Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

12761965 .. 12763980

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCCGTTATCGGCGACTCTCTCTTCCCCCTCACTCTCTTATTTCCCCCAAGCACACCACCACCACCAACAACAACTCCATCTCCCTCACACTCTCAATCCATACCTCAAACCTAAAACACTGACACTTCAATTTCAATGCCCCCAAGCCTCCAGACGACCCCCAATTTACCCTCAGGGCGGCAGTGCCGATAGTCTCGCCGACGACCCCCGCAATTGGGGCCGTTCGATCAACTCCGAGGTCGATAGGCGCTATGATTTCGAAGACGACGATGACGACAACGAAGATGACGAGGACGATGAAGAAGAAGACCGGAGTTTGGATTTGTTGGTGAGATTTGTTCAGAATGTGTTCAAAAAGGTGTCCAGGCGAGCCAGGAGGGCCGTCCGATCGGTTCTCCCCGTCTCAATTCCTACCAATTTGGTAGTTTGCACCCTTGGAAGTCTAGTGTTCTTAAGCATCTTACTCATCCGTGGGATCTGGACTGGAGTAGCCTATTATCAAGATAACCGCAATCAGAAGTACCGGAATTTTGAAGACGACGACCGTCCATGGGCCGGCGCACAGCCTGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.1

Weight (kDa)

5.47

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	180, 211, 511
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	6 cut(s)	179, 216, 217, 319, 553, 557
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	131, 137, 355, 536
AjnI	CCWGG	2 cut(s)	365, 374
Alw26I	GTCTC	2 cut(s)	200, 409
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	3 cut(s)	220, 381, 555
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	252, 563
AspS9I	GGNCC	3 cut(s)	220, 381, 555
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	270, 315, 543
BccI	CCATC	1 cut(s)	87
BceAI	ACGGC	2 cut(s)	207, 368
BciT130I	CCWGG	2 cut(s)	367, 376
BcoDI	GTCTC	2 cut(s)	200, 409
BfaI	CTAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	253
BfrI	CTTAAG	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	367, 376
BmgT120I	GGNCC	3 cut(s)	220, 381, 555
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	367, 376
BmsI	GCATC	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	546
BpiI	GAAGAC	3 cut(s)	270, 315, 543
BpmI	CTGGAG	2 cut(s)	136, 507
Bpu14I	TTCGAA	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	237, 436, 472, 551
BsaWI	WCCGGW	2 cut(s)	312, 525
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 66, 90, 96
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 216, 217, 319, 553, 557
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	367, 376
BseDI	CCNNGG	4 cut(s)	237, 436, 472, 551
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	6 cut(s)	179, 216, 217, 319, 553, 557
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	490
Bsh1285I	CGRYCG	2 cut(s)	392, 547
BshFI	GGCC	3 cut(s)	222, 383, 557
BsiEI	CGRYCG	2 cut(s)	392, 547
BsiSI	CCGG	3 cut(s)	313, 526, 558
BslI	CCNNNNNNNGG	6 cut(s)	179, 216, 217, 319, 553, 557
BsmAI	GTCTC	2 cut(s)	200, 409
BsmBI	CGTCTC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	222, 383, 557
Bsp119I	TTCGAA	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	228, 389, 477
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	3 cut(s)	180, 211, 511
BspANI	GGCC	3 cut(s)	222, 383, 557
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	485
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	4 cut(s)	237, 436, 472, 551
BssMI	GATC	3 cut(s)	228, 389, 477
BssT1I	CCWWGG	2 cut(s)	436, 551
Bst2UI	CCWGG	2 cut(s)	367, 376
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	372, 559
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	2 cut(s)	472, 551
BstF5I	GGATG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 563
BstKTI	GATC	3 cut(s)	231, 392, 480
BstMAI	GTCTC	2 cut(s)	200, 409
BstMBI	GATC	3 cut(s)	228, 389, 477
BstMCI	CGRYCG	2 cut(s)	392, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 380
BstNI	CCWGG	2 cut(s)	367, 376
BstPAI	GACNNNNGTC	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	365, 374
BstV2I	GAAGAC	3 cut(s)	270, 315, 543
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	222, 383, 557
BtgI	CCRYGG	2 cut(s)	472, 551
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	119, 190
Cac8I	GCNNGC	2 cut(s)	372, 559
CfoI	GCGC	2 cut(s)	252, 563
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	220, 381, 555
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	1 cut(s)	552
CviJI	RGCY	7 cut(s)	149, 222, 374, 383, 494, 557, 568
CviKI_1	RGCY	7 cut(s)	149, 222, 374, 383, 494, 557, 568
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	230, 391, 479
DpnII	GATC	3 cut(s)	228, 389, 477
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	436, 551
Eco81I	CCTNAGG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	365, 374
EcoT14I	CCWWGG	2 cut(s)	436, 551
ErhI	CCWWGG	2 cut(s)	436, 551
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	1 cut(s)	555
FaiI	YATR	3 cut(s)	103, 255, 553
FatI	CATG	1 cut(s)	551
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	2 cut(s)	251, 562
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	2 cut(s)	136, 507
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	222, 383, 557
HapII	CCGG	3 cut(s)	313, 526, 558
HhaI	GCGC	2 cut(s)	252, 563
Hin1II	CATG	1 cut(s)	555
Hin6I	GCGC	2 cut(s)	250, 561
HinP1I	GCGC	2 cut(s)	250, 561
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	313, 526, 558
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	4 cut(s)	238, 345, 389, 519
Hpy188III	TCNNGA	3 cut(s)	153, 481, 503
Hpy99I	CGWCG	3 cut(s)	206, 272, 545
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 380
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	555
HspAI	GCGC	2 cut(s)	250, 561
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	228, 389, 477
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	3 cut(s)	230, 391, 479
MboI	GATC	3 cut(s)	228, 389, 477
MboII	GAAGA	7 cut(s)	15, 275, 296, 314, 317, 320, 548
MfeI	CAATTG	1 cut(s)	214
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	6 cut(s)	131, 165, 214, 408, 418, 529
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	40, 96, 116, 160, 183, 232, 286, 372
MroNI	GCCGGC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	3 cut(s)	313, 526, 558
MspR9I	CCNGG	2 cut(s)	367, 376
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	367, 376
MwoI	GCNNNNNNNGC	2 cut(s)	219, 380
NaeI	GCCGGC	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	228, 389, 477
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	1 cut(s)	555
NlaIV	GGNNCC	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	3 cut(s)	267, 273, 288
PdiI	GCCGGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	182
Ple19I	CGATCG	1 cut(s)	392
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	365, 374
PspGI	CCWGG	2 cut(s)	365, 374
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	3 cut(s)	220, 381, 555
PsuI	RGATCY	1 cut(s)	477
PvuI	CGATCG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	228, 389, 477
Sau96I	GGNCC	3 cut(s)	220, 381, 555
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	367, 376
SetI	ASST	5 cut(s)	108, 115, 243, 363, 578
SfaNI	GCATC	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	6 cut(s)	131, 165, 214, 408, 418, 529
SsiI	CCGC	3 cut(s)	180, 211, 511
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	365, 374
StyI	CCWWGG	2 cut(s)	436, 551
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	3 cut(s)	227, 243, 261
TasI	AATT	6 cut(s)	131, 165, 214, 408, 418, 529
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	126, 190
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	126, 190
Vha464I	CTTAAG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.