Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Forward (+)

51212681 .. 51214822

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTTTTCGAAACAAACGTTTTGCTCTAGTATTGTGCATCATCTTGCTCGGGATTCTGGCAGTGCCAGAAGCCTCATCGCGAGCATTAGTCTTTGAACCAAATGATAATTCCATGAATATTTCCCAAATATTTGAAAAATGGATGGAGAAGCACGGACGCGTCTACTCAAACATCTCAGAGAAGGAAAAGCGTTTCGCAATATTCAAGGCCAACTTTGAGCACATGGAAAAATTCAACAGCCAAAGGAAAGAGAGTTTCACACTAGGCATCAATGCATTTAGTGATTTGACTCATGAAGAAATTCACGAAAGATATGGCAACACGTTGGAAATGCCCAAAATCACCAGAAGCTCAAACTCATCTTTTAGGTACAGCAGTATTGAATACGAGGATCTTCCCAAAAACTGGGACTGGAGGACAAAAGGAGCTGTCACTAAGGTTAAGCACCAAGGATCAGAGTGTGGTTGTTGTTGGGCTTTTTCAACAGCAACGGCAGTGGAAGCGCTTCCCCCAATCTTTAAAAATCTAACACCTATGGACCTGTCCGTGCAGCAACTTATAGAATGCAATAAAGACTTTGGTACCCATGGCTGCACCAATGGTAAAACAATTAACGCCTTGCGATATGTAAAGGAATATGGGCTTGTAACTGAAGACAGATACCCTTACCAACAGTTAGATGATCACCCATATGACACCAAGTTACAGTCAAATCCTGATGTAAAGATACGCGACTATGAATGGGCGCTTGAATTTGATGAAATTGCTCGGCTAAGGCTGTGTACCATCGGTGGCGGAGCCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

270

Amino Acids

31.16

Weight (kDa)

6.67

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	45 - 102	9.3e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	133 - 248	1.9e-28	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	3 cut(s)	82, 162, 735
AciI	CCGC	1 cut(s)	798
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	2 cut(s)	402, 463
AcsI	RAATTY	3 cut(s)	233, 303, 755
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	3 cut(s)	374, 586, 787
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflIII	ACRYGT	2 cut(s)	160, 324
AgsI	TTSAA	7 cut(s)	98, 137, 208, 238, 386, 486, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	2 cut(s)	354, 431
AluI	AGCT	2 cut(s)	354, 431
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	402, 463
Ama87I	CYCGRG	1 cut(s)	50
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	553, 594
ApoI	RAATTY	3 cut(s)	233, 303, 755
Asp700I	GAANNNNTTC	2 cut(s)	303, 507
Asp718I	GGTACC	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	508, 751
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	337, 680
AsuII	TTCGAA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	541
BaeI	ACNNNNGTAYC	4 cut(s)	364, 397, 568, 601
BanI	GGYRCC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	565, 581
BccI	CCATC	2 cut(s)	139, 797
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	685
BfaI	CTAG	2 cut(s)	29, 266
BfoI	RGCGCY	2 cut(s)	509, 752
BisI	GCNGC	2 cut(s)	554, 595
BlsI	GCNGC	2 cut(s)	555, 596
Bme18I	GGWCC	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	586, 802
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	48, 279
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	436
Bpu10I	CCTNAGC	1 cut(s)	776
Bpu14I	TTCGAA	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	451, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	413, 419
BseDI	CCNNGG	2 cut(s)	451, 589
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	413, 419
BseXI	GCAGC	2 cut(s)	565, 581
BsgI	GTGCAG	2 cut(s)	572, 580
Bsh1236I	CGCG	3 cut(s)	82, 162, 735
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	394, 455, 685
Bsp19I	CCATGG	1 cut(s)	589
Bsp68I	TCGCGA	1 cut(s)	82
BspACI	CCGC	1 cut(s)	798
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	3 cut(s)	82, 162, 735
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	586, 802
BspPI	GGATC	2 cut(s)	402, 463
BspT104I	TTCGAA	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	413, 419
BssECI	CCNNGG	2 cut(s)	451, 589
BssMI	GATC	3 cut(s)	394, 455, 685
BssT1I	CCWWGG	2 cut(s)	451, 589
Bst4CI	ACNGT	2 cut(s)	678, 711
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	178, 438, 776
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	3 cut(s)	82, 162, 735
BstH2I	RGCGCY	2 cut(s)	509, 752
BstHHI	GCGC	2 cut(s)	508, 751
BstKTI	GATC	3 cut(s)	397, 458, 688
BstMBI	GATC	3 cut(s)	394, 455, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstUI	CGCG	3 cut(s)	82, 162, 735
BstV1I	GCAGC	2 cut(s)	565, 581
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	2 cut(s)	69, 504
BtsIMutI	CAGTG	2 cut(s)	69, 504
BtuMI	TCGCGA	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	2 cut(s)	508, 751
Cfr13I	GGNCC	1 cut(s)	541
CseI	GACGC	2 cut(s)	151, 168
Csp6I	GTAC	3 cut(s)	373, 585, 786
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	4 cut(s)	115, 226, 296, 590
CviQI	GTAC	3 cut(s)	373, 585, 786
DdeI	CTNAG	3 cut(s)	178, 438, 776
DpnI	GATC	3 cut(s)	396, 457, 687
DpnII	GATC	3 cut(s)	394, 455, 685
DraI	TTTAAA	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	813
Eco130I	CCWWGG	2 cut(s)	451, 589
Eco47I	GGWCC	1 cut(s)	541
Eco47III	AGCGCT	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	451, 589
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	451, 589
FaeI	CATG	4 cut(s)	118, 229, 299, 593
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	114, 225, 295, 589
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	554, 595
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	554, 595
FspBI	CTAG	2 cut(s)	29, 266
GlaI	GCGC	2 cut(s)	507, 750
GluI	GCNGC	2 cut(s)	554, 595
GsuI	CTGGAG	1 cut(s)	436
HaeII	RGCGCY	2 cut(s)	509, 752
HaeIII	GGCC	1 cut(s)	212
HgaI	GACGC	2 cut(s)	151, 168
HhaI	GCGC	2 cut(s)	508, 751
Hin1II	CATG	4 cut(s)	118, 229, 299, 593
Hin6I	GCGC	2 cut(s)	506, 749
HinP1I	GCGC	2 cut(s)	506, 749
HinfI	GANTC	2 cut(s)	55, 292
HphI	GGTGA	2 cut(s)	337, 680
Hpy166II	GTNNAC	2 cut(s)	166, 786
Hpy188I	TCNGA	2 cut(s)	181, 460
Hpy188III	TCNNGA	5 cut(s)	52, 81, 296, 308, 719
Hpy8I	GTNNAC	2 cut(s)	166, 786
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	678, 711
HpyCH4IV	ACGT	2 cut(s)	19, 326
HpyCH4V	TGCA	5 cut(s)	39, 278, 553, 570, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	3 cut(s)	178, 438, 776
HpySE526I	ACGT	2 cut(s)	19, 326
Hsp92II	CATG	4 cut(s)	118, 229, 299, 593
HspAI	GCGC	2 cut(s)	506, 749
KpnI	GGTACC	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	3 cut(s)	394, 455, 685
LmnI	GCTCC	2 cut(s)	428, 800
LpnPI	CCDG	7 cut(s)	44, 81, 361, 394, 400, 557, 732
Lsp1109I	GCAGC	2 cut(s)	565, 581
LweI	GCATC	2 cut(s)	48, 279
MaeI	CTAG	2 cut(s)	29, 266
MaeII	ACGT	2 cut(s)	19, 326
MaeIII	GTNAC	3 cut(s)	433, 649, 705
MalI	GATC	3 cut(s)	396, 457, 687
MboI	GATC	3 cut(s)	394, 455, 685
MboII	GAAGA	3 cut(s)	311, 389, 668
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	7 cut(s)	109, 233, 303, 612, 755, 765, 808
MluI	ACGCGT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	85, 385, 411
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	2 cut(s)	303, 507
MseI	TTAA	4 cut(s)	444, 522, 615, 811
MslI	CAYNNNNRTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	572
MvnI	CGCG	3 cut(s)	82, 162, 735
MwoI	GCNNNNNNNGC	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	3 cut(s)	394, 455, 685
NlaIII	CATG	4 cut(s)	118, 229, 299, 593
NlaIV	GGNNCC	2 cut(s)	586, 802
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	433
NruI	TCGCGA	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	10
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PctI	GAATGC	1 cut(s)	572
PdmI	GAANNNNTTC	2 cut(s)	303, 507
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	555, 596
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	586, 802
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	82
RsaI	GTAC	3 cut(s)	374, 586, 787
RsaNI	GTAC	3 cut(s)	373, 585, 786
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	444, 522, 615, 811
SatI	GCNGC	2 cut(s)	554, 595
Sau3AI	GATC	3 cut(s)	394, 455, 685
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	22, 329, 356, 374, 433, 444, 538, 546
SfaNI	GCATC	2 cut(s)	48, 279
SfuI	TTCGAA	1 cut(s)	10
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	7 cut(s)	109, 233, 303, 612, 755, 765, 808
SsiI	CCGC	1 cut(s)	798
SspI	AATATT	3 cut(s)	121, 132, 204
SspMI	CTAG	2 cut(s)	29, 266
StyI	CCWWGG	2 cut(s)	451, 589
TaaI	ACNGT	2 cut(s)	678, 711
TaiI	ACGT	2 cut(s)	22, 329
TaqI	TCGA	1 cut(s)	10
TasI	AATT	7 cut(s)	109, 233, 303, 612, 755, 765, 808
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	4 cut(s)	444, 522, 615, 811
Tru9I	TTAA	4 cut(s)	444, 522, 615, 811
TscAI	CASTG	2 cut(s)	69, 504
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	553, 594
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	131, 312, 756, 777
TspGWI	ACGGA	2 cut(s)	171, 538
TspRI	CASTG	2 cut(s)	69, 504
Van91I	CCANNNNNTGG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	541
XapI	RAATTY	3 cut(s)	233, 303, 755
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	2 cut(s)	303, 507
XspI	CTAG	2 cut(s)	29, 266
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.