Rw0G000760

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00020
OG0014719
Physical Location & Seq
Reverse (-)
159256 .. 160138
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000760.1

Sequence Viewer

Length: 744 bp
ATGTTTTTTCAAGTAAAAACTCTTGAACTAATATTATGCGTTGTCTTGATAGGAAGTTTAGCAGTGTCTAAAGCCTCGTCGCGAGCATTACTTTTTGAAGCTAATGATTCCATGAATATTTTGCAAGCATTTGAGAACTGGATGAAAGAGCATGGACGCAATTACTCAAGCAGTGAGGAGAAGGCAGAGCGTTTTGCAATATTCAAGGAGGAGTTTGATCATATAGAAAACTTCAACAGGCAAGGGAAACATAGATTCACATTAGGCCTCAATGCATTCAGTGATCTGACTGATAAAGAGTTCGATGAGACATATGGTTGCACGACTTCTATACCAACAAACACAAACCCTAGCTCAGTCTCTTCTTTTAGCTATCAAGATTTTGAAATTGAGGATCTTCCCCAAAACTGGGACTGGAGGACAGAACGAGCTGTGACCAGTGTCAAGGACCAAGGAAAATGTGCAGCAGCAGTGGAAGGGCTCACCCCATTCTACAATAAACCTTATGGAAAACTTGTGAACTTGTCCATGCAAGAACTTGTAGCCTGTAGTAAGCCGTATGGCACCAATGGCTGTAAAGGGGGTCAAGCGATTAATGCTATCAAGTACGTAAGGGATCATGAACTCATAACTGAAGAAAAGTTTCCTTACCGGTTTGCTGACGACCAATCATGCGACACTGCGTTCGAATCTTCCCCTGATATAAAAATCTCTGCTGAGGTTGATGCTAGAGCAACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

247

Amino Acids

27.88

Weight (kDa)

4.92

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 44 - 101 8.1e-20 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 133 - 231 5.4e-20 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 1 cut(s) 82
AclWI GGATC 2 cut(s) 402, 624
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 2 cut(s) 408, 409
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 6 cut(s) 11, 26, 98, 205, 235, 386
AluBI AGCT 4 cut(s) 101, 354, 372, 431
AluI AGCT 4 cut(s) 101, 354, 372, 431
Alw26I GTCTC 2 cut(s) 302, 364
AlwI GGATC 2 cut(s) 402, 624
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 464, 467
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AseI ATTAAT 1 cut(s) 594
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 687
AvaII GGWCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 483
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 476, 479
BceAI ACGGC 1 cut(s) 541
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 302, 364
BfaI CTAG 2 cut(s) 351, 729
BfmI CTRYAG 1 cut(s) 547
BisI GCNGC 2 cut(s) 465, 468
BlsI GCNGC 2 cut(s) 466, 469
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 565
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 715
BmuI ACTGGG 1 cut(s) 418
BoxI GACNNNNGTC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 651
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 409
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 4 cut(s) 143, 413, 419, 438
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 408, 409
BseMII CTCAG 2 cut(s) 369, 708
BseNI ACTGG 4 cut(s) 143, 413, 419, 438
BseRI GAGGAG 2 cut(s) 191, 224
BseXI GCAGC 2 cut(s) 476, 479
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 563
BshTI ACCGGT 1 cut(s) 651
BsiSI CCGG 1 cut(s) 652
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 408, 409
BsmAI GTCTC 2 cut(s) 302, 364
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 687
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 4 cut(s) 217, 283, 394, 616
Bsp68I TCGCGA 1 cut(s) 82
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 368, 709
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 2 cut(s) 402, 624
BspT104I TTCGAA 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 4 cut(s) 143, 413, 419, 438
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 4 cut(s) 217, 283, 394, 616
BssT1I CCWWGG 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 610
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 2 cut(s) 84, 126
BstDEI CTNAG 2 cut(s) 355, 717
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 4 cut(s) 220, 286, 397, 619
BstMAI GTCTC 2 cut(s) 302, 364
BstMBI GATC 4 cut(s) 217, 283, 394, 616
BstMWI GCNNNNNNNGC 2 cut(s) 570, 596
BstPAI GACNNNNGTC 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 547
BstSNI TACGTA 1 cut(s) 610
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 476, 479
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 4 cut(s) 69, 178, 477, 678
BtsIMutI CAGTG 6 cut(s) 69, 178, 286, 445, 477, 678
BtuMI TCGCGA 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 84, 126
CciI TCATGA 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 607
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 5 cut(s) 112, 152, 529, 620, 672
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 355, 717
DpnI GATC 4 cut(s) 219, 285, 396, 618
DpnII GATC 4 cut(s) 217, 283, 394, 616
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco105I TACGTA 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 115, 155, 532, 623, 675
FaqI GGGAC 1 cut(s) 425
FatI CATG 5 cut(s) 111, 151, 528, 619, 671
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 465, 468
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 2 cut(s) 465, 468
FspBI CTAG 2 cut(s) 351, 729
GluI GCNGC 2 cut(s) 465, 468
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 652
HgaI GACGC 1 cut(s) 165
Hin1II CATG 5 cut(s) 115, 155, 532, 623, 675
HinfI GANTC 3 cut(s) 107, 255, 689
HpaII CCGG 1 cut(s) 652
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 5 cut(s) 23, 46, 81, 377, 620
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 175, 470
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 6 cut(s) 124, 197, 275, 321, 464, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 570, 596
HpyF3I CTNAG 2 cut(s) 355, 717
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 5 cut(s) 115, 155, 532, 623, 675
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 4 cut(s) 217, 283, 394, 616
LpnPI CCDG 8 cut(s) 124, 223, 394, 400, 451, 559, 665, 711
Lsp1109I GCAGC 2 cut(s) 476, 479
LweI GCATC 1 cut(s) 715
MaeI CTAG 2 cut(s) 351, 729
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 1 cut(s) 433
MalI GATC 4 cut(s) 219, 285, 396, 618
MboI GATC 4 cut(s) 217, 283, 394, 616
MboII GAAGA 4 cut(s) 354, 389, 647, 684
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 2 cut(s) 160, 387
MnlI CCTC 7 cut(s) 85, 169, 202, 278, 385, 411, 712
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 1 cut(s) 594
MspI CCGG 1 cut(s) 652
Mva1269I GAATGC 1 cut(s) 275
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 570, 596
NdeI CATATG 1 cut(s) 313
NdeII GATC 4 cut(s) 217, 283, 394, 616
NlaIII CATG 5 cut(s) 115, 155, 532, 623, 675
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 433
NruI TCGCGA 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 277
NspV TTCGAA 1 cut(s) 687
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 267
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 107, 255, 689
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 2 cut(s) 466, 469
Ppu21I YACGTR 1 cut(s) 610
PshAI GACNNNNGTC 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 1 cut(s) 448
PsuI RGATCY 1 cut(s) 394
RruI TCGCGA 1 cut(s) 82
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 2 cut(s) 465, 468
Sau3AI GATC 4 cut(s) 217, 283, 394, 616
Sau96I GGNCC 1 cut(s) 448
SduI GDGCHC 1 cut(s) 483
SetI ASST 7 cut(s) 103, 356, 374, 433, 505, 612, 723
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SnaBI TACGTA 1 cut(s) 610
Sse9I AATT 2 cut(s) 160, 387
SseBI AGGCCT 1 cut(s) 267
SspI AATATT 3 cut(s) 33, 118, 201
SspMI CTAG 2 cut(s) 351, 729
StuI AGGCCT 1 cut(s) 267
StyI CCWWGG 1 cut(s) 451
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 303, 687
TasI AATT 2 cut(s) 160, 387
TfiI GAWTC 3 cut(s) 107, 255, 689
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 6 cut(s) 69, 178, 286, 445, 477, 685
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 464, 467
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 4 cut(s) 128, 158, 636, 729
TspRI CASTG 6 cut(s) 69, 178, 286, 445, 477, 685
VpaK11BI GGWCC 1 cut(s) 448
VspI ATTAAT 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 2 cut(s) 351, 729
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.