Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Forward (+)

15799751 .. 15800402

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCATTTTCGAAGATTTCCCTTCTCGCCTTCCTTGTGCCTCTCTTTCTCGGTTCTGCTCTGGCTCACGAGTTCTCGATCGTGGGATATTCTCCCGAGGACTTGACCTGCATGGACAAGTTCATCATGCTTTTCGAGAAGTGGATATCGAAGCATGGCAAGATTTATGAAAGCATGGAGGAGAAGCTGCATAGGTTTGAGATTTTCAGAGACAACGTGAAGCACATTGATGAGAGGAATAAGAACCTCGATGTCGATAGCTACTGGCTTGGTGTGAATGAGTTTGCTGACTTGAGCCATGAGGAGTTCAAGAGCAAGTACTTGGGTCTCAAGGCTGAGTTCCCCAGAAGGAGAGAGTCCACCGGAGATTTCAATTACCGTGATTTTGATGTAGAGGCATTGCCCAAATCCGTGGACTGGCGAAAGAAAGGAGCTGTAACCTCCATCAAGAACCAAGGTTCATGTGGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

158

Amino Acids

18.33

Weight (kDa)

6.52

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	116, 459
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	310, 373
AluBI	AGCT	3 cut(s)	187, 261, 434
AluI	AGCT	3 cut(s)	187, 261, 434
Alw26I	GTCTC	2 cut(s)	204, 332
Ama87I	CYCGRG	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	95
BauI	CACGAG	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	204, 332
BfuAI	ACCTGC	2 cut(s)	116, 459
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	313, 314
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	96, 411, 454
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	269, 422
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	96, 411, 454
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	269, 422
BseRI	GAGGAG	2 cut(s)	194, 317
BseXI	GCAGC	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	2 cut(s)	204, 332
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	328
BspMI	ACCTGC	2 cut(s)	116, 459
BspT104I	TTCGAA	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	269, 422
BssECI	CCNNGG	3 cut(s)	96, 411, 454
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	411
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	204, 332
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	411
BveI	ACCTGC	2 cut(s)	116, 459
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	6 cut(s)	112, 127, 155, 175, 299, 462
CviJI	RGCY	7 cut(s)	65, 187, 261, 268, 297, 335, 434
CviKI_1	RGCY	7 cut(s)	65, 187, 261, 268, 297, 335, 434
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	6 cut(s)	115, 130, 158, 178, 302, 465
FaiI	YATR	8 cut(s)	113, 128, 156, 168, 176, 192, 300, 463
FatI	CATG	6 cut(s)	111, 126, 154, 174, 298, 461
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	6 cut(s)	115, 130, 158, 178, 302, 465
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	360, 415
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	6 cut(s)	68, 76, 95, 136, 310, 448
Hpy8I	GTNNAC	2 cut(s)	360, 415
HpyAV	CCTTC	3 cut(s)	32, 40, 342
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	111, 190
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	115, 130, 158, 178, 302, 465
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	7 cut(s)	47, 121, 250, 358, 376, 403, 454
Lsp1109I	GCAGC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	8 cut(s)	51, 91, 172, 228, 257, 295, 388, 451
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	363
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	6 cut(s)	115, 130, 158, 178, 302, 465
NspV	TTCGAA	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	189
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	292, 329
SmoI	CTYRAG	2 cut(s)	292, 329
Sse9I	AATT	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	6 cut(s)	11, 77, 135, 149, 249, 255
TasI	AATT	1 cut(s)	373
TatI	WGTACW	1 cut(s)	318
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	112, 183, 450
TspGWI	ACGGA	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.