Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

825341 .. 832171

Gene Structure 6831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGTACCTTCGGGGTCGTCCACTCCAATTGGTGGTGCCCAGTCTGTTTCGCCTTCACTTTTGCGTTCGAATTCTGGAATGTTGGGAGGTCAAGGTTCCCAGTCGGCTTTTCCCTCACTTGCCTCACCACGTACTCAATACGGTAATATGAATATGCTTGGCAATGTAGCCAATGTGTCTTCTCTCCTTAGTCAGTCATATGGAAATGGAATTTCAAATCCGGGCCTCTCTGGTCCTGGTAGCAGCCAACGCGGAGTTATGGATACTGGTGCTGAATCGGATCCACTTTCTGGTGTTGGCAATGGAATGGGTTTCAGTGCACCTTCTTCATCATATGGTGCATCAAACATGGCTAATCCTGGTACGTCTGGGCAAGGGCAAGGGCAACAATTTTCAAACCCGTCTGGTAACCAACTGTTGACAGAACAACAGCAGCAGCAACTTGAAACACAGAATTTCCAGCATGGTCAGCAGCCAATGCAACAGTTCTCTTCCCCTCACAGTACGCAGCAGCAGCAACACCAATTTCAGGCTATTCGAGGAGGCTTAGCTGGTGTTGGGTCGGTAAAGTTAGAGCCCCAATTGACAAATGATCAACATGGACAGCAGCAGCAGTTGCAGTCTTTAAGGAGCCTTGGTTCAGTGAAAATGGAACCACAGCAACTTCAAACAATGAGGAGCTTGCCACCTGTAAAATTGGAACCCCAACATTCCGATCAGCCATTGTTTTTGCATCAACAGCAGCAACAACAACAGCAACAACAACAAATCCTCCACATGTCAAGGCAGTCTTCTCAGAATGCTGCTGCCCAGATGAACATTATGCATCAGCAGAGATTATTGCAGTTACAACAACACCATCAACAGCAACATAACCAGCAACAGCAACAACACCAGCAACACCAGCAGCAGCAATTTTTGAAAGCAATGCCTCAACAGCGCCCCCAGTTACAGCAGCAGTTTCCACAGCAGAATCTGCCCATGAGATCTCCTGCAAAACCAGTATATGAGCCTGGAATGTGTGCTCAGCGTTTGACACATTATATGTATCAGCAACAACATAGGCCTGAAGACAACAACATTGAGTTCTGGAGAAAATTTGTTGCTGAATATTTTGTACCCCATGCGAAGAAGAAGTGGTGTGTTTCTATGTATGGAACTGGCCGACAAACAACTGGCGTTTTTCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCGACCGTTGAGGTTCTTCCCCGGCTTTTTAAAATCAAGTATGAAAGTGGTACTTTGGAGGAGCTTCTTTATGTTGATATGCCGCGTGAGTATCATAATTCATCTGGCCAGATTGTGTTGGACTATGCTAAAGCGATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGGGATGGTCAACTTCGTATAGTATTCTCTCCAGATCTGAAGATATGCTCTTGGGAATTTTGTGCAAGGCGCCATGAAGAGCTTATCCCTCGAAGATTACTGATACCTCAGGTTAGTCAGCTTGGTGCTGCAGCCCAAAAATACCAGGCTGCTACTCAAAATGCATCATCCAACATATCTCTTCCAGAGATACAAAGTAATTGTAATATGTTTGTATCGTCAGCTCGACAGTTGGCCAAAACCTTGGAAGTGCCATTAGTAAATGATTTAGGTTATACAAAGCGATATGTGAGGTGTCTTCAGATATCAGAAGTAGTTAATAGTATGAAAGACTTGATTGATTACAGCCGAGAGACGGGGACTGGACCTATGGAGAGCTTGGCCAAGTTTCCTCGAAGGACGAGTGCTTCGTCTGGCTTTCACAGTCAAGCACAGCAGTCCGAGGAGCAAATGCAGCAGCAACAGCAACAACAAACGATTGGCCAGAATTCAAACGGAGATCCAGGCTCTGTCCAGGCCGCCGCTACACAAATTGCTGTCAGTAATGGTATTGCGAGTGTAAATAATGCTCCAAACACAGCATCCACATCTACCTCTGCAAGCACCATTGTTGGGCTCCTCCATCAGAATTCAATGAATTCCAGACAGCAAAGTTCTATGAATAACACAAACAGTCCCTATGGAGGAAGTTCTGTTCAGATTCCATCCCCTGTTTCTGCTAGTGCAATCCCGCAGGCGCAACCAAACCCTTCTCCATTCCAGTCACCAACACCCTCATCAAATAATCCTTCACAAATATCTCATGGTGCCATGACAGCTGCCAATCACATGAGTACAGCAAATTCACCAGCAAATATATCCGTGCAACACCCAACCCTATCTGGCGAGGCTGATCCAAGTGATTCCCAGAGCTCTGTCCACAAATTTGTACACGAAATGATGATGTCCAACCAACTTAACGGCCCAGGCAGTATGGTCGGTGCTGGTTCTTTGGGAAACGATGTGAAAAACATGAATGGGATTTTGTCAACAAGCAACAACATAGGATTGAACGGCATGACTAACAATAGCTCAGGCATTGGGGGTGCTGGATTTGGGAGTATGGGTGGCGGACTTGGTCAGCAGCCTGCCATGGCGAATGGAATAAGAGCAGCAATGGGAAATAATTCTGTTATGAATGGAAGGGTCGGAATGGCATCAATGGCTCGAGAACAAAGTATGCATCATCAACAACAGGATCTGGGGAACCAGTTACTTAGTGGGCTTGGAGCGGTGAACGGCTTTAATAATCTTCAATTTGAGTGGAAACATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

911

Amino Acids

98.98

Weight (kDa)

8.76

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	344 - 598	7.7e-68	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	4, 35, 1482, 2219
AccB7I	CCANNNNNTGG	2 cut(s)	32, 290
AccBSI	CCGCTC	1 cut(s)	2684
AccII	CGCG	2 cut(s)	252, 1327
AciI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
AclWI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
AcoI	YGGCCR	5 cut(s)	1162, 1348, 1647, 1794, 1894
AcuI	CTGAAG	3 cut(s)	1089, 1472, 1697
AcyI	GRCGYC	1 cut(s)	1483
AfaI	GTAC	8 cut(s)	6, 133, 364, 505, 1119, 1294, 2248, 2343
AfiI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
AflIII	ACRYGT	1 cut(s)	777
AjnI	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
AloI	GAACNNNNNNTCC	4 cut(s)	622, 654, 2091, 2123
Alw21I	GWGCWC	3 cut(s)	322, 1027, 2327
Alw26I	GTCTC	1 cut(s)	1760
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
AlwNI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
Ama87I	CYCGRG	1 cut(s)	2619
AoxI	GGCC	9 cut(s)	223, 1064, 1162, 1348, 1647, 1794, 1894, 1929, 2374
ApaLI	GTGCAC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	1804, 1836
Asp700I	GAANNNNTTC	1 cut(s)	2578
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	942, 1485, 2152
AspS9I	GGNCC	4 cut(s)	223, 233, 1778, 2375
AsuC2I	CCSGG	2 cut(s)	222, 1264
AsuHPI	GGTGA	4 cut(s)	117, 2169, 2250, 2698
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	2619
AvaII	GGWCC	2 cut(s)	233, 1778
AxyI	CCTNAGG	2 cut(s)	1188, 1521
BaeGI	GKGCMC	2 cut(s)	40, 322
BalI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BanII	GRGCYC	3 cut(s)	579, 2031, 2327
BbsI	GAAGAC	4 cut(s)	171, 783, 1077, 1703
Bbv12I	GWGCWC	3 cut(s)	322, 1027, 2327
BccI	CCATC	4 cut(s)	867, 1412, 2043, 2125
BceAI	ACGGC	3 cut(s)	2389, 2482, 2707
BcgI	CGANNNNNNTGC	2 cut(s)	2371, 2405
BciT130I	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	222, 1264
BcoDI	GTCTC	1 cut(s)	1760
BfaI	CTAG	1 cut(s)	2133
BfmI	CTRYAG	1 cut(s)	1542
BfoI	RGCGCY	2 cut(s)	943, 1486
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	2 cut(s)	986, 1447
BlpI	GCTNAGC	2 cut(s)	547, 1026
Bme18I	GGWCC	2 cut(s)	233, 1778
BmeT110I	CYCGRG	1 cut(s)	2619
BmgT120I	GGNCC	4 cut(s)	223, 233, 1778, 2375
BmrI	ACTGGG	3 cut(s)	34, 94, 940
BmsI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
BmuI	ACTGGG	3 cut(s)	34, 94, 940
BpiI	GAAGAC	4 cut(s)	171, 783, 1077, 1703
BpmI	CTGGAG	2 cut(s)	1111, 1428
Bpu10I	CCTNAGC	1 cut(s)	2485
Bpu1102I	GCTNAGC	2 cut(s)	547, 1026
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	222, 1264
BsaAI	YACGTR	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	1483
BsaJI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BsaXI	ACNNNNNCTCC	6 cut(s)	622, 652, 756, 786, 2503, 2533
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
Bse21I	CCTNAGG	2 cut(s)	1188, 1521
Bse3DI	GCAATG	4 cut(s)	169, 307, 933, 2574
BseBI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BseDI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BseGI	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BseLI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
BseMI	GCAATG	4 cut(s)	169, 307, 933, 2574
BseMII	CTCAG	5 cut(s)	809, 1040, 1202, 1535, 2499
BseRI	GAGGAG	5 cut(s)	555, 691, 1316, 1871, 2021
BseSI	GKGCMC	2 cut(s)	40, 322
Bsh1236I	CGCG	2 cut(s)	252, 1327
Bsh1285I	CGRYCG	1 cut(s)	1248
BshFI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BshNI	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BsiEI	CGRYCG	1 cut(s)	1248
BsiHKAI	GWGCWC	3 cut(s)	322, 1027, 2327
BsiHKCI	CYCGRG	1 cut(s)	2619
BsiSI	CCGG	2 cut(s)	221, 1264
BslFI	GGGAC	2 cut(s)	1786, 2073
BslI	CCNNNNNNNGG	7 cut(s)	32, 290, 529, 1232, 1768, 2025, 2096
BsmAI	GTCTC	1 cut(s)	1760
BsmBI	CGTCTC	1 cut(s)	1760
BsmFI	GGGAC	2 cut(s)	1786, 2073
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BsoBI	CYCGRG	1 cut(s)	2619
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
Bsp1407I	TGTACA	1 cut(s)	2341
Bsp143I	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
Bsp1720I	GCTNAGC	2 cut(s)	547, 1026
Bsp19I	CCATGG	1 cut(s)	2544
BspACI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
BspANI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BspCNI	CTCAG	5 cut(s)	808, 1039, 1201, 1534, 2498
BspFNI	CGCG	2 cut(s)	252, 1327
BspMAI	CTGCAG	1 cut(s)	1546
BspPI	GGATC	5 cut(s)	275, 288, 1907, 2300, 2658
BspQI	GCTCTTC	1 cut(s)	1485
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	4 cut(s)	4, 35, 1482, 2219
BsrBI	CCGCTC	1 cut(s)	2684
BsrDI	GCAATG	4 cut(s)	169, 307, 933, 2574
BsrGI	TGTACA	1 cut(s)	2341
BssECI	CCNNGG	7 cut(s)	634, 1226, 1262, 1656, 1854, 2377, 2544
BssMI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
BssNI	GRCGYC	1 cut(s)	1483
BssT1I	CCWWGG	3 cut(s)	634, 1656, 2544
Bst2UI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
Bst4CI	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
Bst6I	CTCTTC	3 cut(s)	496, 1485, 1599
BstACI	GRCGYC	1 cut(s)	1483
BstAPI	GCANNNNNTGC	3 cut(s)	478, 616, 976
BstAUI	TGTACA	1 cut(s)	2341
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	683, 1223, 2014, 2148, 2541
BstDEI	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
BstDSI	CCRYGG	1 cut(s)	2544
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BstFNI	CGCG	2 cut(s)	252, 1327
BstH2I	RGCGCY	2 cut(s)	943, 1486
BstHHI	GCGC	3 cut(s)	942, 1485, 2152
BstKTI	GATC	8 cut(s)	283, 595, 718, 989, 1450, 1915, 2308, 2653
BstMAI	GTCTC	1 cut(s)	1760
BstMBI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
BstMCI	CGRYCG	1 cut(s)	1248
BstNI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
BstNSI	RCATGY	1 cut(s)	781
BstPI	GGTNACC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	1542
BstSLI	GKGCMC	2 cut(s)	40, 322
BstUI	CGCG	2 cut(s)	252, 1327
BstV2I	GAAGAC	4 cut(s)	171, 783, 1077, 1703
BstX2I	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
BstXI	CCANNNNNNTGG	1 cut(s)	1657
BstYI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
Bsu36I	CCTNAGG	2 cut(s)	1188, 1521
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
BtgI	CCRYGG	1 cut(s)	2544
BtsCI	GGATG	5 cut(s)	1198, 1423, 1580, 1994, 2117
BtsIMutI	CAGTG	3 cut(s)	322, 648, 1201
Cac8I	GCNNGC	5 cut(s)	683, 1223, 2014, 2148, 2541
CaiI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
CfoI	GCGC	3 cut(s)	942, 1485, 2152
Cfr13I	GGNCC	4 cut(s)	223, 233, 1778, 2375
Csp6I	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
CspCI	CAANNNNNGTGG	4 cut(s)	10, 45, 2696, 2731
CviQI	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
DdeI	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
DinI	GGCGCC	1 cut(s)	1484
DpnI	GATC	8 cut(s)	282, 594, 717, 988, 1449, 1914, 2307, 2652
DpnII	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
DraI	TTTAAA	1 cut(s)	1273
EaeI	YGGCCR	5 cut(s)	1162, 1348, 1647, 1794, 1894
Eam1104I	CTCTTC	3 cut(s)	496, 1485, 1599
EarI	CTCTTC	3 cut(s)	496, 1485, 1599
EciI	GGCGGA	1 cut(s)	2538
Ecl136II	GAGCTC	1 cut(s)	2325
Eco130I	CCWWGG	3 cut(s)	634, 1656, 2544
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	3 cut(s)	579, 2031, 2327
Eco32I	GATATC	1 cut(s)	1719
Eco47I	GGWCC	2 cut(s)	233, 1778
Eco53kI	GAGCTC	1 cut(s)	2325
Eco57I	CTGAAG	3 cut(s)	1089, 1472, 1697
Eco81I	CCTNAGG	2 cut(s)	1188, 1521
Eco88I	CYCGRG	1 cut(s)	2619
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	2325
EcoO65I	GGTNACC	1 cut(s)	407
EcoRI	GAATTC	4 cut(s)	70, 1900, 2041, 2050
EcoRII	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
EcoRV	GATATC	1 cut(s)	1719
EcoT14I	CCWWGG	3 cut(s)	634, 1656, 2544
EcoT22I	ATGCAT	3 cut(s)	828, 1579, 2637
EcoT38I	GRGCYC	3 cut(s)	579, 2031, 2327
EgeI	GGCGCC	1 cut(s)	1484
EheI	GGCGCC	1 cut(s)	1484
ErhI	CCWWGG	3 cut(s)	634, 1656, 2544
Esp3I	CGTCTC	1 cut(s)	1760
FalI	AAGNNNNNCTT	4 cut(s)	775, 807, 1279, 1311
FaqI	GGGAC	2 cut(s)	1786, 2073
FauI	CCCGC	1 cut(s)	2151
FauNDI	CATATG	2 cut(s)	199, 334
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	5 cut(s)	1205, 1430, 1567, 1981, 2104
FriOI	GRGCYC	3 cut(s)	579, 2031, 2327
FspBI	CTAG	1 cut(s)	2133
GlaI	GCGC	3 cut(s)	941, 1484, 2151
GsuI	CTGGAG	2 cut(s)	1111, 1428
HaeII	RGCGCY	2 cut(s)	943, 1486
HaeIII	GGCC	9 cut(s)	225, 1066, 1164, 1350, 1649, 1796, 1896, 1931, 2376
HapII	CCGG	2 cut(s)	221, 1264
HhaI	GCGC	3 cut(s)	942, 1485, 2152
Hin1I	GRCGYC	1 cut(s)	1483
Hin6I	GCGC	3 cut(s)	940, 1483, 2150
HinP1I	GCGC	3 cut(s)	940, 1483, 2150
HincII	GTYRAC	3 cut(s)	420, 1424, 2442
HindII	GTYRAC	3 cut(s)	420, 1424, 2442
HinfI	GANTC	4 cut(s)	275, 973, 2113, 2315
HpaII	CCGG	2 cut(s)	221, 1264
HphI	GGTGA	4 cut(s)	117, 2169, 2250, 2698
Hpy166II	GTNNAC	8 cut(s)	21, 320, 420, 1424, 2332, 2344, 2442, 2689
Hpy188III	TCNNGA	8 cut(s)	75, 1090, 1190, 1415, 1445, 1598, 2055, 2621
Hpy8I	GTNNAC	8 cut(s)	21, 320, 420, 1424, 2332, 2344, 2442, 2689
HpyAV	CCTTC	7 cut(s)	18, 63, 333, 1803, 2172, 2211, 2589
HpyCH4III	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
HpyCH4IV	ACGT	2 cut(s)	130, 365
HpyF3I	CTNAG	8 cut(s)	188, 547, 795, 1026, 1188, 1521, 2485, 2669
HpySE526I	ACGT	2 cut(s)	130, 365
Hsp92I	GRCGYC	1 cut(s)	1483
HspAI	GCGC	3 cut(s)	940, 1483, 2150
KasI	GGCGCC	1 cut(s)	1482
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
LguI	GCTCTTC	1 cut(s)	1485
LmnI	GCTCC	7 cut(s)	630, 678, 1303, 1858, 1987, 2034, 2681
LweI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
MaeI	CTAG	1 cut(s)	2133
MaeII	ACGT	2 cut(s)	130, 365
MaeIII	GTNAC	5 cut(s)	407, 846, 948, 2175, 2664
MalI	GATC	8 cut(s)	282, 594, 717, 988, 1449, 1914, 2307, 2652
MbiI	CCGCTC	1 cut(s)	2684
MboI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
MfeI	CAATTG	2 cut(s)	27, 581
MflI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
MhlI	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
MlsI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MluNI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
Mly113I	GGCGCC	1 cut(s)	1483
MmeI	TCCRAC	4 cut(s)	1341, 1608, 2385, 2581
Mox20I	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
Mph1103I	ATGCAT	3 cut(s)	828, 1579, 2637
MroXI	GAANNNNTTC	1 cut(s)	2578
MscI	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MseI	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Msp20I	TGGCCA	4 cut(s)	1350, 1649, 1796, 1896
MspA1I	CMGCKG	1 cut(s)	2231
MspI	CCGG	2 cut(s)	221, 1264
MunI	CAATTG	2 cut(s)	27, 581
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	8 cut(s)	237, 360, 1014, 1227, 1559, 1917, 1928, 2379
MvnI	CGCG	2 cut(s)	252, 1327
NarI	GGCGCC	1 cut(s)	1483
NciI	CCSGG	2 cut(s)	222, 1264
NcoI	CCATGG	1 cut(s)	2544
NdeI	CATATG	2 cut(s)	199, 334
NdeII	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
NmeAIII	GCCGAG	1 cut(s)	1787
NmuCI	GTSAC	1 cut(s)	2175
NsiI	ATGCAT	3 cut(s)	828, 1579, 2637
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	2619
PceI	AGGCCT	1 cut(s)	1066
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	1820
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	2578
PfeI	GAWTC	4 cut(s)	275, 973, 2113, 2315
PflFI	GACNNNGTC	1 cut(s)	2529
PflMI	CCANNNNNTGG	2 cut(s)	32, 290
PluTI	GGCGCC	1 cut(s)	1486
Ppu21I	YACGTR	1 cut(s)	131
PscI	ACATGT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	2327
Psp6I	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	8 cut(s)	235, 358, 1012, 1225, 1557, 1915, 1926, 2377
PspPI	GGNCC	4 cut(s)	223, 233, 1778, 2375
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	3 cut(s)	976, 1922, 2653
PsuI	RGATCY	5 cut(s)	280, 986, 1447, 1912, 2650
PsyI	GACNNNGTC	1 cut(s)	2529
PvuII	CAGCTG	1 cut(s)	2231
RsaI	GTAC	8 cut(s)	6, 133, 364, 505, 1119, 1294, 2248, 2343
RsaNI	GTAC	8 cut(s)	5, 132, 363, 504, 1118, 1293, 2247, 2342
SacI	GAGCTC	1 cut(s)	2327
SapI	GCTCTTC	1 cut(s)	1485
SaqAI	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Sau3AI	GATC	8 cut(s)	280, 592, 715, 986, 1447, 1912, 2305, 2650
Sau96I	GGNCC	4 cut(s)	223, 233, 1778, 2375
SduI	GDGCHC	6 cut(s)	40, 322, 579, 1027, 2031, 2327
SfaNI	GCATC	7 cut(s)	350, 742, 835, 1586, 2003, 2618, 2644
SfcI	CTRYAG	1 cut(s)	1542
SfoI	GGCGCC	1 cut(s)	1484
Sfr274I	CTCGAG	1 cut(s)	2619
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	2 cut(s)	233, 1778
SlaI	CTCGAG	1 cut(s)	2619
SmlI	CTYRAG	1 cut(s)	2619
SmoI	CTYRAG	1 cut(s)	2619
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	7 cut(s)	252, 1325, 1932, 1935, 2144, 2523, 2684
SspDI	GGCGCC	1 cut(s)	1482
SspI	AATATT	1 cut(s)	1112
SspMI	CTAG	1 cut(s)	2133
SstI	GAGCTC	1 cut(s)	2327
StuI	AGGCCT	1 cut(s)	1066
StyI	CCWWGG	3 cut(s)	634, 1656, 2544
TaaI	ACNGT	9 cut(s)	143, 417, 486, 503, 1205, 1249, 1644, 1838, 2087
TaiI	ACGT	2 cut(s)	133, 368
TaqI	TCGA	6 cut(s)	68, 538, 1504, 1639, 1807, 2620
TatI	WGTACW	2 cut(s)	2246, 2341
TauI	GCSGC	3 cut(s)	1327, 1934, 1937
TfiI	GAWTC	4 cut(s)	275, 973, 2113, 2315
Tru1I	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
Tru9I	TTAA	5 cut(s)	626, 1272, 1731, 2370, 2697
TscAI	CASTG	3 cut(s)	322, 648, 1208
TseFI	GTSAC	1 cut(s)	2175
Tsp45I	GTSAC	1 cut(s)	2175
TspGWI	ACGGA	2 cut(s)	1923, 2263
TspRI	CASTG	3 cut(s)	322, 648, 1208
Tth111I	GACNNNGTC	1 cut(s)	2529
Van91I	CCANNNNNTGG	2 cut(s)	32, 290
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	233, 1778
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2669
XhoI	CTCGAG	1 cut(s)	2619
XmnI	GAANNNNTTC	1 cut(s)	2578
XspI	CTAG	1 cut(s)	2133
Zsp2I	ATGCAT	3 cut(s)	828, 1579, 2637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.