RLG00000034399

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014719
Physical Location & Seq
Reverse (-)
42097094 .. 42098267
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034399

Sequence Viewer

Length: 1083 bp
ATGGCTTTTCCAAACAAACGTTTTGCTCTAGTATTGTGCCTCATCTTGCTCGGGATTCTGGCAGTGCCAGAAGCCTCATCGCGAGCATTAGTCTTTGAACCAAATGATAATTCCATGAATATTTCCCAAATATTTGAAAAATGGATGGAGAAGCACGGACGCGTCTACTCAGACATCTCAGAGAAGGAAAAGCGTTTCGCAATATTCAAGGCTAACTTTGAGCACATGGAAAAATTCAACAGCCAAAGGAAAGAGAGTTTCACACTAGGCATCAATGCATTTAGTGATTTGACTCATGAAGAAATTCACGAAAGATATGGCAACACGTTGGAAATGCCCAAAATCACCAGAAGCTCAAACTCATCTTTTAGGTACAGCAGTATTGAATACGAGGATCTTCCCAAAAACTGGGACTGGAGGACAAAAGGAGCTGTCACTAAGGTTAAGCACCAAGGATCAGAGTGTGGTTGTTGTTGGGCTTTTTCAACAGCAGCGGCAGTGGAAGCGCTTCCCCCAATCTTTAAAAATCTAACACCTATGGACCTGTCCGTGCAGCAACTTATAGAATGCAGTAAAGACTTTGGTACCCATGGCTGCACCAATGGTAAAACAATTAACGCCTTGCGATACGTAAAGGAATATGGGCTTGTAACTGAAGACAGATACCCTTACCAGCAGTTGGATGATCACCCATGTGACACCAACTTACAGTCAAATCCTGATGTAAAGATACGCGACTATGAATGGGCGCCTGAATTTGATGAAATTGCTCTGGCTAAGGCTGTGTACCATCAACCTGTTACAATCATGCACGCCACCAGCAGGGAATTTTATCGGTATGCAGGTGGTGTCTTCACAGATTCAGCTGGAGTGTGCACGAGAAATGAAGTGAGTCACAGTAGTCTACTCATTGGGTACGGGACGACCCCAGATGGTCTCGATTATTGGCTATTAAAGAATTCATGGGGCGAGTCTTGGGGTGAACAGGGATATATGAGATTGCTCAGAAGTACGAAGAAGAAGCGAGGTCAAGGTGTTTGTAAATGTGCGGGCTTAGCTTTGTTCCCAATTAACGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

41.0

Weight (kDa)

6.38

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 45 - 102 7.6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 133 - 345 3.2e-60 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 833
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 2 cut(s) 584, 748
AccB7I CCANNNNNTGG 2 cut(s) 408, 679
AccI GTMKAC 2 cut(s) 165, 904
AccII CGCG 3 cut(s) 82, 162, 735
AciI CCGC 2 cut(s) 494, 1049
AclI AACGTT 1 cut(s) 19
AclWI GGATC 2 cut(s) 402, 463
AcsI RAATTY 5 cut(s) 233, 303, 755, 827, 958
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 5 cut(s) 374, 586, 788, 917, 1012
AfeI AGCGCT 1 cut(s) 507
AfiI CCNNNNNNNGG 3 cut(s) 408, 679, 822
AflIII ACRYGT 2 cut(s) 160, 324
AgsI TTSAA 6 cut(s) 98, 137, 208, 238, 386, 486
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AleI CACNNNNGTG 1 cut(s) 693
AluBI AGCT 4 cut(s) 354, 431, 866, 1058
AluI AGCT 4 cut(s) 354, 431, 866, 1058
Alw21I GWGCWC 2 cut(s) 225, 878
Alw26I GTCTC 1 cut(s) 941
Alw44I GTGCAC 1 cut(s) 874
AlwI GGATC 2 cut(s) 402, 463
Ama87I CYCGRG 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 507
ApaLI GTGCAC 1 cut(s) 874
ApeKI GCWGC 3 cut(s) 491, 553, 594
ApoI RAATTY 5 cut(s) 233, 303, 755, 827, 958
Asp700I GAANNNNTTC 2 cut(s) 303, 507
Asp718I GGTACC 1 cut(s) 584
AspLEI GCGC 2 cut(s) 508, 751
AspS9I GGNCC 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 337, 680, 992
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 878
BaeI ACNNNNGTAYC 4 cut(s) 364, 397, 568, 601
BanI GGYRCC 2 cut(s) 584, 748
BauI CACGAG 1 cut(s) 877
BbsI GAAGAC 2 cut(s) 663, 844
Bbv12I GWGCWC 2 cut(s) 225, 878
BbvI GCAGC 3 cut(s) 503, 565, 581
BccI CCATC 3 cut(s) 139, 798, 926
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 941
BfaI CTAG 2 cut(s) 29, 266
BfoI RGCGCY 2 cut(s) 509, 752
BfuAI ACCTGC 1 cut(s) 833
BisI GCNGC 4 cut(s) 492, 495, 554, 595
BlpI GCTNAGC 1 cut(s) 1054
BlsI GCNGC 4 cut(s) 493, 496, 555, 596
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 2 cut(s) 586, 750
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 663, 844
BpmI CTGGAG 2 cut(s) 436, 888
Bpu10I CCTNAGC 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 1054
BsaAI YACGTR 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 451, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 679, 822
Bse1I ACTGG 2 cut(s) 413, 419
BseDI CCNNGG 2 cut(s) 451, 589
BseGI GGATG 2 cut(s) 150, 688
BseLI CCNNNNNNNGG 3 cut(s) 408, 679, 822
BseMII CTCAG 3 cut(s) 183, 192, 1018
BseNI ACTGG 2 cut(s) 413, 419
BseSI GKGCMC 1 cut(s) 878
BseXI GCAGC 3 cut(s) 503, 565, 581
BsgI GTGCAG 2 cut(s) 572, 580
Bsh1236I CGCG 3 cut(s) 82, 162, 735
BshNI GGYRCC 2 cut(s) 584, 748
BsiHKAI GWGCWC 2 cut(s) 225, 878
BsiHKCI CYCGRG 1 cut(s) 50
BslFI GGGAC 2 cut(s) 425, 934
BslI CCNNNNNNNGG 3 cut(s) 408, 679, 822
BsmAI GTCTC 1 cut(s) 941
BsmFI GGGAC 2 cut(s) 425, 934
BsmI GAATGC 1 cut(s) 572
Bso31I GGTCTC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 225, 878
Bsp143I GATC 3 cut(s) 394, 455, 685
Bsp1720I GCTNAGC 1 cut(s) 1054
Bsp19I CCATGG 1 cut(s) 589
Bsp68I TCGCGA 1 cut(s) 82
BspACI CCGC 2 cut(s) 494, 1049
BspCNI CTCAG 3 cut(s) 182, 191, 1017
BspFNI CGCG 3 cut(s) 82, 162, 735
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 586, 750
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 2 cut(s) 402, 463
BspT107I GGYRCC 2 cut(s) 584, 748
BspTNI GGTCTC 1 cut(s) 941
BsrI ACTGG 2 cut(s) 413, 419
BssECI CCNNGG 2 cut(s) 451, 589
BssMI GATC 3 cut(s) 394, 455, 685
BssNI GRCGYC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 877
BssT1I CCWWGG 2 cut(s) 451, 589
Bst2BI CACGAG 1 cut(s) 877
Bst4CI ACNGT 2 cut(s) 711, 899
BstACI GRCGYC 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 631
BstC8I GCNNGC 3 cut(s) 84, 813, 1051
BstDEI CTNAG 6 cut(s) 169, 178, 438, 777, 1004, 1054
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 2 cut(s) 150, 688
BstFNI CGCG 3 cut(s) 82, 162, 735
BstH2I RGCGCY 2 cut(s) 509, 752
BstHHI GCGC 2 cut(s) 508, 751
BstKTI GATC 3 cut(s) 397, 458, 688
BstMAI GTCTC 1 cut(s) 941
BstMBI GATC 3 cut(s) 394, 455, 685
BstMWI GCNNNNNNNGC 2 cut(s) 503, 1055
BstSLI GKGCMC 1 cut(s) 878
BstSNI TACGTA 1 cut(s) 631
BstUI CGCG 3 cut(s) 82, 162, 735
BstV1I GCAGC 3 cut(s) 503, 565, 581
BstV2I GAAGAC 2 cut(s) 663, 844
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 150, 688
BtsI GCAGTG 2 cut(s) 69, 504
BtsIMutI CAGTG 2 cut(s) 69, 504
BtuMI TCGCGA 1 cut(s) 82
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 3 cut(s) 84, 813, 1051
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 508, 751
Cfr13I GGNCC 1 cut(s) 541
CseI GACGC 2 cut(s) 151, 168
Csp6I GTAC 5 cut(s) 373, 585, 787, 916, 1011
CviAII CATG 7 cut(s) 115, 226, 296, 590, 693, 808, 963
CviQI GTAC 5 cut(s) 373, 585, 787, 916, 1011
DdeI CTNAG 6 cut(s) 169, 178, 438, 777, 1004, 1054
DinI GGCGCC 1 cut(s) 750
DpnI GATC 3 cut(s) 396, 457, 687
DpnII GATC 3 cut(s) 394, 455, 685
DraI TTTAAA 1 cut(s) 523
Eco105I TACGTA 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 451, 589
Eco31I GGTCTC 1 cut(s) 941
Eco47I GGWCC 1 cut(s) 541
Eco47III AGCGCT 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 958
EcoT14I CCWWGG 2 cut(s) 451, 589
EcoT22I ATGCAT 1 cut(s) 280
EgeI GGCGCC 1 cut(s) 750
EheI GGCGCC 1 cut(s) 750
ErhI CCWWGG 2 cut(s) 451, 589
FaeI CATG 7 cut(s) 118, 229, 299, 593, 696, 811, 966
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 2 cut(s) 425, 934
FatI CATG 7 cut(s) 114, 225, 295, 589, 692, 807, 962
FauI CCCGC 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 2 cut(s) 165, 904
Fnu4HI GCNGC 4 cut(s) 492, 495, 554, 595
FokI GGATG 2 cut(s) 157, 695
Fsp4HI GCNGC 4 cut(s) 492, 495, 554, 595
FspBI CTAG 2 cut(s) 29, 266
GlaI GCGC 2 cut(s) 507, 750
GluI GCNGC 4 cut(s) 492, 495, 554, 595
GsuI CTGGAG 2 cut(s) 436, 888
HaeII RGCGCY 2 cut(s) 509, 752
HgaI GACGC 2 cut(s) 151, 168
HhaI GCGC 2 cut(s) 508, 751
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 7 cut(s) 118, 229, 299, 593, 696, 811, 966
Hin6I GCGC 2 cut(s) 506, 749
HinP1I GCGC 2 cut(s) 506, 749
HinfI GANTC 5 cut(s) 55, 292, 860, 892, 971
HphI GGTGA 3 cut(s) 337, 680, 992
Hpy166II GTNNAC 5 cut(s) 166, 787, 876, 905, 983
Hpy188I TCNGA 4 cut(s) 172, 181, 460, 1007
Hpy188III TCNNGA 6 cut(s) 52, 81, 296, 308, 719, 938
Hpy8I GTNNAC 5 cut(s) 166, 787, 876, 905, 983
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 711, 899
HpyCH4IV ACGT 3 cut(s) 19, 326, 630
HpyCH4V TGCA 7 cut(s) 278, 553, 570, 597, 811, 842, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 1055
HpyF3I CTNAG 6 cut(s) 169, 178, 438, 777, 1004, 1054
HpySE526I ACGT 3 cut(s) 19, 326, 630
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 7 cut(s) 118, 229, 299, 593, 696, 811, 966
HspAI GCGC 2 cut(s) 506, 749
KasI GGCGCC 1 cut(s) 748
KpnI GGTACC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 394, 455, 685
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 503, 565, 581
LweI GCATC 1 cut(s) 279
MaeI CTAG 2 cut(s) 29, 266
MaeII ACGT 3 cut(s) 19, 326, 630
MaeIII GTNAC 5 cut(s) 433, 649, 695, 799, 893
MalI GATC 3 cut(s) 396, 457, 687
MboI GATC 3 cut(s) 394, 455, 685
MboII GAAGA 6 cut(s) 311, 389, 668, 844, 1027, 1030
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 225, 878
MluCI AATT 9 cut(s) 109, 233, 303, 612, 755, 765, 827, 958, 1068
MluI ACGCGT 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 749
MlyI GAGTC 3 cut(s) 286, 901, 980
MmeI TCCRAC 2 cut(s) 309, 660
MnlI CCTC 5 cut(s) 50, 85, 385, 411, 1019
Mph1103I ATGCAT 1 cut(s) 280
MroXI GAANNNNTTC 2 cut(s) 303, 507
MseI TTAA 5 cut(s) 444, 522, 615, 953, 1071
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 494, 866
Mva1269I GAATGC 1 cut(s) 572
MvnI CGCG 3 cut(s) 82, 162, 735
MwoI GCNNNNNNNGC 2 cut(s) 503, 1055
NarI GGCGCC 1 cut(s) 749
NcoI CCATGG 1 cut(s) 589
NdeII GATC 3 cut(s) 394, 455, 685
NlaIII CATG 7 cut(s) 118, 229, 299, 593, 696, 811, 966
NlaIV GGNNCC 2 cut(s) 586, 750
NmuCI GTSAC 3 cut(s) 433, 695, 893
NruI TCGCGA 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 693
PagI TCATGA 1 cut(s) 295
PaqCI CACCTGC 1 cut(s) 833
PctI GAATGC 1 cut(s) 572
PdmI GAANNNNTTC 2 cut(s) 303, 507
PfeI GAWTC 2 cut(s) 55, 860
PflMI CCANNNNNTGG 2 cut(s) 408, 679
PkrI GCNGC 4 cut(s) 493, 496, 555, 596
PleI GAGTC 3 cut(s) 286, 900, 979
PluTI GGCGCC 1 cut(s) 752
PpsI GAGTC 3 cut(s) 286, 900, 979
Ppu21I YACGTR 1 cut(s) 631
Psp1406I AACGTT 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 586, 750
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 866
RruI TCGCGA 1 cut(s) 82
RsaI GTAC 5 cut(s) 374, 586, 788, 917, 1012
RsaNI GTAC 5 cut(s) 373, 585, 787, 916, 1011
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 5 cut(s) 444, 522, 615, 953, 1071
SatI GCNGC 4 cut(s) 492, 495, 554, 595
Sau3AI GATC 3 cut(s) 394, 455, 685
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 3 cut(s) 286, 901, 980
SduI GDGCHC 2 cut(s) 225, 878
SfaNI GCATC 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 750
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 693
SnaBI TACGTA 1 cut(s) 631
Sse9I AATT 9 cut(s) 109, 233, 303, 612, 755, 765, 827, 958, 1068
SsiI CCGC 2 cut(s) 494, 1049
SspDI GGCGCC 1 cut(s) 748
SspI AATATT 3 cut(s) 121, 132, 204
SspMI CTAG 2 cut(s) 29, 266
StyI CCWWGG 2 cut(s) 451, 589
TaaI ACNGT 2 cut(s) 711, 899
TaiI ACGT 3 cut(s) 22, 329, 633
TaqI TCGA 1 cut(s) 939
TasI AATT 9 cut(s) 109, 233, 303, 612, 755, 765, 827, 958, 1068
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 2 cut(s) 55, 860
Tru1I TTAA 5 cut(s) 444, 522, 615, 953, 1071
Tru9I TTAA 5 cut(s) 444, 522, 615, 953, 1071
TscAI CASTG 2 cut(s) 69, 504
TseFI GTSAC 3 cut(s) 433, 695, 893
TseI GCWGC 3 cut(s) 491, 553, 594
Tsp45I GTSAC 3 cut(s) 433, 695, 893
TspDTI ATGAA 6 cut(s) 131, 312, 756, 777, 900, 951
TspGWI ACGGA 2 cut(s) 171, 538
TspRI CASTG 2 cut(s) 69, 504
Van91I CCANNNNNTGG 2 cut(s) 408, 679
VneI GTGCAC 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 5 cut(s) 233, 303, 755, 827, 958
XmiI GTMKAC 2 cut(s) 165, 904
XmnI GAANNNNTTC 2 cut(s) 303, 507
XspI CTAG 2 cut(s) 29, 266
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.