Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Forward (+)

7088827 .. 7089672

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGCACTTACTCAAGCAGTGAAGAGAAGGCAAAGCGTTTTGCAATATTCAAGGAGGATCGAGTTTGATCATATAGAAAACTTCAACAGCCAAGGGAAACATAGATTCACATTAGGCCTCAATGCATTCAGTGATCTGACTGATAAAGAGTTCGATCAGACACATGGTTGCACGACTGCTATACCAACAAACACAAACCCTAGCTCAGTCTCTTCTTTTAGCTATCAAGATTTTGAAATTGAGGATCTTCCCCAAAACTGGGACTGGAGGACACAAGGAGCTGTGACCAGTGTCAAGGACCAAGGAAAATGTGGTTGTAGTTGGGCTTTTGCAATAGCAGCAGCACTGGAAGGGCTCACCCCATTCTACAATAAACCTTCTGGAAAACTTGTGAACTTGTCCGTGCAAGAACTTGTAGCCTGTAGTAAGCCGTATGGCACCAATGGCCGTCAAGGGGGTCAAGCGATTAATGCTATCAAGTACGTAAGGGATCATGGACTCGTAACTGAAGAAAAGTTTCCTTACCGGTTTGCTGACGACCAATCATGCGACACCGCGTTCGAATCTTCCCCTGATATACAAATCTCTGGTTATGAAGCTGTGCCTGAGTTTGATGAAGTTGCTCTAGCCAAGGCTGTTTACCATCAACCAGTTGTAGTTACGCATTCCGCCAGCATTAATTTTCGCCGATACAAAGGTGGTATTTTTATAGATGCTGATGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

243

Amino Acids

27.03

Weight (kDa)

5.52

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	24 - 52	4.4e-07	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	84 - 239	2.1e-37	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	558, 672
AclWI	GGATC	3 cut(s)	68, 255, 501
AcoI	YGGCCR	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	261, 262, 457
AgeI	ACCGGT	1 cut(s)	528
AgsI	TTSAA	3 cut(s)	54, 88, 239
AluBI	AGCT	4 cut(s)	207, 225, 284, 602
AluI	AGCT	4 cut(s)	207, 225, 284, 602
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	68, 255, 501
AoxI	GGCC	2 cut(s)	118, 448
ApeKI	GCWGC	2 cut(s)	341, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AseI	ATTAAT	2 cut(s)	471, 681
AsiGI	ACCGGT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	352
AsuII	TTCGAA	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	685, 718
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	353, 356
BccI	CCATC	2 cut(s)	654, 716
BceAI	ACGGC	2 cut(s)	418, 435
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	204, 629
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	342, 345
BlsI	GCNGC	2 cut(s)	343, 346
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	706
BmuI	ACTGGG	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	94, 304, 633
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 262, 457
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	5 cut(s)	266, 272, 291, 354, 653
BseDI	CCNNGG	3 cut(s)	94, 304, 633
BseLI	CCNNNNNNNGG	3 cut(s)	261, 262, 457
BseMII	CTCAG	2 cut(s)	222, 600
BseNI	ACTGG	5 cut(s)	266, 272, 291, 354, 653
BseXI	GCAGC	2 cut(s)	353, 356
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	2 cut(s)	120, 450
BshNI	GGYRCC	1 cut(s)	440
BshTI	ACCGGT	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	261, 262, 457
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	2 cut(s)	128, 667
BsnI	GGCC	2 cut(s)	120, 450
Bsp119I	TTCGAA	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
BspACI	CCGC	2 cut(s)	558, 672
BspANI	GGCC	2 cut(s)	120, 450
BspCNI	CTCAG	2 cut(s)	221, 601
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	3 cut(s)	68, 255, 501
BspT104I	TTCGAA	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	266, 272, 291, 354, 653
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	3 cut(s)	94, 304, 633
BssMI	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
BssT1I	CCWWGG	3 cut(s)	94, 304, 633
Bst6I	CTCTTC	2 cut(s)	20, 220
BstBAI	YACGTR	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	208, 609
BstFNI	CGCG	1 cut(s)	560
BstKTI	GATC	6 cut(s)	63, 73, 139, 160, 250, 496
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 447, 473
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	424
BstSNI	TACGTA	1 cut(s)	487
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	353, 356
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	120, 450
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	4 cut(s)	27, 139, 298, 347
Cac8I	GCNNGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	528
CviAII	CATG	3 cut(s)	167, 497, 549
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	208, 609
DpnI	GATC	6 cut(s)	62, 72, 138, 159, 249, 495
DpnII	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	20, 220
EarI	CTCTTC	2 cut(s)	20, 220
EciI	GGCGGA	1 cut(s)	661
Eco105I	TACGTA	1 cut(s)	487
Eco130I	CCWWGG	3 cut(s)	94, 304, 633
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	531
EcoT14I	CCWWGG	3 cut(s)	94, 304, 633
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	3 cut(s)	94, 304, 633
FaeI	CATG	3 cut(s)	170, 500, 552
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	166, 496, 548
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	342, 345
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	342, 345
FspBI	CTAG	2 cut(s)	204, 629
GluI	GCNGC	2 cut(s)	342, 345
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	120, 450
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	170, 500, 552
HinfI	GANTC	3 cut(s)	108, 501, 566
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	397, 643
Hpy188I	TCNGA	2 cut(s)	141, 162
Hpy188III	TCNNGA	2 cut(s)	230, 384
Hpy8I	GTNNAC	2 cut(s)	397, 643
HpyAV	CCTTC	3 cut(s)	24, 347, 390
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	46, 128, 174, 335, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 447, 473
HpyF3I	CTNAG	2 cut(s)	208, 609
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	170, 500, 552
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	353, 356
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	2 cut(s)	204, 629
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	3 cut(s)	286, 505, 661
MalI	GATC	6 cut(s)	62, 72, 138, 159, 249, 495
MboI	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
MboII	GAAGA	5 cut(s)	37, 207, 242, 524, 561
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	2 cut(s)	240, 682
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	51, 131, 238, 264
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	471, 681
MspI	CCGG	1 cut(s)	529
Mva1269I	GAATGC	2 cut(s)	128, 667
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	3 cut(s)	341, 447, 473
NdeII	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
NlaIII	CATG	3 cut(s)	170, 500, 552
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	120
PctI	GAATGC	2 cut(s)	128, 667
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	108, 566
PinAI	ACCGGT	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	343, 346
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	487
PshAI	GACNNNNGTC	1 cut(s)	293
PshBI	ATTAAT	2 cut(s)	471, 681
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	471, 681
SatI	GCNGC	2 cut(s)	342, 345
Sau3AI	GATC	6 cut(s)	60, 70, 136, 157, 247, 493
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	7 cut(s)	209, 227, 286, 382, 489, 604, 703
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	564
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SnaBI	TACGTA	1 cut(s)	487
Sse9I	AATT	2 cut(s)	240, 682
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	558, 672
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	2 cut(s)	204, 629
StuI	AGGCCT	1 cut(s)	120
StyI	CCWWGG	3 cut(s)	94, 304, 633
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	63, 156, 564
TasI	AATT	2 cut(s)	240, 682
TfiI	GAWTC	2 cut(s)	108, 566
Tru1I	TTAA	2 cut(s)	471, 681
Tru9I	TTAA	2 cut(s)	471, 681
TscAI	CASTG	4 cut(s)	27, 139, 298, 354
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	341, 344
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	612, 633
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	4 cut(s)	27, 139, 298, 354
VpaK11BI	GGWCC	1 cut(s)	301
VspI	ATTAAT	2 cut(s)	471, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	204, 629
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.