Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Forward (+)

9188594 .. 9189698

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGACTGCAACTGTAAGCGAATGGCGGCCATGGACAACTCCACCACAGCAGCCGTATCAAAGAGGAGAAAGATCACTGCTTCAACGCCGCCATTGCCTCCATTGCCGCCAAGTCCAATAATGCTTCAGCTCCTCGACTCCCCCCATTCATGCTCCAGCTTTTACTCCGATCACTCTCCGCCTCCCTCCTCTTGCTGCTCCACCAACGATCTCAACGACGTCGCCGCCGCCCGTAGCTCGCCGCTCCTAGATCTGCAGGCCAAGAGTTTCGAAACGGCATTCTCCAACTCGACCTCTATCACCAACAATAAATTCAGCAGGGAGACGACGCCGTCGAGCGAGCTGTCCCTGGACTTGAACGAAATGTCATCGCCGGCGCCGGCGGTGTCTCACCGGCGGAGAATCCCGGTCAGCAAATCGACTCCAAGTGAAGAGATCGAAGAGTTCTTCGCCGCCGCCGAGAAGTACGAGCATAAGCGCTTTACAGAGAAGTACAACTACGATATCGTCAATGACGTGCCTCTGGAGGGTCGGTACCAGTGGGTTCGTCTGAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

188

Amino Acids

20.78

Weight (kDa)

6.09

Isoelectric Point (pI)

83.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	143 - 185	3.7e-18	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AatII	GACGTC	1 cut(s)	225
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	379, 537
AccBSI	CCGCTC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	3 cut(s)	222, 332, 380
AfaI	GTAC	3 cut(s)	470, 497, 539
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	87, 361
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	4 cut(s)	133, 162, 240, 346
AluI	AGCT	4 cut(s)	133, 162, 240, 346
Alw26I	GTCTC	2 cut(s)	320, 396
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	2 cut(s)	30, 261
ApeKI	GCWGC	2 cut(s)	53, 198
ApoI	RAATTY	1 cut(s)	314
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	382, 483
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	295, 386
AsuII	TTCGAA	1 cut(s)	273
BanI	GGYRCC	2 cut(s)	379, 537
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbvI	GCAGC	2 cut(s)	65, 185
BceAI	ACGGC	3 cut(s)	41, 294, 319
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	320, 396
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	2 cut(s)	383, 484
BglII	AGATCT	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	353, 410
BmgBI	CACGTC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	381, 539
BmrFI	CCNGG	2 cut(s)	353, 410
BpmI	CTGGAG	2 cut(s)	142, 548
Bpu14I	TTCGAA	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	410
BsaHI	GRCGYC	3 cut(s)	222, 332, 380
BsaJI	CCNNGG	2 cut(s)	33, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	3 cut(s)	376, 382, 396
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	2 cut(s)	95, 104
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	33, 351
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	2 cut(s)	95, 104
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	3 cut(s)	82, 125, 181
BseXI	GCAGC	2 cut(s)	65, 185
BshFI	GGCC	2 cut(s)	32, 263
BshNI	GGYRCC	2 cut(s)	379, 537
BsiSI	CCGG	4 cut(s)	377, 383, 397, 410
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	320, 396
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	32, 263
Bsp119I	TTCGAA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	75, 172, 211, 253, 438
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	2 cut(s)	32, 263
BspLI	GGNNCC	2 cut(s)	381, 539
BspMAI	CTGCAG	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	379, 537
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	95, 104
BsrFI	RCCGGY	3 cut(s)	376, 382, 396
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	3 cut(s)	376, 382, 396
BssECI	CCNNGG	2 cut(s)	33, 351
BssMI	GATC	5 cut(s)	75, 172, 211, 253, 438
BssNI	GRCGYC	3 cut(s)	222, 332, 380
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	429, 438
BstACI	GRCGYC	3 cut(s)	222, 332, 380
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	5 cut(s)	242, 261, 344, 378, 384
BstDSI	CCRYGG	1 cut(s)	33
BstH2I	RGCGCY	2 cut(s)	383, 484
BstHHI	GCGC	2 cut(s)	382, 483
BstKTI	GATC	5 cut(s)	78, 175, 214, 256, 441
BstMAI	GTCTC	2 cut(s)	320, 396
BstMBI	GATC	5 cut(s)	75, 172, 211, 253, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 106
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	351, 408
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	65, 185
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	32, 263
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 548
Cac8I	GCNNGC	5 cut(s)	242, 261, 344, 378, 384
CfoI	GCGC	2 cut(s)	382, 483
Cfr10I	RCCGGY	3 cut(s)	376, 382, 396
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	469, 496, 538
CviAII	CATG	2 cut(s)	34, 153
CviJI	RGCY	7 cut(s)	32, 56, 133, 162, 240, 263, 346
CviKI_1	RGCY	7 cut(s)	32, 56, 133, 162, 240, 263, 346
CviQI	GTAC	3 cut(s)	469, 496, 538
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	5 cut(s)	77, 174, 213, 255, 440
DpnII	GATC	5 cut(s)	75, 172, 211, 253, 438
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	429, 438
EarI	CTCTTC	2 cut(s)	429, 438
EciI	GGCGGA	2 cut(s)	171, 415
Eco130I	CCWWGG	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	508
Eco47III	AGCGCT	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	33
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	37, 156
FaiI	YATR	4 cut(s)	35, 154, 477, 562
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	33, 152
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	381, 482
GsuI	CTGGAG	2 cut(s)	142, 548
HaeII	RGCGCY	2 cut(s)	383, 484
HaeIII	GGCC	2 cut(s)	32, 263
HapII	CCGG	4 cut(s)	377, 383, 397, 410
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	2 cut(s)	382, 483
Hin1I	GRCGYC	3 cut(s)	222, 332, 380
Hin1II	CATG	2 cut(s)	37, 156
Hin6I	GCGC	2 cut(s)	380, 481
HinP1I	GCGC	2 cut(s)	380, 481
HinfI	GANTC	3 cut(s)	140, 405, 424
HpaII	CCGG	4 cut(s)	377, 383, 397, 410
HphI	GGTGA	2 cut(s)	295, 386
Hpy188I	TCNGA	2 cut(s)	172, 555
Hpy188III	TCNNGA	1 cut(s)	527
Hpy99I	CGWCG	4 cut(s)	224, 227, 334, 340
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	2 cut(s)	222, 519
HpyCH4V	TGCA	2 cut(s)	12, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 106
HpySE526I	ACGT	2 cut(s)	222, 519
Hsp92I	GRCGYC	3 cut(s)	222, 332, 380
Hsp92II	CATG	2 cut(s)	37, 156
HspAI	GCGC	2 cut(s)	380, 481
KasI	GGCGCC	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	541
KroI	GCCGGC	2 cut(s)	376, 382
KroNI	GCCGGC	2 cut(s)	378, 384
Kzo9I	GATC	5 cut(s)	75, 172, 211, 253, 438
LmnI	GCTCC	4 cut(s)	138, 161, 206, 252
Lsp1109I	GCAGC	2 cut(s)	65, 185
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	222, 519
MalI	GATC	5 cut(s)	77, 174, 213, 255, 440
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	5 cut(s)	75, 172, 211, 253, 438
MboII	GAAGA	3 cut(s)	442, 446, 455
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	1 cut(s)	314
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	134, 418
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	60, 111, 146, 195, 199, 202, 307, 523, 534
MreI	CGCCGGCG	2 cut(s)	376, 382
MroNI	GCCGGC	2 cut(s)	376, 382
MspI	CCGG	4 cut(s)	377, 383, 397, 410
MspR9I	CCNGG	2 cut(s)	353, 410
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	97, 106
NaeI	GCCGGC	2 cut(s)	378, 384
NarI	GGCGCC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	75, 172, 211, 253, 438
NgoMIV	GCCGGC	2 cut(s)	376, 382
NlaIII	CATG	2 cut(s)	37, 156
NlaIV	GGNNCC	2 cut(s)	381, 539
NmeAIII	GCCGAG	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	4 cut(s)	216, 335, 459, 516
PctI	GAATGC	1 cut(s)	281
PdiI	GCCGGC	2 cut(s)	378, 384
PfeI	GAWTC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	134, 418
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	2 cut(s)	134, 418
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	381, 539
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	3 cut(s)	470, 497, 539
RsaNI	GTAC	3 cut(s)	469, 496, 538
Sau3AI	GATC	5 cut(s)	75, 172, 211, 253, 438
SchI	GAGTC	2 cut(s)	134, 418
ScrFI	CCNGG	2 cut(s)	353, 410
SetI	ASST	7 cut(s)	135, 164, 225, 242, 299, 348, 522
SfcI	CTRYAG	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	273
SgrAI	CRCCGGYG	3 cut(s)	376, 382, 396
Sse9I	AATT	1 cut(s)	314
SspDI	GGCGCC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	351, 408
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	2 cut(s)	225, 522
TaqI	TCGA	6 cut(s)	138, 273, 293, 338, 422, 441
TasI	AATT	1 cut(s)	314
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	8 cut(s)	32, 94, 112, 230, 233, 247, 458, 461
TfiI	GAWTC	1 cut(s)	405
TscAI	CASTG	2 cut(s)	85, 548
TseI	GCWGC	2 cut(s)	53, 198
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	85, 548
Tth111I	GACNNNGTC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	314
XspI	CTAG	1 cut(s)	251
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.