Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

6341280 .. 6342932

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCCTCCAAGTCCAAAATCCTCTTCATCGGCGGCACCGGCTACATTGGAAAGTTCATCGTCGAGGCCAGCGCCAAGGCCGGGCACCCTACCTACGTTCTGGTTCGAGAAGCTTCCCTCTCCGACCCGGCAAAGTCCAAAGTCATCGAGAACTTCAAGGCTCTGGGCGTCATTTTCGTCCTGGGTGATCTGTACGATCACGGGAGCTTGGTGAAGGCGATCAAGCAAGTCGACGTGGTGATCTCGACGGTGGGGCATGGTCAGTTGGCTGATCAGGGAAAGATCATTGCGGCCATCAAAGAATCAGGCAATGTTAAGAGATTTTTCCCGTCGGAGTTTGGAAATGACGTCGATCGAAGTCACGCTGTTGAGCCTGCCAAATCGGCGTTTGAGACCAAGGCCAAGATTCGCAGAGCTGTGGAGGCTGAGGGTATTCCGTACACCTATGTGTCCTCCAACTTCTTTGCTGGTTACTTCTTGCCTACTTTGAACCAGCCCGGGGCTTCTTCTGCTCCTAGGGACAAAGTCGTCATTTTGGGCGACGGAAACCCTAAAGCAATTTTCAACAAGGAAGACGACATTGGGACGTACACAATTAGGGCGGTGGATGATCCAAGAACCTTGAACAAAGTCCTCTATATCAGGCCCCCTGCCAACACCATTTCATTCAATGAGCTTGTCTCTCTGTGGGAGAAGAAGATTGGCAAAACCCTCGAGAGAATCTATGTCCCGGAGGAGCAGCTGCTCAAAAACATCCAAGAGGCAGCGGTGCCGCTCAATGTGATACTATCAATTAGTCACGCAGTTTTTGTGAAGGGAGACCACACTAACTTTGAGATCGAGCCTTCGTTTGGCGTGGAAGCCACTGCTCTTTACCCTGATGTCAAATACACCACAGTCGACGAGTACCTCAACCAGTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

33.74

Weight (kDa)

6.62

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 304	3.4e-95	NmrA-like family
Epimerase	PF01370	7 - 87	3.7e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	11 - 152	1.1e-12	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AatII	GACGTC	1 cut(s)	351
AccB1I	GGYRCC	3 cut(s)	35, 84, 769
AccBSI	CCGCTC	1 cut(s)	775
AccI	GTMKAC	2 cut(s)	231, 900
AciI	CCGC	5 cut(s)	33, 290, 602, 767, 773
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	168, 348
AfaI	GTAC	4 cut(s)	194, 440, 590, 908
AfiI	CCNNNNNNNGG	3 cut(s)	81, 499, 851
AgsI	TTSAA	5 cut(s)	157, 490, 565, 625, 670
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	4 cut(s)	8, 40, 564, 596
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	113, 207, 416, 676, 742
AluI	AGCT	5 cut(s)	113, 207, 416, 676, 742
Alw26I	GTCTC	3 cut(s)	386, 685, 813
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	2 cut(s)	497, 713
AoxI	GGCC	6 cut(s)	3, 66, 78, 291, 399, 644
ApeKI	GCWGC	3 cut(s)	739, 742, 764
AspA2I	CCTAGG	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	645
AsuC2I	CCSGG	5 cut(s)	82, 128, 498, 499, 731
AsuHPI	GGTGA	3 cut(s)	197, 223, 250
AvaI	CYCGRG	2 cut(s)	497, 713
AvrII	CCTAGG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	3 cut(s)	35, 84, 769
BbsI	GAAGAC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	729, 751, 776
BccI	CCATC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	5 cut(s)	82, 128, 498, 499, 731
BcoDI	GTCTC	3 cut(s)	386, 685, 813
BfaI	CTAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	6 cut(s)	34, 291, 740, 743, 765, 773
BlnI	CCTAGG	1 cut(s)	515
BlsI	GCNGC	6 cut(s)	35, 292, 741, 744, 766, 774
Bme1390I	CCNGG	6 cut(s)	82, 128, 182, 498, 499, 731
BmeT110I	CYCGRG	2 cut(s)	497, 713
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	4 cut(s)	37, 86, 647, 771
BmrFI	CCNGG	6 cut(s)	82, 128, 182, 498, 499, 731
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	5 cut(s)	82, 128, 498, 499, 731
BsaHI	GRCGYC	2 cut(s)	168, 348
BsaI	GGTCTC	2 cut(s)	386, 813
BsaJI	CCNNGG	6 cut(s)	75, 181, 396, 497, 498, 515
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 499, 851
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	916
Bse3DI	GCAATG	2 cut(s)	285, 316
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	6 cut(s)	75, 181, 396, 497, 498, 515
BseGI	GGATG	2 cut(s)	613, 753
BseLI	CCNNNNNNNGG	3 cut(s)	81, 499, 851
BseMI	GCAATG	2 cut(s)	285, 316
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	916
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	3 cut(s)	729, 751, 776
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	6 cut(s)	5, 68, 80, 293, 401, 646
BshNI	GGYRCC	3 cut(s)	35, 84, 769
BsiEI	CGRYCG	1 cut(s)	355
BsiHKCI	CYCGRG	2 cut(s)	497, 713
BsiSI	CCGG	5 cut(s)	39, 81, 128, 498, 731
BslFI	GGGAC	3 cut(s)	533, 598, 713
BslI	CCNNNNNNNGG	3 cut(s)	81, 499, 851
BsmAI	GTCTC	3 cut(s)	386, 685, 813
BsmFI	GGGAC	3 cut(s)	533, 598, 713
BsnI	GGCC	6 cut(s)	5, 68, 80, 293, 401, 646
Bso31I	GGTCTC	2 cut(s)	386, 813
BsoBI	CYCGRG	2 cut(s)	497, 713
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
BspACI	CCGC	5 cut(s)	33, 290, 602, 767, 773
BspANI	GGCC	6 cut(s)	5, 68, 80, 293, 401, 646
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	37, 86, 647, 771
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	3 cut(s)	35, 84, 769
BspTNI	GGTCTC	2 cut(s)	386, 813
BsrBI	CCGCTC	1 cut(s)	775
BsrDI	GCAATG	2 cut(s)	285, 316
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	916
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	6 cut(s)	75, 181, 396, 497, 498, 515
BssMI	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
BssNI	GRCGYC	2 cut(s)	168, 348
BssT1I	CCWWGG	3 cut(s)	75, 396, 515
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	250, 898
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	168, 348
BstC8I	GCNNGC	2 cut(s)	70, 375
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	613, 753
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	9 cut(s)	190, 199, 222, 243, 274, 285, 355, 613, 840
BstMAI	GTCTC	3 cut(s)	386, 685, 813
BstMBI	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 383, 422, 509
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	6 cut(s)	80, 126, 180, 496, 497, 729
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	729, 751, 776
BstV2I	GAAGAC	1 cut(s)	579
BsuRI	GGCC	6 cut(s)	5, 68, 80, 293, 401, 646
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	613, 753
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	2 cut(s)	70, 375
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	645
Cfr9I	CCCGGG	1 cut(s)	497
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	4 cut(s)	193, 439, 589, 907
CviAII	CATG	1 cut(s)	257
CviQI	GTAC	4 cut(s)	193, 439, 589, 907
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	9 cut(s)	189, 198, 221, 242, 273, 284, 354, 612, 839
DpnII	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	75, 396, 515
Eco31I	GGTCTC	2 cut(s)	386, 813
Eco88I	CYCGRG	2 cut(s)	497, 713
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	3 cut(s)	75, 396, 515
ErhI	CCWWGG	3 cut(s)	75, 396, 515
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	258, 447, 639, 726
FaqI	GGGAC	3 cut(s)	533, 598, 713
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	2 cut(s)	231, 900
Fnu4HI	GCNGC	6 cut(s)	34, 291, 740, 743, 765, 773
FokI	GGATG	2 cut(s)	620, 740
Fsp4HI	GCNGC	6 cut(s)	34, 291, 740, 743, 765, 773
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	6 cut(s)	34, 291, 740, 743, 765, 773
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	6 cut(s)	5, 68, 80, 293, 401, 646
HapII	CCGG	5 cut(s)	39, 81, 128, 498, 731
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	2 cut(s)	168, 348
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	2 cut(s)	232, 901
HindII	GTYRAC	2 cut(s)	232, 901
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	302, 406, 720
HpaII	CCGG	5 cut(s)	39, 81, 128, 498, 731
HphI	GGTGA	3 cut(s)	197, 223, 250
Hpy166II	GTNNAC	4 cut(s)	232, 441, 591, 901
Hpy188I	TCNGA	3 cut(s)	124, 334, 926
Hpy188III	TCNNGA	4 cut(s)	107, 148, 244, 715
Hpy8I	GTNNAC	4 cut(s)	232, 441, 591, 901
Hpy99I	CGWCG	7 cut(s)	65, 236, 250, 334, 353, 545, 905
HpyAV	CCTTC	3 cut(s)	208, 808, 855
HpyCH4III	ACNGT	2 cut(s)	250, 898
HpyCH4IV	ACGT	4 cut(s)	96, 234, 348, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 383, 422, 509
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	4 cut(s)	96, 234, 348, 587
Hsp92I	GRCGYC	2 cut(s)	168, 348
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
LmnI	GCTCC	3 cut(s)	204, 517, 736
Lsp1109I	GCAGC	3 cut(s)	729, 751, 776
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	4 cut(s)	96, 234, 348, 587
MaeIII	GTNAC	3 cut(s)	359, 470, 797
MalI	GATC	9 cut(s)	189, 198, 221, 242, 273, 284, 354, 612, 839
MbiI	CCGCTC	1 cut(s)	775
MboI	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
MboII	GAAGA	5 cut(s)	16, 498, 584, 706, 709
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	558, 594, 792
MmeI	TCCRAC	3 cut(s)	147, 312, 480
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	742, 767
MspI	CCGG	5 cut(s)	39, 81, 128, 498, 731
MspR9I	CCNGG	6 cut(s)	82, 128, 182, 498, 499, 731
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	39, 383, 422, 509
NciI	CCSGG	5 cut(s)	82, 128, 498, 499, 731
NdeII	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	4 cut(s)	37, 86, 647, 771
NmuCI	GTSAC	2 cut(s)	359, 797
OliI	CACNNNNGTG	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	302, 406, 720
PflFI	GACNNNGTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	6 cut(s)	35, 292, 741, 744, 766, 774
Ple19I	CGATCG	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	37, 86, 647, 771
PspPI	GGNCC	1 cut(s)	645
PsyI	GACNNNGTC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	4 cut(s)	194, 440, 590, 908
RsaNI	GTAC	4 cut(s)	193, 439, 589, 907
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	2 cut(s)	230, 899
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	6 cut(s)	34, 291, 740, 743, 765, 773
Sau3AI	GATC	9 cut(s)	187, 196, 219, 240, 271, 282, 352, 610, 837
Sau96I	GGNCC	1 cut(s)	645
ScrFI	CCNGG	6 cut(s)	82, 128, 182, 498, 499, 731
SduI	GDGCHC	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	713
SmaI	CCCGGG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	558, 594, 792
SsiI	CCGC	5 cut(s)	33, 290, 602, 767, 773
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	6 cut(s)	80, 126, 180, 496, 497, 729
StyI	CCWWGG	3 cut(s)	75, 396, 515
TaaI	ACNGT	2 cut(s)	250, 898
TaiI	ACGT	4 cut(s)	99, 237, 351, 590
TasI	AATT	3 cut(s)	558, 594, 792
TauI	GCSGC	3 cut(s)	36, 293, 775
TfiI	GAWTC	3 cut(s)	302, 406, 720
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	2 cut(s)	359, 797
TseI	GCWGC	3 cut(s)	739, 742, 764
Tsp45I	GTSAC	2 cut(s)	359, 797
TspDTI	ATGAA	3 cut(s)	16, 46, 654
TspGWI	ACGGA	2 cut(s)	426, 558
TspMI	CCCGGG	1 cut(s)	497
TspRI	CASTG	1 cut(s)	871
Tth111I	GACNNNGTC	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	713
XmaI	CCCGGG	1 cut(s)	497
XmaJI	CCTAGG	1 cut(s)	515
XmiI	GTMKAC	2 cut(s)	231, 900
XspI	CTAG	1 cut(s)	516
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.