Rh5BG077100

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014719
Physical Location & Seq
Forward (+)
6470103 .. 6470873
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG077100.1

Sequence Viewer

Length: 498 bp
ATGGGTCTGTTTTCTTCTTTCACCACATACAAAACAGAAGAGGATGGAAGCTTAGATGAAGAAGAAGAGCAAAATGGAGGGCCCATTTTGGGAGGGATTTTCAGGCGAGAAATTGGCAAGCTCCGGCAGGGATTTGGTGAGAAAAGAGAGAGTGATTCAGAAGACATAGAAGCTGTTGTGGACCAAAAGAAGACTGTGAATCAGAGCAAGAAGAGAACTGGGTGGATGATTACGCTCCGGATAACACGTTGGAAATGCCCAAAATCGATCACCAGAAGCTCAAACTCATCTTTTAGGTACAGCAGTATTAAATACGAGGATCTTCCCAAAAACTGGGACTGGAGGACAAAAGGAGCTGCCACTAAGGTTAAGCACCAAGGATCAGAGTGTGGTTGTTATTGGGCTTTTTCAACAGCAGCGGCAGTGGAAGCGCTTCCCCCAACCTTTAAAAATCTGACACGTGGACCTGTCCGTGCAACAACTTATAGAATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

165

Amino Acids

18.79

Weight (kDa)

9.38

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 108 - 144 1.1e-08 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 1 cut(s) 419
AclWI GGATC 2 cut(s) 327, 388
AcvI CACGTG 1 cut(s) 461
AfaI GTAC 1 cut(s) 299
AfeI AGCGCT 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 89, 333
AflIII ACRYGT 2 cut(s) 245, 458
AgsI TTSAA 1 cut(s) 411
AluBI AGCT 5 cut(s) 51, 121, 173, 279, 356
AluI AGCT 5 cut(s) 51, 121, 173, 279, 356
AlwI GGATC 2 cut(s) 327, 388
Aor13HI TCCGGA 1 cut(s) 237
Aor51HI AGCGCT 1 cut(s) 432
AoxI GGCC 1 cut(s) 80
ApaI GGGCCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 356, 416
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 80, 81, 181, 464
AsuHPI GGTGA 3 cut(s) 13, 149, 262
AvaII GGWCC 2 cut(s) 181, 464
BaeGI GKGCMC 1 cut(s) 84
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BanII GRGCYC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 168, 197
BbvI GCAGC 2 cut(s) 343, 428
BccI CCATC 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 3 cut(s) 357, 417, 420
BlsI GCNGC 3 cut(s) 358, 418, 421
Bme18I GGWCC 2 cut(s) 181, 464
BmgT120I GGNCC 4 cut(s) 80, 81, 181, 464
BmiI GGNNCC 1 cut(s) 82
BmrI ACTGGG 2 cut(s) 228, 343
BmuI ACTGGG 2 cut(s) 228, 343
BpiI GAAGAC 2 cut(s) 168, 197
BpmI CTGGAG 1 cut(s) 361
Bsa29I ATCGAT 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 333
Bse1I ACTGG 3 cut(s) 223, 338, 344
BseAI TCCGGA 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 49, 231
BseLI CCNNNNNNNGG 2 cut(s) 89, 333
BseNI ACTGG 3 cut(s) 223, 338, 344
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 343, 428
BshFI GGCC 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 266
BsiSI CCGG 2 cut(s) 124, 238
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 89, 333
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 1 cut(s) 82
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 267, 319, 380
BspACI CCGC 1 cut(s) 419
BspANI GGCC 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 266
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 327, 388
BspQI GCTCTTC 1 cut(s) 60
BsrI ACTGG 3 cut(s) 223, 338, 344
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 3 cut(s) 267, 319, 380
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 3 cut(s) 33, 60, 206
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 52, 363
BstF5I GGATG 2 cut(s) 49, 231
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 3 cut(s) 270, 322, 383
BstMBI GATC 3 cut(s) 267, 319, 380
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 343, 428
BstV2I GAAGAC 2 cut(s) 168, 197
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 266
BsuRI GGCC 1 cut(s) 82
BsuTUI ATCGAT 1 cut(s) 266
BtsCI GGATG 2 cut(s) 49, 231
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 4 cut(s) 80, 81, 181, 464
ClaI ATCGAT 1 cut(s) 266
Csp6I GTAC 1 cut(s) 298
CviJI RGCY 7 cut(s) 51, 82, 121, 173, 279, 356, 404
CviKI_1 RGCY 7 cut(s) 51, 82, 121, 173, 279, 356, 404
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 52, 363
DpnI GATC 3 cut(s) 269, 321, 382
DpnII GATC 3 cut(s) 267, 319, 380
DraI TTTAAA 1 cut(s) 448
Eam1104I CTCTTC 3 cut(s) 33, 60, 206
EarI CTCTTC 3 cut(s) 33, 60, 206
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 181, 464
Eco47III AGCGCT 1 cut(s) 432
Eco72I CACGTG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 376
FaiI YATR 3 cut(s) 28, 167, 486
FaqI GGGAC 1 cut(s) 350
Fnu4HI GCNGC 3 cut(s) 357, 417, 420
FokI GGATG 2 cut(s) 56, 238
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 3 cut(s) 357, 417, 420
GlaI GCGC 1 cut(s) 432
GluI GCNGC 3 cut(s) 357, 417, 420
GsuI CTGGAG 1 cut(s) 361
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 124, 238
HhaI GCGC 1 cut(s) 433
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 2 cut(s) 155, 199
HpaII CCGG 2 cut(s) 124, 238
HphI GGTGA 3 cut(s) 13, 149, 262
Hpy166II GTNNAC 2 cut(s) 181, 464
Hpy188I TCNGA 4 cut(s) 160, 204, 385, 456
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 181, 464
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 247, 460
HpyCH4V TGCA 2 cut(s) 476, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 52, 363
HpySE526I ACGT 2 cut(s) 247, 460
HspAI GCGC 1 cut(s) 431
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 267, 319, 380
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 126, 240, 353
LpnPI CCDG 9 cut(s) 88, 113, 137, 204, 251, 286, 319, 325, 480
Lsp1109I GCAGC 2 cut(s) 343, 428
MaeII ACGT 2 cut(s) 247, 460
MalI GATC 3 cut(s) 269, 321, 382
MboI GATC 3 cut(s) 267, 319, 380
MboII GAAGA 9 cut(s) 6, 50, 71, 74, 77, 173, 202, 223, 314
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 5 cut(s) 34, 71, 86, 310, 336
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 3 cut(s) 309, 369, 447
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 124, 238
Mva1269I GAATGC 1 cut(s) 495
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 3 cut(s) 267, 319, 380
NlaIV GGNNCC 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 60
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 155, 199
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 3 cut(s) 358, 418, 421
PmaCI CACGTG 1 cut(s) 461
PmlI CACGTG 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 461
PspCI CACGTG 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 82
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 4 cut(s) 80, 81, 181, 464
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 309, 369, 447
SatI GCNGC 3 cut(s) 357, 417, 420
Sau3AI GATC 3 cut(s) 267, 319, 380
Sau96I GGNCC 4 cut(s) 80, 81, 181, 464
SduI GDGCHC 1 cut(s) 84
SinI GGWCC 2 cut(s) 181, 464
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 250, 463
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 111
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 2 cut(s) 155, 199
Tru1I TTAA 3 cut(s) 309, 369, 447
Tru9I TTAA 3 cut(s) 309, 369, 447
TscAI CASTG 1 cut(s) 429
TseI GCWGC 2 cut(s) 356, 416
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 429
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 2 cut(s) 181, 464
XmnI GAANNNNTTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.