Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002576

Physical Location & Seq

Genomic Coordinates Reverse (-)

8789442 .. 8792842

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGAGAATCCCTGTTCCTTCAAGGATATATTTTTAATAAAGGCGCCAAAGAAATCTCCATTGGTGCTGCGGATGATTGTCGTGCTGTTTGCAATGGTCTGTGGTGTTTATATTTGCTCAATTTGTTTAAAGCAAGTCAGCACCCGCACCAAGTCCGGATTTTCAAGTGTTCAGGTGATTCAAAGGCCTTGTCCACATCCTGATGTTGAGCCGGAGGAATTTCGTTATATGCACTACCCAAAGCCCAATACTTATAGCAGGGCTGAGTGTGCGTGCAATCCTGTGCGATATTTCGCAATTTTGTCGATGCAGAGATCTGGGAGTGGGTGGTTTGAGACGCTATTGAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTGAAAGTTAGGAGAAGTAATATTTCAACAATCGTTGAGACTTTGGACAAAATTTATAATCTAGATTGGTTTAGTAGTGCCTCAAAGAATGAATGCACCGCTGCAGTTGGCTTGAAGTGGATGCTTAATCAGGGCTTGATGCAGCATCATGAAGAAATAGTAGAGTACTTCAATACACGAGGTGTTTCTGCTATCTTTCTCTTTCGGAGAAACCTGTTACGGAGGATGATCTCTGTGCTTGCAAACTTGTATGACCGAGATAAAAAGCTGCTGAATGGGACCCACAAGTCTCATGTTCATTCTCCTCACGAGGCAGAGATACTTGCAAAATACAAGCCTATAATCAATGCAACTTTGCTGATACCCAACCTGAAGCAAGTAGAGGATACAAGTACGAAAGCTTTGGAATATTTGAAGAGCACCCGGCATATTATCCTATTCTATGAGGATATCGTAAAAAACCGCACTAAATTGCTTGACGTTCAAGATTTTCTCAAGGTTCCAAAAAGGGATTTAAAGAGTCGCCAGGTGAAGATACACAAAGGTAACTTATCTAGTCAGATTGAGAATTGGGGTGATGTCCAAAAGACACTTGCGGGAACACAGTATGAAGGGTTCCTCAGTGTGGATTATCGAAGAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

345

Amino Acids

39.61

Weight (kDa)

9.46

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15730 AT2G15730 AT2G15730 AT4G34420
fragaria_vesca	FvH4_2g06650 FvH4_2g06650 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850 FvH4_2g34850
malus_domestica	MD00G1187600.v1.1 MD05G1076200.v1.1 MD10G1090800.v1.1
prunus_persica	Prupe.1G440400_v2.0.a1 Prupe.1G440400_v2.0.a1 Prupe.8G119400_v2.0.a1 Prupe.8G119400_v2.0.a1
pyrus_communis	pycom05g06960 pycom08g08720 pycom10g07430
rosa_chinensis	RchiOBHm_Chr6g0258691 RchiOBHm_Chr6g0307191
rosa_laevigata	RLG00000010728 RLG00000014589
rosa_multiflora	Rmu_sc0000031.1_g000004 Rmu_sc0018893.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161090 Rroxscaffold_7G00206020
rosa_rugosa	Rorug05G0582800 Rorug06G0357600
rosa_samantha	Rh6AG099300 Rh6AG468200 Rh6BG091000 Rh6BG432300 Rh6CG088300 Rh6CG483400 Rh6DG082600 Rh6DG470000
rosa_wichuraiana	Rw6G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	5 cut(s)	73, 148, 489, 853, 986
AcsI	RAATTY	2 cut(s)	221, 441
AcuI	CTGAAG	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	2 cut(s)	557, 784
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AgsI	TTSAA	9 cut(s)	25, 168, 185, 349, 417, 505, 562, 805, 875
AjnI	CCWGG	1 cut(s)	915
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	369, 658, 791
AluI	AGCT	3 cut(s)	369, 658, 791
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	3 cut(s)	332, 422, 684
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	70, 491, 532, 658
ApoI	RAATTY	2 cut(s)	221, 441
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	669
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	3 cut(s)	190, 931, 977
AvaII	GGWCC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	567, 698
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	4 cut(s)	57, 478, 544, 645
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	917
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	332, 422, 684
BfaI	CTAG	2 cut(s)	452, 945
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	769
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	4 cut(s)	71, 492, 533, 659
BlsI	GCNGC	4 cut(s)	72, 493, 534, 660
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	2 cut(s)	814, 917
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	5 cut(s)	48, 670, 671, 891, 1007
BmrFI	CCNGG	2 cut(s)	814, 917
BmsI	GCATC	4 cut(s)	300, 501, 519, 544
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	1 cut(s)	814
BsaHI	GRCGYC	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse3DI	GCAATG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	917
BseGI	GGATG	4 cut(s)	81, 199, 516, 621
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	258, 1024
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	4 cut(s)	57, 478, 544, 645
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	3 cut(s)	159, 215, 814
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	3 cut(s)	332, 422, 684
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	317, 618
BspACI	CCGC	5 cut(s)	73, 148, 489, 853, 986
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	259, 1023
BspEI	TCCGGA	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	5 cut(s)	48, 670, 671, 891, 1007
BspMAI	CTGCAG	1 cut(s)	496
BspQI	GCTCTTC	1 cut(s)	800
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	102
BssMI	GATC	2 cut(s)	317, 618
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	2 cut(s)	567, 698
Bst2BI	CACGAG	2 cut(s)	567, 698
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	1 cut(s)	996
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	277, 630
BstDEI	CTNAG	3 cut(s)	6, 267, 1010
BstF5I	GGATG	4 cut(s)	81, 199, 516, 621
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	320, 621
BstMAI	GTCTC	3 cut(s)	332, 422, 684
BstMBI	GATC	2 cut(s)	317, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	917
BstSCI	CCNGG	2 cut(s)	812, 915
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	4 cut(s)	57, 478, 544, 645
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	81, 199, 516, 621
BtsIMutI	CAGTG	1 cut(s)	1018
Cac8I	GCNNGC	2 cut(s)	277, 630
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	669
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	556, 783
CviAII	CATG	2 cut(s)	539, 683
CviQI	GTAC	2 cut(s)	556, 783
DdeI	CTNAG	3 cut(s)	6, 267, 1010
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	2 cut(s)	319, 620
DpnII	GATC	2 cut(s)	317, 618
DraI	TTTAAA	2 cut(s)	132, 906
DraIII	CACNNNGTG	1 cut(s)	572
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco147I	AGGCCT	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	841
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	2 cut(s)	542, 686
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	2 cut(s)	538, 682
FauI	CCCGC	2 cut(s)	155, 979
Fnu4HI	GCNGC	4 cut(s)	71, 492, 533, 659
FokI	GGATG	4 cut(s)	88, 186, 523, 628
Fsp4HI	GCNGC	4 cut(s)	71, 492, 533, 659
FspBI	CTAG	2 cut(s)	452, 945
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	4 cut(s)	71, 492, 533, 659
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	3 cut(s)	159, 215, 814
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	542, 686
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	3 cut(s)	10, 181, 910
HpaII	CCGG	3 cut(s)	159, 215, 814
HphI	GGTGA	3 cut(s)	190, 931, 977
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	597, 951
Hpy188III	TCNNGA	6 cut(s)	159, 203, 452, 539, 698, 875
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	31, 995
HpyCH4III	ACNGT	1 cut(s)	996
HpyCH4IV	ACGT	2 cut(s)	870, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	6, 267, 1010
HpySE526I	ACGT	2 cut(s)	870, 1031
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	542, 686
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
KflI	GGGWCCC	1 cut(s)	669
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	317, 618
LguI	GCTCTTC	1 cut(s)	800
Lsp1109I	GCAGC	4 cut(s)	57, 478, 544, 645
LweI	GCATC	4 cut(s)	300, 501, 519, 544
MaeI	CTAG	2 cut(s)	452, 945
MaeII	ACGT	2 cut(s)	870, 1031
MaeIII	GTNAC	2 cut(s)	606, 935
MalI	GATC	2 cut(s)	319, 620
MboI	GATC	2 cut(s)	317, 618
MboII	GAAGA	3 cut(s)	554, 817, 934
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	812
MluCI	AATT	6 cut(s)	123, 221, 300, 441, 860, 958
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	9 cut(s)	211, 481, 563, 606, 694, 705, 766, 829, 1019
MroI	TCCGGA	1 cut(s)	158
MseI	TTAA	4 cut(s)	38, 131, 516, 905
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	3 cut(s)	159, 215, 814
MspR9I	CCNGG	2 cut(s)	814, 917
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	1 cut(s)	272
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	814
NdeII	GATC	2 cut(s)	317, 618
NlaIII	CATG	2 cut(s)	542, 686
NlaIV	GGNNCC	5 cut(s)	48, 670, 671, 891, 1007
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	10, 181
PkrI	GCNGC	4 cut(s)	72, 493, 534, 660
PleI	GAGTC	1 cut(s)	918
PluTI	GGCGCC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	918
PpuMI	RGGWCCY	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	5 cut(s)	48, 670, 671, 891, 1007
PspPI	GGNCC	1 cut(s)	669
PspPPI	RGGWCCY	1 cut(s)	669
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	2 cut(s)	557, 784
RsaNI	GTAC	2 cut(s)	556, 783
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	800
SaqAI	TTAA	4 cut(s)	38, 131, 516, 905
SatI	GCNGC	4 cut(s)	71, 492, 533, 659
Sau3AI	GATC	2 cut(s)	317, 618
Sau96I	GGNCC	1 cut(s)	669
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	2 cut(s)	814, 917
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	4 cut(s)	300, 501, 519, 544
SfcI	CTRYAG	1 cut(s)	492
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	123, 221, 300, 441, 860, 958
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	5 cut(s)	73, 148, 489, 853, 986
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	2 cut(s)	412, 800
SspMI	CTAG	2 cut(s)	452, 945
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	812, 915
TaaI	ACNGT	1 cut(s)	996
TaiI	ACGT	2 cut(s)	873, 1034
TaqI	TCGA	2 cut(s)	308, 1024
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	6 cut(s)	123, 221, 300, 441, 860, 958
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	10, 181
Tru1I	TTAA	4 cut(s)	38, 131, 516, 905
Tru9I	TTAA	4 cut(s)	38, 131, 516, 905
TscAI	CASTG	1 cut(s)	1018
TseI	GCWGC	4 cut(s)	70, 491, 532, 658
TspDTI	ATGAA	4 cut(s)	495, 555, 677, 1014
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	1018
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	2 cut(s)	221, 441
XbaI	TCTAGA	1 cut(s)	451
XspI	CTAG	2 cut(s)	452, 945
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.