .. 7489842
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGAATACGTCTAAGGCAGAAATGTTTATCGGACTTATTCTGAGGGCAATGAAAAATGATCTGAACTTGAAGCGTGCAGCTGCTTTCGCAAAGCGTGTATTGCAGGTTGCGCTTCAGCAGCCACCTCAATATGCATGTGGATGCCTCTTCCTCCTTTCAGAAGTTCTCAAGGCAAGACCCCCATTATGGAACATGGTGCTCCAGAATGAGTCAGTTGATGATGAACTTGAGCATTTTAAAGATGTTCGAGAAGAAACTGATGATAACCCCACCCCTGTCCCAGAGAAACAGGAACTCGATGTTGAGCTTGGACACAGCAATGATGCTGCCAATTCTGACCATGATTCTTCAGAAGATGATAACGAATCCACCGCCTCTTATTCTGAAGGTGAAGGTTCTGATGAAGCAGAGGAGTTTTTTGTGACAAAAGATCGAAATGATTCCAAACCAACCCCTGCTAGTAATGTGCAACCACCACAAGCATCATCCGAGAAGCCTCGCTTGCCTGGAGACTATGATCCACGACGCAGAGAACCCTCTTATTGTAATGCGGATCGTGTGAGCTGGTGGGAGCTGACAGTACTTGCTTCACATGTGCACCCTTCGGTTTCAACCATGGCAAAGACCCTACTCTCTGGGGCAAACATTGTCTACAATGGAAACCCGCTGAATGATCTATCACTTACTGCTTTTCTGGACAAGTTTATGGAGAAGAAACCAAAGCAAAGCTCATGGCATGGTGGTTCACAAATTGAACCTGCGAAAAAGGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF

Protein Analysis

259

Amino Acids

28.76

Weight (kDa)

4.89

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBF PF03914 1 - 207 2e-33 CBF/Mak21 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 94, 766
AccI GTMKAC 1 cut(s) 651
AciI CCGC 3 cut(s) 372, 551, 665
AclWI GGATC 2 cut(s) 512, 561
AcuI CTGAAG 3 cut(s) 98, 333, 405
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 3 cut(s) 70, 612, 755
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 5 cut(s) 80, 307, 564, 574, 729
AluI AGCT 5 cut(s) 80, 307, 564, 574, 729
Alw21I GWGCWC 2 cut(s) 201, 600
Alw26I GTCTC 1 cut(s) 504
Alw44I GTGCAC 1 cut(s) 596
AlwI GGATC 2 cut(s) 512, 561
ApaLI GTGCAC 1 cut(s) 596
ApeKI GCWGC 4 cut(s) 77, 80, 118, 326
Asp700I GAANNNNTTC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 600
Bbv12I GWGCWC 2 cut(s) 201, 600
BbvI GCAGC 4 cut(s) 67, 89, 130, 313
BciT130I CCWGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 1 cut(s) 459
BfuAI ACCTGC 2 cut(s) 94, 766
BisI GCNGC 4 cut(s) 78, 81, 119, 327
BlsI GCNGC 4 cut(s) 79, 82, 120, 328
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 3 cut(s) 131, 313, 491
BpmI CTGGAG 2 cut(s) 185, 528
BpuEI CTTGAG 2 cut(s) 152, 248
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 54, 325
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 146, 485
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 2 cut(s) 54, 325
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 600
BseXI GCAGC 4 cut(s) 67, 89, 130, 313
BsgI GTGCAG 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 201, 600
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 201, 600
Bsp143I GATC 5 cut(s) 58, 430, 517, 553, 673
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 3 cut(s) 372, 551, 665
BspCNI CTCAG 1 cut(s) 33
BspMI ACCTGC 2 cut(s) 94, 766
BspPI GGATC 2 cut(s) 512, 561
BsrDI GCAATG 2 cut(s) 54, 325
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 5 cut(s) 58, 430, 517, 553, 673
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 75, 503
BstDEI CTNAG 2 cut(s) 12, 41
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 146, 485
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 5 cut(s) 61, 433, 520, 556, 676
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 5 cut(s) 58, 430, 517, 553, 673
BstMWI GCNNNNNNNGC 5 cut(s) 86, 100, 109, 118, 502
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 2 cut(s) 138, 596
BstSCI CCNGG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 600
BstV1I GCAGC 4 cut(s) 67, 89, 130, 313
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 146, 485
BveI ACCTGC 2 cut(s) 94, 766
Cac8I GCNNGC 2 cut(s) 75, 503
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 534
Csp6I GTAC 1 cut(s) 581
CviAII CATG 7 cut(s) 135, 193, 341, 593, 616, 732, 737
CviJI RGCY 7 cut(s) 80, 121, 307, 496, 564, 574, 729
CviKI_1 RGCY 7 cut(s) 80, 121, 307, 496, 564, 574, 729
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 2 cut(s) 12, 41
DpnI GATC 5 cut(s) 60, 432, 519, 555, 675
DpnII GATC 5 cut(s) 58, 430, 517, 553, 673
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 615
Eco57I CTGAAG 3 cut(s) 98, 333, 405
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 7 cut(s) 138, 196, 344, 596, 619, 735, 740
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 263
FatI CATG 7 cut(s) 134, 192, 340, 592, 615, 731, 736
FauI CCCGC 1 cut(s) 672
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 4 cut(s) 78, 81, 119, 327
FokI GGATG 2 cut(s) 153, 472
Fsp4HI GCNGC 4 cut(s) 78, 81, 119, 327
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 78, 81, 119, 327
GsuI CTGGAG 2 cut(s) 185, 528
HgaI GACGC 1 cut(s) 534
HhaI GCGC 1 cut(s) 112
Hin1II CATG 7 cut(s) 138, 196, 344, 596, 619, 735, 740
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 4 cut(s) 209, 344, 365, 440
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 3 cut(s) 598, 652, 746
Hpy188I TCNGA 9 cut(s) 32, 42, 63, 160, 337, 352, 385, 400, 490
Hpy188III TCNNGA 4 cut(s) 202, 248, 695, 774
Hpy8I GTNNAC 3 cut(s) 598, 652, 746
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 3 cut(s) 380, 386, 612
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 77, 103, 134, 469, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 100, 109, 118, 502
HpyF3I CTNAG 2 cut(s) 12, 41
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 7 cut(s) 138, 196, 344, 596, 619, 735, 740
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 5 cut(s) 58, 430, 517, 553, 673
LmnI GCTCC 2 cut(s) 204, 571
Lsp1109I GCAGC 4 cut(s) 67, 89, 130, 313
LweI GCATC 3 cut(s) 131, 313, 491
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 421
MalI GATC 5 cut(s) 60, 432, 519, 555, 675
MboI GATC 5 cut(s) 58, 430, 517, 553, 673
MboII GAAGA 5 cut(s) 139, 263, 339, 365, 724
MhlI GDGCHC 2 cut(s) 201, 600
MluCI AATT 2 cut(s) 331, 750
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 8 cut(s) 36, 135, 155, 161, 385, 403, 507, 547
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 139, 318
MspA1I CMGCKG 2 cut(s) 80, 667
MspR9I CCNGG 1 cut(s) 507
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 5 cut(s) 86, 100, 109, 118, 502
NcoI CCATGG 1 cut(s) 615
NdeII GATC 5 cut(s) 58, 430, 517, 553, 673
NlaIII CATG 7 cut(s) 138, 196, 344, 596, 619, 735, 740
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 138, 596
PciI ACATGT 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 344, 365, 440
PkrI GCNGC 4 cut(s) 79, 82, 120, 328
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 2 cut(s) 139, 318
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 78, 81, 119, 327
Sau3AI GATC 5 cut(s) 58, 430, 517, 553, 673
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 2 cut(s) 201, 600
SfaNI GCATC 3 cut(s) 131, 313, 491
SmiMI CAYNNNNRTG 2 cut(s) 139, 318
SmlI CTYRAG 2 cut(s) 167, 227
SmoI CTYRAG 2 cut(s) 167, 227
Sse9I AATT 2 cut(s) 331, 750
SsiI CCGC 3 cut(s) 372, 551, 665
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 11
TaqI TCGA 3 cut(s) 247, 297, 433
TasI AATT 2 cut(s) 331, 750
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 3 cut(s) 344, 365, 440
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 4 cut(s) 77, 80, 118, 326
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 4 cut(s) 17, 65, 237, 417
VneI GTGCAC 1 cut(s) 596
XceI RCATGY 2 cut(s) 138, 596
XmiI GTMKAC 1 cut(s) 651
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.