Rroxscaffold_1G00065810

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014719
Physical Location & Seq
Reverse (-)
87391081 .. 87394147
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065810.1

Sequence Viewer

Length: 693 bp
ATGCTTGCCACCGACGAACTCCATCATCCCAACTCCTCAACCTCGCTTCACCTCGCCACCTCACTACATCCCTACGCCACCACTCGCCTCGCCAAATTGCGGACGAGCCGGCACCCTTTTAAAAGCCTCAACCGGATCCCATTGTCGGAAAGAACCAAAGCACGTCGCGGCACCACTACCTCCGTCGCCCTTGATCCAAGATGGACGAACGATCTGCCCAACCCTTTGGCCCTTGCACATTCTGCAAATCATCAATTGCTGCCAGGTCTGTCAATTGAAGCTAATGATTCCATGAATATTTTGCAAGCATTTGAGAACTGGATGAAAGAGCATGGACGCACTTACTCAAGCAGTGAGGAGAAGGCAAAGCGTTTTGCAATATTCAAGGAGGAGTTTGATCATATAGAAAACTTCAACAGCCAAGGGAAACATAGATTCACATTAGGCCTCAATGCATTCAGTGATCTGACTGATAAAGAGTTCGATGAGACATATGGTTGCACGACTGCTATACCAAACACAAACCCTAGCTCAGTCTCTTCTTTTAGCTATCAAGATTTTGAAATTGAGGATCTTCCCCAAAACTGGGACTGGAGGACACAAGGAGCTGTGACCAGTGTCAAGGACCAAGGAAAATGTGGTAAGAGAAGGAAATCCCTAAATTTTAACCAATTATTGGTTGTATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

230

Amino Acids

26.14

Weight (kDa)

7.85

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 104 - 161 1e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 111, 170
AccB7I CCANNNNNTGG 1 cut(s) 676
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 100, 168
AclWI GGATC 4 cut(s) 130, 143, 188, 579
AcsI RAATTY 1 cut(s) 661
AfiI CCNNNNNNNGG 5 cut(s) 99, 145, 585, 586, 676
AgsI TTSAA 4 cut(s) 278, 385, 415, 563
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 4 cut(s) 281, 531, 549, 608
AluI AGCT 4 cut(s) 281, 531, 549, 608
Alw26I GTCTC 2 cut(s) 482, 541
AlwI GGATC 4 cut(s) 130, 143, 188, 579
AoxI GGCC 2 cut(s) 228, 445
ApeKI GCWGC 1 cut(s) 259
ApoI RAATTY 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 229, 625
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 625
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 2 cut(s) 111, 170
BbvI GCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 30, 195
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 482, 541
BfaI CTAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 169, 260
BlsI GCNGC 2 cut(s) 170, 261
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 229, 625
BmiI GGNNCC 3 cut(s) 113, 137, 172
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 421, 628
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 145, 585, 586, 676
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 4 cut(s) 323, 590, 596, 615
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 421, 628
BseGI GGATG 3 cut(s) 25, 67, 327
BseLI CCNNNNNNNGG 5 cut(s) 99, 145, 585, 586, 676
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 4 cut(s) 323, 590, 596, 615
BseRI GAGGAG 3 cut(s) 25, 371, 404
BseXI GCAGC 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 230, 447
BshNI GGYRCC 2 cut(s) 111, 170
BsiSI CCGG 2 cut(s) 109, 133
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 5 cut(s) 99, 145, 585, 586, 676
BsmAI GTCTC 2 cut(s) 482, 541
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 2 cut(s) 230, 447
Bsp143I GATC 6 cut(s) 135, 193, 211, 397, 463, 571
BspACI CCGC 2 cut(s) 100, 168
BspANI GGCC 2 cut(s) 230, 447
BspCNI CTCAG 1 cut(s) 545
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 113, 137, 172
BspPI GGATC 4 cut(s) 130, 143, 188, 579
BspT107I GGYRCC 2 cut(s) 111, 170
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 4 cut(s) 323, 590, 596, 615
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 421, 628
BssMI GATC 6 cut(s) 135, 193, 211, 397, 463, 571
BssT1I CCWWGG 2 cut(s) 421, 628
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 6, 110, 306
BstDEI CTNAG 1 cut(s) 532
BstF5I GGATG 3 cut(s) 25, 67, 327
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 6 cut(s) 138, 196, 214, 400, 466, 574
BstMAI GTCTC 2 cut(s) 482, 541
BstMBI GATC 6 cut(s) 135, 193, 211, 397, 463, 571
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 264
BstPAI GACNNNNGTC 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 262
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 246
BstX2I RGATCY 2 cut(s) 135, 571
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 2 cut(s) 135, 571
BsuRI GGCC 2 cut(s) 230, 447
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 3 cut(s) 25, 67, 327
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 3 cut(s) 358, 466, 622
Cac8I GCNNGC 3 cut(s) 6, 110, 306
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 229, 625
CseI GACGC 1 cut(s) 345
CviAII CATG 2 cut(s) 292, 332
CviJI RGCY 9 cut(s) 108, 126, 230, 281, 420, 447, 531, 549, 608
CviKI_1 RGCY 9 cut(s) 108, 126, 230, 281, 420, 447, 531, 549, 608
DdeI CTNAG 1 cut(s) 532
DpnI GATC 6 cut(s) 137, 195, 213, 399, 465, 573
DpnII GATC 6 cut(s) 135, 193, 211, 397, 463, 571
DraI TTTAAA 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco130I CCWWGG 2 cut(s) 421, 628
Eco147I AGGCCT 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 2 cut(s) 421, 628
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 2 cut(s) 421, 628
FaeI CATG 2 cut(s) 295, 335
FaiI YATR 9 cut(s) 293, 333, 402, 404, 432, 493, 495, 512, 685
FaqI GGGAC 1 cut(s) 602
FatI CATG 2 cut(s) 291, 331
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 169, 260
FokI GGATG 3 cut(s) 12, 54, 334
Fsp4HI GCNGC 2 cut(s) 169, 260
FspBI CTAG 1 cut(s) 528
GluI GCNGC 2 cut(s) 169, 260
GsuI CTGGAG 1 cut(s) 613
HaeIII GGCC 2 cut(s) 230, 447
HapII CCGG 2 cut(s) 109, 133
HgaI GACGC 1 cut(s) 345
Hin1II CATG 2 cut(s) 295, 335
HinfI GANTC 2 cut(s) 287, 435
HpaII CCGG 2 cut(s) 109, 133
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 148, 468
Hpy188III TCNNGA 1 cut(s) 554
Hpy99I CGWCG 3 cut(s) 17, 168, 188
HpyAV CCTTC 2 cut(s) 355, 642
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 6 cut(s) 236, 245, 304, 377, 455, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 295, 335
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 135, 193, 211, 397, 463, 571
LmnI GCTCC 1 cut(s) 605
LpnPI CCDG 8 cut(s) 122, 146, 249, 276, 304, 571, 577, 628
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 610
MalI GATC 6 cut(s) 137, 195, 213, 399, 465, 573
MboI GATC 6 cut(s) 135, 193, 211, 397, 463, 571
MboII GAAGA 2 cut(s) 531, 566
MfeI CAATTG 2 cut(s) 254, 273
MflI RGATCY 2 cut(s) 135, 571
MluCI AATT 6 cut(s) 95, 254, 273, 564, 661, 671
MmeI TCCRAC 1 cut(s) 126
Mph1103I ATGCAT 1 cut(s) 457
MroNI GCCGGC 1 cut(s) 108
MseI TTAA 3 cut(s) 120, 666, 691
MspI CCGG 2 cut(s) 109, 133
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 2 cut(s) 254, 273
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 242
NaeI GCCGGC 1 cut(s) 110
NdeI CATATG 1 cut(s) 493
NdeII GATC 6 cut(s) 135, 193, 211, 397, 463, 571
NgoMIV GCCGGC 1 cut(s) 108
NlaIII CATG 2 cut(s) 295, 335
NlaIV GGNNCC 3 cut(s) 113, 137, 172
NmuCI GTSAC 1 cut(s) 610
NsiI ATGCAT 1 cut(s) 457
PceI AGGCCT 1 cut(s) 447
PctI GAATGC 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 287, 435
PflMI CCANNNNNTGG 1 cut(s) 676
PkrI GCNGC 2 cut(s) 170, 261
PshAI GACNNNNGTC 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 113, 137, 172
PspPI GGNCC 2 cut(s) 229, 625
PsuI RGATCY 2 cut(s) 135, 571
SaqAI TTAA 3 cut(s) 120, 666, 691
SatI GCNGC 2 cut(s) 169, 260
Sau3AI GATC 6 cut(s) 135, 193, 211, 397, 463, 571
Sau96I GGNCC 2 cut(s) 229, 625
ScrFI CCNGG 1 cut(s) 264
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 6 cut(s) 95, 254, 273, 564, 661, 671
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 2 cut(s) 100, 168
SspI AATATT 2 cut(s) 298, 381
SspMI CTAG 1 cut(s) 528
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 2 cut(s) 421, 628
TaiI ACGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 483
TasI AATT 6 cut(s) 95, 254, 273, 564, 661, 671
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 287, 435
Tru1I TTAA 3 cut(s) 120, 666, 691
Tru9I TTAA 3 cut(s) 120, 666, 691
TscAI CASTG 3 cut(s) 358, 466, 622
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 2 cut(s) 308, 338
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 358, 466, 622
Van91I CCANNNNNTGG 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.