Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021314.1

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Reverse (-)

426 .. 862

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021314.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgcaagaacttgtagcctgtagtaagccgtatgtcaccaatggctgtaaagggggtcaagcgattaatgctatcaattgggcttttgcaatagcagcagcagtggaagggctcaccccattctacaataaaccttatggaaaacttgtgaacttgtccatgcaagaacttgtagcctgtagtaagccgtatggcaccaatggctgtaaagggggtcaagcgattaatgctatcaagtacgtaagggatcatggactcgtaactgaagaaaagtttccttaccggtttgctgacgaccaatcatgcgacaccgcgttcgaatcttcccctgatataaaaatctctgctgaggttgatgctagagcaacttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

124

Amino Acids

13.35

Weight (kDa)

5.77

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccII	CGCG	1 cut(s)	314
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	239
AgeI	ACCGGT	1 cut(s)	282
AlwI	GGATC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	95, 98
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	2 cut(s)	66, 225
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	28, 106
AsuII	TTCGAA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	107, 110
BceAI	ACGGC	2 cut(s)	13, 172
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	2 cut(s)	19, 178
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	107, 110
Bsh1236I	CGCG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssMI	GATC	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 95, 201, 227
BstSFI	CTRYAG	2 cut(s)	19, 178
BstSNI	TACGTA	1 cut(s)	241
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	107, 110
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	3 cut(s)	160, 251, 303
CviJI	RGCY	8 cut(s)	17, 28, 45, 83, 112, 176, 187, 204
CviKI_1	RGCY	8 cut(s)	17, 28, 45, 83, 112, 176, 187, 204
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	163, 254, 306
FaiI	YATR	8 cut(s)	33, 138, 161, 192, 252, 304, 335, 373
FatI	CATG	3 cut(s)	159, 250, 302
Fnu4HI	GCNGC	2 cut(s)	96, 99
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	96, 99
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	3 cut(s)	163, 254, 306
HinfI	GANTC	2 cut(s)	255, 320
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	2 cut(s)	28, 106
Hpy166II	GTNNAC	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	4, 89, 163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 95, 201, 227
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	163, 254, 306
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	31, 190, 296, 342
Lsp1109I	GCAGC	2 cut(s)	107, 110
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	34, 259
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	278, 315
MfeI	CAATTG	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	2 cut(s)	66, 225
MspI	CCGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	4 cut(s)	68, 95, 201, 227
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	163, 254, 306
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	320
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	241
PshBI	ATTAAT	2 cut(s)	66, 225
PspN4I	GGNNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	66, 225
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	3 cut(s)	136, 243, 354
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	19, 178
SfuI	TTCGAA	1 cut(s)	318
SnaBI	TACGTA	1 cut(s)	241
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	1 cut(s)	360
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	66, 225
Tru9I	TTAA	2 cut(s)	66, 225
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	95, 98
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	108
VspI	ATTAAT	2 cut(s)	66, 225
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.