Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

15442795 .. 15445584

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGGACCCAACCACCTCACTCTCCAAAGCTTTGTTCAACAACACCAACAATCCCAAGCTCGCATGGCACCTCTTCAAGCGCATCATCTCCTCCCCCACCTCCTCCTCATCCTCCTCCGATCTCCCCCTCCGCTCCATCCCCGTCATTGCCCGTATCCTCATCGACTCCAAAATGCACCGCGAAATCGACAGCCTTCACCAGCTCCTCCTCCTCTCTCAACCCCTCGAAACCCTTCGCCCTTGCCTCGTTTCGCTCGTGCGGATCTTGGCCAAGTCGAATCTCCCCGATAAAGCCGTTGCCCATTTCAAATCCCTCCGCAGCCGCGTCCCTGATAAGCCCCCCTCTGTGTATTTGTATAATTTGCTTCTCGAGTCCTCTCTCAGGGAGAACAATGTAGATTTCGTCTTGTGGCTGTATAAGGATATGATCTTCTCCAGGATTAAGCCCGAAACTTATACTTTTAACCTTTTGATTTGGGCCTTGTGTGAATCGGATCGTTTGGATGATGCCCGCGAGGTGTTTGATAAAATGCGTGACAAGGGTTGTCAACCGAATGAGTACAGTGTTGGGATTTTGGTTCGTGGGTATTGTCGAGCTGGGCTTGCTGGCAGAGGTTTGGAGGTTTTGGATGAGGTGAGGAGTTGTAATGTTTTGCCGAATAAGGTTGTCTATAATACTTTGATTTCTAGCTTCTGTAAACAAGGAAGGACTGATGAGGCCGAGAAGTTGGTAGAGAGGATGAGAGAGGATGGATTGTTTCCAGATGCTGTTACTTTCAATTCTAGGATTTCAGCTCTCTGCAGTGCAGGGAAAATCCTTGAAGCTTCTAGAATATTTAGAGATATGCGTGTAGATGATCAAGGGTTGGGGCTGCCTCAACCTAATGTTGTAACATATAATTTGATGTTGCAAGGATTTTGCAAGGAAGGGATGCTAGAGGAAGCAGAGGCATTGCTCAAATCTATGGAAAAGGCTGGTGATTTTATTAATTTAGAGAGTTATAACATATGGTTGTTGGGTCTGGTCAGGAAAGGGAAGCTCTTAGAGGCACGATTGGTTCTTCAAGAGATGGTAGATAAAGGAATAGAACCCAGTATTTACTCATACAACATTGTGATAAATGGGTTATGCAAAAGTGGGATGCTCCGTGATGCAAGAACGGTGATGAGTCTAATGGAAAGAAACAATATTTCCCCTGATACGGTGACCTACAGTACTTTACTTCATGGTTTCTGCAGTAAAGGTAAGGTATTTGAGGCCAACAATATCCTGCATGAGATGATAACGAATAACTGCTTCCCAAATACTCATACTTGCAACACTTTACTGCATAGCCTATTGAAGGAGGGAAGGACATCAGAAGCAGAGGAGCTTCTGAAAAAGATGAATGAGAGAGGTTATGGCTTAGATACTGTGACCTGCAATATTGTGATTGATGGTCTGTGCAATGATGGGAAATTGGACAAAGCAATTGAAATTGTAAGCGGGATGTGGAGTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAACTCCTTTATTGGCCTGGTTGATGATAGTAACAATGGGAAGAAATGCAGCCCTGATTTGATCACGTATTCAACCATAATTGGTGGGTTATGCAAGGCTGGGAGGCTTGATGAAGCGAAGAAGAAGTTCATGGAGATGTTGGGGAAAAATTTGCCCCCTGATTCAGTGATTTATGATATGTTTATACGTAGTTTTTGTGAGCAAGGAAAGATATCATCTGCATTCCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAAACTTATAATTCACTAATCCTGGGATTAGGGAGTAAAAAGCAAATATTTGAAATATATGGACTGATGGATGAGATGAGAGAAAGAGGAGTCCCCCCTGATGTGCGCACTTATAATAATATGATGAAAAGTCTCTGTGAAGGAGAGAGAGTCAGAGATGCCACATCTCTTTTAGATGAAATGCTGCAGAAGGGCATATCCCCGAACATATCTACCTTCAGAATATTGATTGAAGCTTTCTGCAAGGGATGTGATTTTGGAGCCGCGCATGAGGTATTCGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCTTTGTATGGTTTGATGTTCAATCAGTTGCTCGCTGGAGGGGAAATATGGAATGCTAAAGAGCTATTTGAAGTTGCATTAGACAGGTGTTTTTATCTTGGAAATTTTAACTACAAAGATCTCATTGACAGACTTTGCAAGGATGAAAAGTTAGAGGATGCTAGCAGCATTCTTATCACGATGAAGAATAAAGGATATGGATTTGATACAGCATCATTCCTGCCTGTAATTGATGGCTTAGGTAAAAGGGGAAATAAGCACGGGGCGGATGAACTTGCAGAGAGAATGATGGAAATGGAAACAGAGGGTAGGGTAACAGATAAGGTTTACCGAAATGAGAGGGAAACAAGTGGTCGAAAACCAAATAACACCTGTAGAAGTGATTGGCAGACCATAGTGCACAGAGATGATGGCAGTGGAATAGCATTGAAAACCCTCAAGCGGGTACAGAAAGGCTGGGGTCGAGAGAGTCTAATTAATTTGCAGCCCCACACAAATGAATTTATCGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

875

Amino Acids

98.34

Weight (kDa)

6.92

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	2e-06	PPR repeat family
PPR_long	PF17177	119 - 254	6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	147 - 178	1.5e-07	PPR repeat
PPR_2	PF13041	149 - 198	2.1e-14	PPR repeat family
PPR	PF01535	152 - 182	1.6e-06	PPR repeat
PPR_3	PF13812	208 - 265	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	216 - 248	7e-13	PPR repeat
PPR_2	PF13041	219 - 267	9.4e-15	PPR repeat family
PPR	PF01535	222 - 252	2.4e-09	PPR repeat
PPR_1	PF12854	250 - 283	1.6e-08	PPR repeat
PPR_1	PF12854	293 - 323	3.9e-11	PPR repeat
PPR_2	PF13041	294 - 340	1.8e-11	PPR repeat family
PPR	PF01535	297 - 326	9.4e-09	PPR repeat
PPR_2	PF13041	332 - 378	2.3e-12	PPR repeat family
PPR_3	PF13812	353 - 409	2.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	360 - 393	7.3e-09	PPR repeat
PPR	PF01535	367 - 397	3.2e-06	PPR repeat
PPR_2	PF13041	367 - 412	2.6e-15	PPR repeat family
TPR_24	PF23276	385 - 493	7.4e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	391 - 444	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	396 - 427	6.1e-11	PPR repeat
PPR_2	PF13041	400 - 446	5.7e-12	PPR repeat family
PPR	PF01535	402 - 432	3.5e-06	PPR repeat
PPR_2	PF13041	434 - 483	2.5e-13	PPR repeat family
PPR_1	PF12854	466 - 497	6.2e-07	PPR repeat
PPR_1	PF12854	524 - 555	1.8e-12	PPR repeat
PPR_2	PF13041	527 - 567	8.2e-09	PPR repeat family
PPR	PF01535	530 - 559	1.2e-06	PPR repeat
PPR_3	PF13812	554 - 606	1.8e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	555 - 653	7.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	558 - 591	2.8e-07	PPR repeat
PPR_2	PF13041	562 - 609	7e-12	PPR repeat family
PPR_long	PF17177	579 - 680	4.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	598 - 645	2.4e-12	PPR repeat family
PPR_3	PF13812	621 - 679	3.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	628 - 660	3.7e-08	PPR repeat
PPR_2	PF13041	632 - 681	2.6e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1002, 1806, 1911
Acc16I	TGCGCA	1 cut(s)	1904
Acc36I	ACCTGC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	4 cut(s)	180, 324, 513, 2063
AclWI	GGATC	2 cut(s)	269, 501
AcoI	YGGCCR	2 cut(s)	267, 2098
AcsI	RAATTY	3 cut(s)	1675, 2212, 2609
AcuI	CTGAAG	1 cut(s)	1999
AfaI	GTAC	3 cut(s)	560, 1216, 2556
AfiI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
AjnI	CCWGG	3 cut(s)	434, 1542, 1818
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Alw21I	GWGCWC	1 cut(s)	2511
Alw26I	GTCTC	1 cut(s)	1934
Alw44I	GTGCAC	1 cut(s)	2507
AlwI	GGATC	2 cut(s)	269, 501
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	6 cut(s)	267, 477, 717, 1257, 1540, 2098
ApaLI	GTGCAC	1 cut(s)	2507
ApeKI	GCWGC	6 cut(s)	318, 871, 1575, 1981, 2274, 2593
ApoI	RAATTY	3 cut(s)	1675, 2212, 2609
AseI	ATTAAT	2 cut(s)	987, 2586
Asp700I	GAANNNNTTC	2 cut(s)	231, 1652
AspLEI	GCGC	3 cut(s)	81, 1905, 2065
AspS9I	GGNCC	2 cut(s)	4, 477
AsuC2I	CCSGG	1 cut(s)	1754
AsuHPI	GGTGA	5 cut(s)	188, 646, 989, 1174, 1216
AsuNHI	GCTAGC	1 cut(s)	2270
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	2511
BalI	TGGCCA	2 cut(s)	269, 2100
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	2511
BbvI	GCAGC	6 cut(s)	330, 858, 1587, 1968, 2286, 2605
BccI	CCATC	9 cut(s)	143, 743, 1063, 1430, 1445, 1858, 2336, 2392, 2513
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	3 cut(s)	436, 1544, 1820
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	2 cut(s)	856, 1587
BcnI	CCSGG	1 cut(s)	1754
BcoDI	GTCTC	1 cut(s)	1934
BfaI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
BfmI	CTRYAG	5 cut(s)	799, 1210, 1234, 1982, 2482
BfuAI	ACCTGC	1 cut(s)	1427
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	2227
BisI	GCNGC	9 cut(s)	319, 322, 872, 1509, 1576, 1982, 2061, 2275, 2594
BlsI	GCNGC	9 cut(s)	320, 323, 873, 1510, 1577, 1983, 2062, 2276, 2595
BmcAI	AGTACT	1 cut(s)	1216
Bme1390I	CCNGG	4 cut(s)	436, 1544, 1754, 1820
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	4, 477
BmiI	GGNNCC	3 cut(s)	6, 68, 2059
BmrFI	CCNGG	4 cut(s)	436, 1544, 1754, 1820
BmrI	ACTGGG	1 cut(s)	1086
BmsI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
BmtI	GCTAGC	1 cut(s)	2274
BmuI	ACTGGG	1 cut(s)	1086
BpmI	CTGGAG	2 cut(s)	418, 2166
Bpu10I	CCTNAGC	1 cut(s)	2347
BpuEI	CTTGAG	1 cut(s)	2531
BpuMI	CCSGG	1 cut(s)	1754
Bsa29I	ATCGAT	1 cut(s)	2616
BsaAI	YACGTR	2 cut(s)	1593, 1715
BsaJI	CCNNGG	1 cut(s)	1819
BsaXI	ACNNNNNCTCC	2 cut(s)	1932, 1962
Bsc4I	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
Bse1I	ACTGG	1 cut(s)	1092
Bse3DI	GCAATG	4 cut(s)	144, 950, 1453, 2079
BseBI	CCWGG	3 cut(s)	436, 1544, 1820
BseCI	ATCGAT	1 cut(s)	2616
BseDI	CCNNGG	1 cut(s)	1819
BseLI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
BseMI	GCAATG	4 cut(s)	144, 950, 1453, 2079
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	1092
BseSI	GKGCMC	1 cut(s)	2511
BseXI	GCAGC	6 cut(s)	330, 858, 1587, 1968, 2286, 2605
BseYI	CCCAGC	3 cut(s)	596, 1625, 2565
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	4 cut(s)	180, 324, 513, 2063
BshFI	GGCC	6 cut(s)	269, 479, 719, 1259, 1542, 2100
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	2616
BsiHKAI	GWGCWC	1 cut(s)	2511
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	1753
BslFI	GGGAC	2 cut(s)	311, 1874
BslI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
BsmAI	GTCTC	1 cut(s)	1934
BsmFI	GGGAC	2 cut(s)	311, 1874
BsmI	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
BsnI	GGCC	6 cut(s)	269, 479, 719, 1259, 1542, 2100
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	2511
Bsp143I	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
BspANI	GGCC	6 cut(s)	269, 479, 719, 1259, 1542, 2100
BspCNI	CTCAG	1 cut(s)	393
BspDI	ATCGAT	1 cut(s)	2616
BspFNI	CGCG	4 cut(s)	180, 324, 513, 2063
BspLI	GGNNCC	3 cut(s)	6, 68, 2059
BspMAI	CTGCAG	3 cut(s)	803, 1238, 1986
BspMI	ACCTGC	1 cut(s)	1427
BspOI	GCTAGC	1 cut(s)	2274
BspPI	GGATC	2 cut(s)	269, 501
BspT107I	GGYRCC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	4 cut(s)	144, 950, 1453, 2079
BsrI	ACTGG	1 cut(s)	1092
BssECI	CCNNGG	1 cut(s)	1819
BssMI	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	3 cut(s)	436, 1544, 1820
Bst4CI	ACNGT	5 cut(s)	563, 1162, 1204, 1214, 1414
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	2 cut(s)	1593, 1715
BstC8I	GCNNGC	6 cut(s)	60, 511, 603, 607, 2142, 2272
BstDEI	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
BstEII	GGTNACC	1 cut(s)	1204
BstENI	CCTNNNNNAGG	2 cut(s)	379, 1340
BstFNI	CGCG	4 cut(s)	180, 324, 513, 2063
BstHHI	GCGC	3 cut(s)	81, 1905, 2065
BstKTI	GATC	7 cut(s)	121, 264, 429, 496, 859, 1590, 2230
BstMAI	GTCTC	1 cut(s)	1934
BstMBI	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 602, 1791
BstNI	CCWGG	3 cut(s)	436, 1544, 1820
BstPI	GGTNACC	1 cut(s)	1204
BstSCI	CCNGG	4 cut(s)	434, 1542, 1752, 1818
BstSFI	CTRYAG	5 cut(s)	799, 1210, 1234, 1982, 2482
BstSLI	GKGCMC	1 cut(s)	2511
BstSNI	TACGTA	1 cut(s)	1715
BstUI	CGCG	4 cut(s)	180, 324, 513, 2063
BstV1I	GCAGC	6 cut(s)	330, 858, 1587, 1968, 2286, 2605
BstX2I	RGATCY	2 cut(s)	261, 2227
BstYI	RGATCY	2 cut(s)	261, 2227
Bsu15I	ATCGAT	1 cut(s)	2616
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	6 cut(s)	269, 479, 719, 1259, 1542, 2100
BsuTUI	ATCGAT	1 cut(s)	2616
BtsI	GCAGTG	2 cut(s)	808, 2530
BtsIMutI	CAGTG	4 cut(s)	568, 808, 1698, 2530
BveI	ACCTGC	1 cut(s)	1427
Cac8I	GCNNGC	6 cut(s)	60, 511, 603, 607, 2142, 2272
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	3 cut(s)	81, 1905, 2065
Cfr13I	GGNCC	2 cut(s)	4, 477
ClaI	ATCGAT	1 cut(s)	2616
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	559, 1215, 2555
CviAII	CATG	7 cut(s)	63, 1226, 1274, 1499, 1657, 1768, 2066
CviQI	GTAC	3 cut(s)	559, 1215, 2555
DdeI	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
DpnI	GATC	7 cut(s)	120, 263, 428, 495, 858, 1589, 2229
DpnII	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
EaeI	YGGCCR	2 cut(s)	267, 2098
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	2390
Eco105I	TACGTA	1 cut(s)	1715
Eco32I	GATATC	1 cut(s)	1740
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	1999
Eco88I	CYCGRG	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	1204
EcoNI	CCTNNNNNAGG	2 cut(s)	379, 1340
EcoO65I	GGTNACC	1 cut(s)	1204
EcoRII	CCWGG	3 cut(s)	434, 1542, 1818
EcoRV	GATATC	1 cut(s)	1740
FaeI	CATG	7 cut(s)	66, 1229, 1277, 1502, 1660, 1771, 2069
FaqI	GGGAC	2 cut(s)	311, 1874
FatI	CATG	7 cut(s)	62, 1225, 1273, 1498, 1656, 1767, 2065
FauI	CCCGC	3 cut(s)	518, 1478, 2544
FauNDI	CATATG	1 cut(s)	1007
FbaI	TGATCA	2 cut(s)	856, 1587
Fnu4HI	GCNGC	9 cut(s)	319, 322, 872, 1509, 1576, 1982, 2061, 2275, 2594
Fsp4HI	GCNGC	9 cut(s)	319, 322, 872, 1509, 1576, 1982, 2061, 2275, 2594
FspAI	RTGCGCAY	1 cut(s)	1904
FspBI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
FspI	TGCGCA	1 cut(s)	1904
GlaI	GCGC	3 cut(s)	80, 1904, 2064
GluI	GCNGC	9 cut(s)	319, 322, 872, 1509, 1576, 1982, 2061, 2275, 2594
GsaI	CCCAGC	3 cut(s)	600, 1629, 2569
GsuI	CTGGAG	2 cut(s)	418, 2166
HaeIII	GGCC	6 cut(s)	269, 479, 719, 1259, 1542, 2100
HapII	CCGG	1 cut(s)	1753
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	3 cut(s)	81, 1905, 2065
Hin1II	CATG	7 cut(s)	66, 1229, 1277, 1502, 1660, 1771, 2069
Hin6I	GCGC	3 cut(s)	79, 1903, 2063
HinP1I	GCGC	3 cut(s)	79, 1903, 2063
HincII	GTYRAC	1 cut(s)	548
HindII	GTYRAC	1 cut(s)	548
HindIII	AAGCTT	4 cut(s)	27, 822, 2031, 2109
HpaII	CCGG	1 cut(s)	1753
HphI	GGTGA	5 cut(s)	188, 646, 989, 1174, 1216
Hpy166II	GTNNAC	4 cut(s)	548, 698, 2437, 2509
Hpy188I	TCNGA	6 cut(s)	118, 493, 1360, 1377, 1952, 2018
Hpy188III	TCNNGA	7 cut(s)	368, 761, 828, 1027, 1064, 2287, 2573
Hpy8I	GTNNAC	4 cut(s)	548, 698, 2437, 2509
HpyCH4III	ACNGT	5 cut(s)	563, 1162, 1204, 1214, 1414
HpyCH4IV	ACGT	2 cut(s)	1592, 1714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 602, 1791
HpyF3I	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
HpySE526I	ACGT	2 cut(s)	1592, 1714
Hsp92II	CATG	7 cut(s)	66, 1229, 1277, 1502, 1660, 1771, 2069
HspAI	GCGC	3 cut(s)	79, 1903, 2063
Ksp22I	TGATCA	2 cut(s)	856, 1587
Kzo9I	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
LmnI	GCTCC	5 cut(s)	137, 207, 1149, 1369, 2057
Lsp1109I	GCAGC	6 cut(s)	330, 858, 1587, 1968, 2286, 2605
LweI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
MaeI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
MaeII	ACGT	2 cut(s)	1592, 1714
MaeIII	GTNAC	7 cut(s)	533, 769, 889, 1204, 1414, 1556, 2422
MalI	GATC	7 cut(s)	120, 263, 428, 495, 858, 1589, 2229
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
MboII	GAAGA	8 cut(s)	64, 421, 1052, 1579, 1657, 1660, 1786, 2305
MfeI	CAATTG	1 cut(s)	1470
MflI	RGATCY	2 cut(s)	261, 2227
MhlI	GDGCHC	1 cut(s)	2511
MlsI	TGGCCA	2 cut(s)	269, 2100
MluNI	TGGCCA	2 cut(s)	269, 2100
MlyI	GAGTC	7 cut(s)	158, 380, 1177, 1504, 1896, 1956, 2587
Mox20I	TGGCCA	2 cut(s)	269, 2100
MroXI	GAANNNNTTC	2 cut(s)	231, 1652
MscI	TGGCCA	2 cut(s)	269, 2100
MseI	TTAA	6 cut(s)	441, 462, 987, 2087, 2217, 2586
MslI	CAYNNNNRTG	4 cut(s)	1503, 1661, 2514, 2604
Msp20I	TGGCCA	2 cut(s)	269, 2100
MspI	CCGG	1 cut(s)	1753
MspR9I	CCNGG	4 cut(s)	436, 1544, 1754, 1820
MunI	CAATTG	1 cut(s)	1470
Mva1269I	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
MvaI	CCWGG	3 cut(s)	436, 1544, 1820
MvnI	CGCG	4 cut(s)	180, 324, 513, 2063
MwoI	GCNNNNNNNGC	3 cut(s)	64, 602, 1791
NciI	CCSGG	1 cut(s)	1754
NdeI	CATATG	1 cut(s)	1007
NdeII	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
NheI	GCTAGC	1 cut(s)	2270
NlaIII	CATG	7 cut(s)	66, 1229, 1277, 1502, 1660, 1771, 2069
NlaIV	GGNNCC	3 cut(s)	6, 68, 2059
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	3 cut(s)	533, 1204, 1414
NsbI	TGCGCA	1 cut(s)	1904
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
PdmI	GAANNNNTTC	2 cut(s)	231, 1652
PfeI	GAWTC	3 cut(s)	277, 488, 1688
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	9 cut(s)	320, 323, 873, 1510, 1577, 1983, 2062, 2276, 2595
PleI	GAGTC	7 cut(s)	158, 379, 1176, 1503, 1895, 1955, 2586
PpsI	GAGTC	7 cut(s)	158, 379, 1176, 1503, 1895, 1955, 2586
Ppu21I	YACGTR	2 cut(s)	1593, 1715
PshBI	ATTAAT	2 cut(s)	987, 2586
PsiI	TTATAA	3 cut(s)	1002, 1806, 1911
Psp6I	CCWGG	3 cut(s)	434, 1542, 1818
PspEI	GGTNACC	1 cut(s)	1204
PspFI	CCCAGC	3 cut(s)	596, 1625, 2565
PspGI	CCWGG	3 cut(s)	434, 1542, 1818
PspN4I	GGNNCC	3 cut(s)	6, 68, 2059
PspPI	GGNCC	2 cut(s)	4, 477
PstI	CTGCAG	3 cut(s)	803, 1238, 1986
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	261, 2227
RsaI	GTAC	3 cut(s)	560, 1216, 2556
RsaNI	GTAC	3 cut(s)	559, 1215, 2555
RseI	CAYNNNNRTG	4 cut(s)	1503, 1661, 2514, 2604
SaqAI	TTAA	6 cut(s)	441, 462, 987, 2087, 2217, 2586
SatI	GCNGC	9 cut(s)	319, 322, 872, 1509, 1576, 1982, 2061, 2275, 2594
Sau3AI	GATC	7 cut(s)	118, 261, 426, 493, 856, 1587, 2227
Sau96I	GGNCC	2 cut(s)	4, 477
ScaI	AGTACT	1 cut(s)	1216
SchI	GAGTC	7 cut(s)	158, 380, 1177, 1504, 1896, 1956, 2587
ScrFI	CCNGG	4 cut(s)	436, 1544, 1754, 1820
SduI	GDGCHC	1 cut(s)	2511
SfaNI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
SfcI	CTRYAG	5 cut(s)	799, 1210, 1234, 1982, 2482
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	4 cut(s)	1503, 1661, 2514, 2604
SmlI	CTYRAG	2 cut(s)	368, 2546
SmoI	CTYRAG	2 cut(s)	368, 2546
SnaBI	TACGTA	1 cut(s)	1715
SspI	AATATT	5 cut(s)	834, 1189, 1426, 1845, 2022
SspMI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
StyD4I	CCNGG	4 cut(s)	434, 1542, 1752, 1818
TaaI	ACNGT	5 cut(s)	563, 1162, 1204, 1214, 1414
TaiI	ACGT	2 cut(s)	1595, 1717
TatI	WGTACW	2 cut(s)	558, 1214
TauI	GCSGC	3 cut(s)	324, 1511, 2063
TfiI	GAWTC	3 cut(s)	277, 488, 1688
Tru1I	TTAA	6 cut(s)	441, 462, 987, 2087, 2217, 2586
Tru9I	TTAA	6 cut(s)	441, 462, 987, 2087, 2217, 2586
TscAI	CASTG	4 cut(s)	568, 808, 1698, 2530
TseFI	GTSAC	3 cut(s)	533, 1204, 1414
TseI	GCWGC	6 cut(s)	318, 871, 1575, 1981, 2274, 2593
Tsp45I	GTSAC	3 cut(s)	533, 1204, 1414
TspGWI	ACGGA	1 cut(s)	1136
TspRI	CASTG	4 cut(s)	568, 808, 1698, 2530
VneI	GTGCAC	1 cut(s)	2507
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	2 cut(s)	987, 2586
XagI	CCTNNNNNAGG	2 cut(s)	379, 1340
XapI	RAATTY	3 cut(s)	1675, 2212, 2609
XbaI	TCTAGA	1 cut(s)	827
XhoI	CTCGAG	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	231, 1652
XspI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
ZrmI	AGTACT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.