pycom09g18180

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006579
Physical Location & Seq
Forward (+)
18773148 .. 18779068
5921 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3024 bp
ATGGCGGAACCGACGGCGGAAGACGAGAAGCCCTTGATGCTCAAAATCGCTCAAATCTTCGACGACGCTCGGACTTCCAACGCCAGCCACAACCGCAAGCTCAAGGAGCTCTCCGCCCTCCGCTCAAAAACGTCGTCCTCCTCCCTCTTCTTCTCTGCATTCTGCAAAACTCTACTTCCCCTCTTCTCCTTCCAGAGGCGTACTGCCTCGGCCGAACGCATAGTCCGGTTCATCTCCGCCTTTGCAACCGCCCGAGACTCCGGCAATGTCTCCCAATCCGACGCTTTCTTGAAGGACTTCCTCAGGTTCCTTTTACCGGCGTCCTACGCCGCCAACAAGACTTCGAGGTCCCGAGCCTGCCAGATTGTTTCTGAGATCATCGTGCAATTACCAGATGATGCAGAAGTGAGCAGTGATCTCTGGGACGAAGTAATAGATTGTATGAAGTTGTGTGCGGGGGACAAGGTCCCTGTAATCCGTACATGTGCAGTTAGAGCTCTTTCACGTTTTGCAAGTGATTGCGAGAACAGCGATATCCTTGATTTATTTCTTGAGATGCTTCCTGTAGAACAAACTGTGGAGGTTCGGAAGGCAATAGTGTTATCTTTGCCTCCTTCAAATGCAACTGCACAAGCAATCATTGGTTGTACATTAGATGTCAGTGAATCAGTGCGCAAAGCAGCATACCATGTTCTAGCTAGTAAATTTCCTCTTCAAAGTCTGAGTATCAAGCATAGAACATTAATTCTTCAGAGGGGACTTGCTGATCGTTCTGTTGCTGTTTCAAATGAGTGTCTTAAGTTAATGAAAGATGAATGGTTAAATAATTGCTGCAAAGGAGACCCTTTAGAGCTACTCAAGTATCTTGATGTTGAGACCTATGAATTGGTTGGGGAGTCTGTGGCTTGTGCACTGTTAAAAGCTGGTTTGATTAAATTACACGATGGTGAAAGTATTCGGCACTACATATCATCTACGAATGAGAGAATTGAAGAAATTGTGGTTGAACAGGCAAAAGGCTCTGATGCTGCTTCTACAACGGGCACTGAAGCAACAGTATATGCAGCGGAAGCTTCAGACACCAGTGACCTTCTTGAGAAAATTCTGCCAGCAACAATTTCTGATTATATAGATTTAGTCAAAGCTCACATTGATGCTGGTGAGTCAGGACCAAATTATCGCTTTGCATGTCGGCAGCTACTATTGCTTGGTGCAATGCTTGATTTTTCCGATGTTACAAACAGGAAGGTTGCTAGTACGTTTGTGCTGGAATTGCTGAATAAGCCTTTTGACCATGAAGTTGATGAGTATGGAAACATGGTTGTTATTGGAGATGGAATAAATCTTGGTGGTGATAGAGATTGGGCTGAAGCTGTGTTTGGATTAGCAAGCAAGGTGCATGCTGCTAGTGGTGAGTTTGAAGAAGTTGTTCTTGGCGTTGTAGAGGAACTTGCTCGTCCTTGCAGGGAAAGAACAGCGGATTTTCTGCAGTGGATGCACTGCCTTGCTGTTTTCGGCCTTTGCCTGGAGAAGGCAAGGTCATATCATTGGATTCAAGGGAAAGCTATTGAGCCTACTGAACTACTGCAATCTTTATTGCTTCCAGCGGCAAAACATTCTCACTTGGAAGTCCAAAGGATTGCAGCCAGGTGTCTTGGGCTTTTTGGATTGTTAGATAAAAAGCCAAGCCAGGAACTAGTAAAGCAGTTAAAGCTTTCATTTATTAAGGGACCAGCTCCAATTAGCATAGTTGCTTGCAAGGCATTATTTGATCTTGGAATGTGGCATAATCCTCAGGAAGTTGATAGGGTGACAGGCCTGGACATTTCGACACAAGTTCAAGAGTATGATATAACTTCTAGTCCTTTAAACCTTTCTGATACAGATGGGATATCGAACATTAAATTGCTTGATCTTTTGTACGCTGGAATTATGAAAGATGATTGGGACAATTCTCTAGCAAGTGATGAAAATGAATCTGTTCATTCCGCTCTTGGTGAGGGGTTTGCAAAAATTCTTCTTCTAAGTGAGAACTACCAAGGCATGCCTGCTTCTTTACATCCTTTGCTTTTATCGAAGCTCATTACCCTGTACTTCAGCAACGAATCTAAAAACTTGCAGAGGTTGAAACAGTGCTTATCCGTGTTCTTTGAGAATTACCCTTCCCTCGCAGCTAATCACAAGAAGTGTATAGCCAAGGCTTTCATTCCAGTCATGCGTTCTATGTGGCCGGGTATCAATGGCACTGCTGGAGGTTCTGCTTCCGTGGTTTCTAATATGCGTAAGCGTGCAGTCCAAGTATCACATTTTATGCTGCACATCATGCAGGCTCCCTTATATAAAAATAGAGCAGAGGAACAAAGTGATACCGGGGAACTTCCAGAAGTGATAGAAGAACCTCCACTGGAGTGTGGTGAGGAGGGGCTTGCCATACGCATAGCTGCAGAGGTTGCTACTTTCCGTTCAAAGAAGACACCTGCAGAGAAGGCATATGTGTCAGCATTATGCAGAGTACTTGTCATGCTCCATTTCCGGTTATCAGAGCAAGAGGCAATCCAGTTAATGAGGAGGCTTTTAATTCGTGTGGTAGAATCTGCATCAGCAGAGAAGGATCTTCTCAAAGAGTTAAGGCAAATGGCTGACCATCTCAAGGCACAAGATAGGTATCCAGATCAGGAAATGTCGAAAGATCAAGCTAATCTTATATTTGGTAAGTTAGAACTAGGCTTCAACTTGGATTTCAATGTTTCTGTTGAAATGCCGCAGACCCCAGCTCCTCGCTCCACTAAGCCAACCCGTTCTAGAAAACGAGTGACACTTGAAGAGTCATCTTCCGATGATGAAGATAGCTCACCCACCTCCGTTGTCGCTAATAATCTTGGCAGAATAAGCGCTCGCTCACAGAGAGCAAGCAAGACCGCAGCACTATCGAAGATGACTGCTAATGAAACCTTGAAGATCGACGAAGATGATGAAGAGGAAGAAGGCTCGGAGGTTACATCTGATGAAGATGGATCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

1008

Amino Acids

111.27

Weight (kDa)

5.25

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd3 PF12719 500 - 844 3.6e-53 Nuclear condensing complex subunits, C-term domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2485
AasI GACNNNNNNGTC 1 cut(s) 346
Acc16I TGCGCA 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 2485
AccBSI CCGCTC 2 cut(s) 123, 1991
AclWI GGATC 2 cut(s) 2619, 3022
AcoI YGGCCR 2 cut(s) 210, 2228
AcsI RAATTY 3 cut(s) 704, 1101, 2013
AcuI CTGAAG 5 cut(s) 734, 1059, 1068, 1389, 2080
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 7 cut(s) 202, 481, 649, 1258, 1922, 2093, 2514
AfeI AGCGCT 1 cut(s) 2893
AfiI CCNNNNNNNGG 5 cut(s) 195, 316, 1525, 1531, 2650
AflII CTTAAG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 482
AhlI ACTAGT 1 cut(s) 1696
AjnI CCWGG 4 cut(s) 1524, 1646, 1689, 1818
AjuI GAANNNNNNNTTGG 4 cut(s) 1362, 1394, 1416, 1448
AleI CACNNNNGTG 2 cut(s) 945, 2407
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
Alw21I GWGCWC 3 cut(s) 111, 499, 913
Alw26I GTCTC 4 cut(s) 249, 274, 834, 869
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 2 cut(s) 2619, 3022
Ama87I CYCGRG 2 cut(s) 252, 351
Aor51HI AGCGCT 1 cut(s) 2893
AoxI GGCC 4 cut(s) 210, 1516, 1816, 2228
ApaLI GTGCAC 1 cut(s) 909
ApoI RAATTY 3 cut(s) 704, 1101, 2013
ArsI GACNNNNNNTTYG 4 cut(s) 119, 151, 207, 239
AseI ATTAAT 1 cut(s) 743
Asp700I GAANNNNTTC 4 cut(s) 296, 954, 1428, 1980
AspLEI GCGC 2 cut(s) 675, 2894
AspS9I GGNCC 4 cut(s) 348, 466, 1169, 1730
AsuC2I CCSGG 2 cut(s) 2232, 2371
AsuHPI GGTGA 8 cut(s) 959, 1172, 1364, 1424, 1822, 2009, 2426, 2844
AvaI CYCGRG 2 cut(s) 252, 351
AvaII GGWCC 4 cut(s) 348, 466, 1169, 1730
AxyI CCTNAGG 2 cut(s) 302, 1794
BaeGI GKGCMC 2 cut(s) 913, 1046
BaeI ACNNNNGTAYC 2 cut(s) 845, 878
BanII GRGCYC 2 cut(s) 111, 499
BbsI GAAGAC 2 cut(s) 27, 2477
Bbv12I GWGCWC 3 cut(s) 111, 499, 913
BccI CCATC 5 cut(s) 938, 1328, 1880, 2652, 3005
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 2910, 2944
BciT130I CCWGG 4 cut(s) 1526, 1648, 1691, 1820
BciVI GTATCC 1 cut(s) 2676
BcnI CCSGG 2 cut(s) 2232, 2371
BcoDI GTCTC 4 cut(s) 249, 274, 834, 869
BcuI ACTAGT 1 cut(s) 1696
BfaI CTAG 9 cut(s) 695, 699, 1254, 1407, 1697, 1860, 1958, 2723, 2802
BfmI CTRYAG 4 cut(s) 564, 1487, 2442, 2478
BfoI RGCGCY 1 cut(s) 2895
BfrI CTTAAG 1 cut(s) 797
BfuAI ACCTGC 1 cut(s) 2485
BfuI GTATCC 1 cut(s) 2676
BmcAI AGTACT 1 cut(s) 2514
Bme1390I CCNGG 6 cut(s) 1526, 1648, 1691, 1820, 2232, 2371
Bme18I GGWCC 4 cut(s) 348, 466, 1169, 1730
BmeT110I CYCGRG 2 cut(s) 252, 351
BmgT120I GGNCC 4 cut(s) 348, 466, 1169, 1730
BmiI GGNNCC 6 cut(s) 9, 308, 350, 468, 1731, 2331
BmrFI CCNGG 6 cut(s) 1526, 1648, 1691, 1820, 2232, 2371
BmsI GCATC 7 cut(s) 27, 388, 546, 1015, 1144, 1485, 2606
BpiI GAAGAC 2 cut(s) 27, 2477
BpmI CTGGAG 3 cut(s) 1547, 2271, 2426
BpuEI CTTGAG 5 cut(s) 86, 572, 842, 1115, 2633
BpuMI CCSGG 2 cut(s) 2232, 2371
BsaBI GATNNNNATC 1 cut(s) 2664
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 834, 869
BsaJI CCNNGG 5 cut(s) 207, 2038, 2196, 2265, 2370
BsaWI WCCGGW 2 cut(s) 225, 2532
BsaXI ACNNNNNCTCC 2 cut(s) 2758, 2788
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 316, 1525, 1531, 2650
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 4 cut(s) 1083, 2210, 2409, 2557
Bse21I CCTNAGG 2 cut(s) 302, 1794
Bse3DI GCAATG 2 cut(s) 271, 1221
Bse8I GATNNNNATC 1 cut(s) 2664
BseBI CCWGG 4 cut(s) 1526, 1648, 1691, 1820
BseDI CCNNGG 5 cut(s) 207, 2038, 2196, 2265, 2370
BseGI GGATG 2 cut(s) 1500, 2059
BseJI GATNNNNATC 1 cut(s) 2664
BseLI CCNNNNNNNGG 5 cut(s) 195, 316, 1525, 1531, 2650
BseMI GCAATG 2 cut(s) 271, 1221
BseMII CTCAG 4 cut(s) 316, 363, 713, 1808
BseNI ACTGG 4 cut(s) 1083, 2210, 2409, 2557
BseRI GAGGAG 4 cut(s) 130, 2432, 2581, 2766
BseSI GKGCMC 2 cut(s) 913, 1046
BseX3I CGGCCG 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 2770
BsgI GTGCAG 4 cut(s) 507, 612, 2300, 2310
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 212, 1518, 1818, 2230
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 3 cut(s) 111, 499, 913
BsiHKCI CYCGRG 2 cut(s) 252, 351
BsiSI CCGG 6 cut(s) 226, 261, 317, 2231, 2370, 2533
BslFI GGGAC 7 cut(s) 334, 437, 452, 473, 771, 1743, 1961
BslI CCNNNNNNNGG 5 cut(s) 195, 316, 1525, 1531, 2650
BsmAI GTCTC 4 cut(s) 249, 274, 834, 869
BsmFI GGGAC 7 cut(s) 334, 437, 452, 473, 771, 1743, 1961
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 4 cut(s) 212, 1518, 1818, 2230
Bso31I GGTCTC 2 cut(s) 834, 869
BsoBI CYCGRG 2 cut(s) 252, 351
Bsp1286I GDGCHC 4 cut(s) 111, 499, 913, 1046
Bsp1407I TGTACA 1 cut(s) 647
BspANI GGCC 4 cut(s) 212, 1518, 1818, 2230
BspCNI CTCAG 4 cut(s) 315, 364, 714, 1807
BspLI GGNNCC 6 cut(s) 9, 308, 350, 468, 1731, 2331
BspMAI CTGCAG 3 cut(s) 1491, 2446, 2482
BspMI ACCTGC 1 cut(s) 2485
BspPI GGATC 2 cut(s) 2619, 3022
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 2 cut(s) 834, 869
BsrBI CCGCTC 2 cut(s) 123, 1991
BsrDI GCAATG 2 cut(s) 271, 1221
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 647
BsrI ACTGG 4 cut(s) 1083, 2210, 2409, 2557
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 5 cut(s) 207, 2038, 2196, 2265, 2370
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 2038, 2196
Bst2UI CCWGG 4 cut(s) 1526, 1648, 1691, 1820
Bst4CI ACNGT 4 cut(s) 577, 915, 1057, 2133
Bst6I CTCTTC 5 cut(s) 152, 188, 717, 2817, 2970
BstACI GRCGYC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 797
BstAPI GCANNNNNTGC 3 cut(s) 1495, 2323, 2450
BstAUI TGTACA 1 cut(s) 647
BstDEI CTNAG 6 cut(s) 302, 372, 722, 1794, 2024, 2787
BstDSI CCRYGG 1 cut(s) 2265
BstENI CCTNNNNNAGG 2 cut(s) 193, 1529
BstF5I GGATG 2 cut(s) 1500, 2059
BstH2I RGCGCY 1 cut(s) 2895
BstHHI GCGC 2 cut(s) 675, 2894
BstMAI GTCTC 4 cut(s) 249, 274, 834, 869
BstMCI CGRYCG 1 cut(s) 213
BstNI CCWGG 4 cut(s) 1526, 1648, 1691, 1820
BstNSI RCATGY 4 cut(s) 486, 1191, 1403, 2047
BstSCI CCNGG 6 cut(s) 1524, 1646, 1689, 1818, 2230, 2369
BstSFI CTRYAG 4 cut(s) 564, 1487, 2442, 2478
BstSLI GKGCMC 2 cut(s) 913, 1046
BstV2I GAAGAC 2 cut(s) 27, 2477
BstX2I RGATCY 2 cut(s) 2611, 3014
BstYI RGATCY 2 cut(s) 2611, 3014
BstZI CGGCCG 1 cut(s) 210
Bsu36I CCTNAGG 2 cut(s) 302, 1794
BsuI GTATCC 1 cut(s) 2676
BsuRI GGCC 4 cut(s) 212, 1518, 1818, 2230
BtgI CCRYGG 1 cut(s) 2265
BtsCI GGATG 2 cut(s) 1500, 2059
BtsI GCAGTG 4 cut(s) 418, 1496, 1498, 2244
BveI ACCTGC 1 cut(s) 2485
CfoI GCGC 2 cut(s) 675, 2894
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 348, 466, 1169, 1730
CseI GACGC 3 cut(s) 74, 290, 309
Csp6I GTAC 7 cut(s) 201, 480, 648, 1257, 1921, 2092, 2513
CspCI CAANNNNNGTGG 2 cut(s) 2845, 2880
CviQI GTAC 7 cut(s) 201, 480, 648, 1257, 1921, 2092, 2513
DdeI CTNAG 6 cut(s) 302, 372, 722, 1794, 2024, 2787
DraI TTTAAA 1 cut(s) 1869
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 2 cut(s) 210, 2228
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 5 cut(s) 152, 188, 717, 2817, 2970
EarI CTCTTC 5 cut(s) 152, 188, 717, 2817, 2970
EciI GGCGGA 4 cut(s) 20, 32, 103, 226
Ecl136II GAGCTC 2 cut(s) 109, 497
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 2038, 2196
Eco147I AGGCCT 1 cut(s) 1818
Eco24I GRGCYC 2 cut(s) 111, 499
Eco31I GGTCTC 2 cut(s) 834, 869
Eco32I GATATC 2 cut(s) 535, 1893
Eco47I GGWCC 4 cut(s) 348, 466, 1169, 1730
Eco47III AGCGCT 1 cut(s) 2893
Eco52I CGGCCG 1 cut(s) 210
Eco53kI GAGCTC 2 cut(s) 109, 497
Eco57I CTGAAG 5 cut(s) 734, 1059, 1068, 1389, 2080
Eco81I CCTNAGG 2 cut(s) 302, 1794
Eco88I CYCGRG 2 cut(s) 252, 351
EcoICRI GAGCTC 2 cut(s) 109, 497
EcoNI CCTNNNNNAGG 2 cut(s) 193, 1529
EcoO109I RGGNCCY 2 cut(s) 348, 466
EcoRII CCWGG 4 cut(s) 1524, 1646, 1689, 1818
EcoRV GATATC 2 cut(s) 535, 1893
EcoT14I CCWWGG 2 cut(s) 2038, 2196
EcoT38I GRGCYC 2 cut(s) 111, 499
ErhI CCWWGG 2 cut(s) 2038, 2196
FalI AAGNNNNNCTT 4 cut(s) 1416, 1448, 2685, 2717
FaqI GGGAC 7 cut(s) 334, 437, 452, 473, 771, 1743, 1961
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 2491
FokI GGATG 2 cut(s) 1507, 2046
FriOI GRGCYC 2 cut(s) 111, 499
FspBI CTAG 9 cut(s) 695, 699, 1254, 1407, 1697, 1860, 1958, 2723, 2802
FspI TGCGCA 1 cut(s) 674
GlaI GCGC 2 cut(s) 674, 2893
GsaI CCCAGC 1 cut(s) 2774
GsuI CTGGAG 3 cut(s) 1547, 2271, 2426
HaeII RGCGCY 1 cut(s) 2895
HaeIII GGCC 4 cut(s) 212, 1518, 1818, 2230
HapII CCGG 6 cut(s) 226, 261, 317, 2231, 2370, 2533
HgaI GACGC 3 cut(s) 74, 290, 309
HhaI GCGC 2 cut(s) 675, 2894
Hin1I GRCGYC 1 cut(s) 320
Hin6I GCGC 2 cut(s) 673, 2892
HinP1I GCGC 2 cut(s) 673, 2892
HindIII AAGCTT 2 cut(s) 1071, 1712
HinfI GANTC 9 cut(s) 257, 665, 896, 1163, 1552, 1976, 2105, 2591, 2825
HpaII CCGG 6 cut(s) 226, 261, 317, 2231, 2370, 2533
HphI GGTGA 8 cut(s) 959, 1172, 1364, 1424, 1822, 2009, 2426, 2844
Hpy166II GTNNAC 1 cut(s) 911
Hpy8I GTNNAC 1 cut(s) 911
Hpy99I CGWCG 6 cut(s) 16, 65, 68, 136, 284, 2966
HpyCH4III ACNGT 4 cut(s) 577, 915, 1057, 2133
HpyCH4IV ACGT 3 cut(s) 131, 505, 1259
HpyF3I CTNAG 6 cut(s) 302, 372, 722, 1794, 2024, 2787
HpySE526I ACGT 3 cut(s) 131, 505, 1259
Hsp92I GRCGYC 1 cut(s) 320
HspAI GCGC 2 cut(s) 673, 2892
LmnI GCTCC 6 cut(s) 106, 1741, 2335, 2529, 2779, 2786
LweI GCATC 7 cut(s) 27, 388, 546, 1015, 1144, 1485, 2606
MaeI CTAG 9 cut(s) 695, 699, 1254, 1407, 1697, 1860, 1958, 2723, 2802
MaeII ACGT 3 cut(s) 131, 505, 1259
MaeIII GTNAC 5 cut(s) 1085, 1234, 1810, 2812, 2995
MbiI CCGCTC 2 cut(s) 123, 1991
MflI RGATCY 2 cut(s) 2611, 3014
MhlI GDGCHC 4 cut(s) 111, 499, 913, 1046
MlyI GAGTC 4 cut(s) 251, 905, 1172, 2834
MmeI TCCRAC 2 cut(s) 102, 303
MroXI GAANNNNTTC 4 cut(s) 296, 954, 1428, 1980
MslI CAYNNNNRTG 3 cut(s) 945, 1152, 2407
MspA1I CMGCKG 3 cut(s) 1067, 1478, 1607
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 6 cut(s) 226, 261, 317, 2231, 2370, 2533
MspR9I CCNGG 6 cut(s) 1526, 1648, 1691, 1820, 2232, 2371
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 4 cut(s) 1526, 1648, 1691, 1820
NciI CCSGG 2 cut(s) 2232, 2371
NdeI CATATG 1 cut(s) 2491
NlaIV GGNNCC 6 cut(s) 9, 308, 350, 468, 1731, 2331
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 1085, 1810, 2812
NsbI TGCGCA 1 cut(s) 674
NspI RCATGY 4 cut(s) 486, 1191, 1403, 2047
OliI CACNNNNGTG 2 cut(s) 945, 2407
PaeI GCATGC 2 cut(s) 1403, 2047
PaqCI CACCTGC 1 cut(s) 2485
PceI AGGCCT 1 cut(s) 1818
PciI ACATGT 1 cut(s) 482
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 4 cut(s) 296, 954, 1428, 1980
PfeI GAWTC 5 cut(s) 665, 1552, 1976, 2105, 2591
PflFI GACNNNGTC 1 cut(s) 464
PleI GAGTC 4 cut(s) 251, 904, 1171, 2833
PpsI GAGTC 4 cut(s) 251, 904, 1171, 2833
PpuMI RGGWCCY 2 cut(s) 348, 466
PscI ACATGT 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 743
Psp124BI GAGCTC 2 cut(s) 111, 499
Psp5II RGGWCCY 2 cut(s) 348, 466
Psp6I CCWGG 4 cut(s) 1524, 1646, 1689, 1818
PspFI CCCAGC 1 cut(s) 2770
PspGI CCWGG 4 cut(s) 1524, 1646, 1689, 1818
PspN4I GGNNCC 6 cut(s) 9, 308, 350, 468, 1731, 2331
PspPI GGNCC 4 cut(s) 348, 466, 1169, 1730
PspPPI RGGWCCY 2 cut(s) 348, 466
PstI CTGCAG 3 cut(s) 1491, 2446, 2482
PsuI RGATCY 2 cut(s) 2611, 3014
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 7 cut(s) 202, 481, 649, 1258, 1922, 2093, 2514
RsaNI GTAC 7 cut(s) 201, 480, 648, 1257, 1921, 2092, 2513
RseI CAYNNNNRTG 3 cut(s) 945, 1152, 2407
SacI GAGCTC 2 cut(s) 111, 499
Sau96I GGNCC 4 cut(s) 348, 466, 1169, 1730
ScaI AGTACT 1 cut(s) 2514
SchI GAGTC 4 cut(s) 251, 905, 1172, 2834
ScrFI CCNGG 6 cut(s) 1526, 1648, 1691, 1820, 2232, 2371
SduI GDGCHC 4 cut(s) 111, 499, 913, 1046
SfaNI GCATC 7 cut(s) 27, 388, 546, 1015, 1144, 1485, 2606
SfcI CTRYAG 4 cut(s) 564, 1487, 2442, 2478
SinI GGWCC 4 cut(s) 348, 466, 1169, 1730
SmiMI CAYNNNNRTG 3 cut(s) 945, 1152, 2407
SmlI CTYRAG 6 cut(s) 101, 551, 797, 857, 1094, 2648
SmoI CTYRAG 6 cut(s) 101, 551, 797, 857, 1094, 2648
SpeI ACTAGT 1 cut(s) 1696
SphI GCATGC 2 cut(s) 1403, 2047
SseBI AGGCCT 1 cut(s) 1818
SspMI CTAG 9 cut(s) 695, 699, 1254, 1407, 1697, 1860, 1958, 2723, 2802
SstI GAGCTC 2 cut(s) 111, 499
StuI AGGCCT 1 cut(s) 1818
StyD4I CCNGG 6 cut(s) 1524, 1646, 1689, 1818, 2230, 2369
StyI CCWWGG 2 cut(s) 2038, 2196
TaaI ACNGT 4 cut(s) 577, 915, 1057, 2133
TaiI ACGT 3 cut(s) 134, 508, 1262
TaqI TCGA 8 cut(s) 60, 344, 1829, 1895, 2075, 2684, 2930, 2961
TatI WGTACW 3 cut(s) 647, 2091, 2512
TauI GCSGC 3 cut(s) 332, 1610, 2764
TfiI GAWTC 5 cut(s) 665, 1552, 1976, 2105, 2591
TseFI GTSAC 3 cut(s) 1085, 1810, 2812
Tsp45I GTSAC 3 cut(s) 1085, 1810, 2812
TspGWI ACGGA 5 cut(s) 467, 2131, 2254, 2450, 2851
Tth111I GACNNNGTC 1 cut(s) 464
Vha464I CTTAAG 1 cut(s) 797
VneI GTGCAC 1 cut(s) 909
VpaK11BI GGWCC 4 cut(s) 348, 466, 1169, 1730
VspI ATTAAT 1 cut(s) 743
XagI CCTNNNNNAGG 2 cut(s) 193, 1529
XapI RAATTY 3 cut(s) 704, 1101, 2013
XbaI TCTAGA 1 cut(s) 2801
XceI RCATGY 4 cut(s) 486, 1191, 1403, 2047
XmnI GAANNNNTTC 4 cut(s) 296, 954, 1428, 1980
XspI CTAG 9 cut(s) 695, 699, 1254, 1407, 1697, 1860, 1958, 2723, 2802
ZrmI AGTACT 1 cut(s) 2514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.