Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Forward (+)

6949512 .. 6950766

Gene Structure 1255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGCCCGTACTACTGGAATTACAATTCCGACATCAGCTTGTTTCTTCACAACTTCACAAAATGGTTTTTCAAGTAAAAACTCTTGAACTAATATTATGCGTTGTCTTGATAGGAAGTTTAGCAGTGTCTAAAGCCTCGTCGCGAGCATTACTTTTTGAAGCTAATGATTCCATGAATATTTTGCAAGCATTTGAGAACTGGATGAAAGAGCATGGACGCACTTACTCAAGCAGTGAGGAGAAGGCAAAGCGTTTTGCAATATTCAAGGAGGAGTTTGATCATATAGAAAACTTCAACAGCCAAGGGAAACATAGATTCACATTAGGCCTCAATGCATTCAGTGATCTGACTGATAAAGAGTTCGATGAGACATATGGCTGCACGACTGCTATACCAAACACAAACCCTAGCTCAGTCTCTTCTTTTAGCTATCAAGATTTTGAAATTGAGGATCTTCCCCAAAACTGGGACTGGAGGACACAAGGAGCTGTGACCAGTGTCAAGGACCAAGGAAAATGTGGTTGTAGTTGGGCTTTTGCAATAGCAGCAGCAGTGGAAGGGCTCACCCCATTCTACAATAAACCTTATGGAAAACTTGTGAACTTGTCCGTGCAAGAACTTGTAGCCTGTAGTAAGCCGTATGGCACCAATGGCTGTAAAGGGGGTCAAGCGATTAATGCTATCAAGTACGTAAGGGATCATGGACTCGTAACTGAAGAAAAGTTTCCTTACCGGTTTGCTGACGACCAATCATGCGACACCGCGTTCGAATCTTCCCCTGATATAAAAATCTCTGGTTATGAAGCTGTGCCTGAGTTTGATGAAGTTGCTCTAGCCAAGGCTGTTTACCATCAACCAGTTGTAGTTGCGCATTCCGCCAGCATTAATTTTCGCCGATACAAAGGTGGTATTTTTTTAGATGCAGATGGGAAGTGTGCGAGAGGTAATATCAGCCACACTTCTACACTCGTTGGCTTCGGTACAACTCCACTTGGCGAAGAATATTGGATATTGAAGAATTCATGGAGCTCTTCTTGGGGTGTACATGGTTATATGAAAATTAATAGAAATAGTAAGAATAAGCGAGGTGTTTGTAACCTCGCAAAATTGCCAGTGTTCGCCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

377

Amino Acids

42.07

Weight (kDa)

6.8

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	65 - 122	2.3e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	153 - 372	1.5e-60	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	873
AccB1I	GGYRCC	1 cut(s)	647
AccII	CGCG	2 cut(s)	145, 767
AciI	CCGC	2 cut(s)	765, 879
AclWI	GGATC	2 cut(s)	462, 708
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	4 cut(s)	12, 692, 985, 1047
AfiI	CCNNNNNNNGG	2 cut(s)	468, 469
AgeI	ACCGGT	1 cut(s)	735
AgsI	TTSAA	7 cut(s)	74, 89, 161, 268, 298, 446, 1018
AluBI	AGCT	7 cut(s)	40, 164, 414, 432, 491, 809, 1032
AluI	AGCT	7 cut(s)	40, 164, 414, 432, 491, 809, 1032
Alw21I	GWGCWC	1 cut(s)	1034
Alw26I	GTCTC	2 cut(s)	365, 424
AlwI	GGATC	2 cut(s)	462, 708
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	381, 548, 551
ApoI	RAATTY	1 cut(s)	1021
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AseI	ATTAAT	3 cut(s)	678, 888, 1065
AsiGI	ACCGGT	1 cut(s)	735
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	559
AsuII	TTCGAA	1 cut(s)	771
AvaII	GGWCC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	892, 925
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	2 cut(s)	567, 1034
Bbv12I	GWGCWC	1 cut(s)	1034
BbvI	GCAGC	3 cut(s)	368, 560, 563
BccI	CCATC	2 cut(s)	861, 923
BceAI	ACGGC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	365, 424
BfaI	CTAG	2 cut(s)	411, 836
BfmI	CTRYAG	1 cut(s)	631
BisI	GCNGC	3 cut(s)	382, 549, 552
BlsI	GCNGC	3 cut(s)	383, 550, 553
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	649
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	478
BoxI	GACNNNNGTC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	304, 511, 840
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 469
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	7 cut(s)	21, 206, 473, 479, 498, 860, 1115
BseDI	CCNNGG	3 cut(s)	304, 511, 840
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	468, 469
BseMII	CTCAG	2 cut(s)	429, 807
BseNI	ACTGG	7 cut(s)	21, 206, 473, 479, 498, 860, 1115
BseRI	GAGGAG	2 cut(s)	254, 287
BseXI	GCAGC	3 cut(s)	368, 560, 563
BsgI	GTGCAG	1 cut(s)	367
Bsh1236I	CGCG	2 cut(s)	145, 767
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	647
BshTI	ACCGGT	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	1034
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	468, 469
BsmAI	GTCTC	2 cut(s)	365, 424
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	2 cut(s)	338, 874
BsnI	GGCC	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	771
Bsp1286I	GDGCHC	2 cut(s)	567, 1034
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp143I	GATC	4 cut(s)	280, 346, 454, 700
Bsp68I	TCGCGA	1 cut(s)	145
BspACI	CCGC	2 cut(s)	765, 879
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	428, 808
BspFNI	CGCG	2 cut(s)	145, 767
BspLI	GGNNCC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	462, 708
BspQI	GCTCTTC	1 cut(s)	1039
BspT104I	TTCGAA	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	7 cut(s)	21, 206, 473, 479, 498, 860, 1115
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	3 cut(s)	304, 511, 840
BssMI	GATC	4 cut(s)	280, 346, 454, 700
BssT1I	CCWWGG	3 cut(s)	304, 511, 840
Bst6I	CTCTTC	2 cut(s)	427, 1039
BstAUI	TGTACA	1 cut(s)	1045
BstBAI	YACGTR	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	771
BstC8I	GCNNGC	3 cut(s)	147, 189, 883
BstDEI	CTNAG	2 cut(s)	415, 816
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	145, 767
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	4 cut(s)	283, 349, 457, 703
BstMAI	GTCTC	2 cut(s)	365, 424
BstMBI	GATC	4 cut(s)	280, 346, 454, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 654, 680, 878
BstPAI	GACNNNNGTC	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	631
BstSNI	TACGTA	1 cut(s)	694
BstUI	CGCG	2 cut(s)	145, 767
BstV1I	GCAGC	3 cut(s)	368, 560, 563
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	3 cut(s)	132, 241, 561
BtsIMutI	CAGTG	6 cut(s)	132, 241, 349, 505, 561, 1122
BtuMI	TCGCGA	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	147, 189, 883
CfoI	GCGC	1 cut(s)	874
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	4 cut(s)	11, 691, 984, 1046
CspAI	ACCGGT	1 cut(s)	735
CviAII	CATG	6 cut(s)	175, 215, 704, 756, 1026, 1049
CviQI	GTAC	4 cut(s)	11, 691, 984, 1046
DdeI	CTNAG	2 cut(s)	415, 816
DpnI	GATC	4 cut(s)	282, 348, 456, 702
DpnII	GATC	4 cut(s)	280, 346, 454, 700
Eam1104I	CTCTTC	2 cut(s)	427, 1039
EarI	CTCTTC	2 cut(s)	427, 1039
EciI	GGCGGA	1 cut(s)	868
Ecl136II	GAGCTC	1 cut(s)	1032
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	304, 511, 840
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	2 cut(s)	567, 1034
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	1032
Eco57I	CTGAAG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	1032
EcoRI	GAATTC	1 cut(s)	1021
EcoT14I	CCWWGG	3 cut(s)	304, 511, 840
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	567, 1034
ErhI	CCWWGG	3 cut(s)	304, 511, 840
FaeI	CATG	6 cut(s)	178, 218, 707, 759, 1029, 1052
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	6 cut(s)	174, 214, 703, 755, 1025, 1048
FauNDI	CATATG	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	382, 549, 552
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	567, 1034
Fsp4HI	GCNGC	3 cut(s)	382, 549, 552
FspBI	CTAG	2 cut(s)	411, 836
FspI	TGCGCA	1 cut(s)	873
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	3 cut(s)	382, 549, 552
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	736
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	874
Hin1II	CATG	6 cut(s)	178, 218, 707, 759, 1029, 1052
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HinfI	GANTC	4 cut(s)	170, 318, 708, 773
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	604, 850, 1046
Hpy188I	TCNGA	2 cut(s)	32, 351
Hpy188III	TCNNGA	4 cut(s)	86, 109, 144, 437
Hpy8I	GTNNAC	3 cut(s)	604, 850, 1046
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	238, 554
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	7 cut(s)	187, 260, 338, 384, 542, 616, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 654, 680, 878
HpyF3I	CTNAG	2 cut(s)	415, 816
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	6 cut(s)	178, 218, 707, 759, 1029, 1052
HspAI	GCGC	1 cut(s)	872
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	280, 346, 454, 700
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	2 cut(s)	488, 1029
Lsp1109I	GCAGC	3 cut(s)	368, 560, 563
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	2 cut(s)	411, 836
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	3 cut(s)	493, 712, 1097
MalI	GATC	4 cut(s)	282, 348, 456, 702
MboI	GATC	4 cut(s)	280, 346, 454, 700
MboII	GAAGA	8 cut(s)	39, 414, 449, 731, 768, 1013, 1026, 1030
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	567, 1034
MluCI	AATT	7 cut(s)	20, 26, 447, 889, 1021, 1062, 1109
MlyI	GAGTC	1 cut(s)	702
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	9 cut(s)	148, 232, 265, 341, 445, 471, 938, 1082, 1112
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	3 cut(s)	678, 888, 1065
MspI	CCGG	1 cut(s)	736
Mva1269I	GAATGC	2 cut(s)	338, 874
MvnI	CGCG	2 cut(s)	145, 767
MwoI	GCNNNNNNNGC	4 cut(s)	548, 654, 680, 878
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	280, 346, 454, 700
NlaIII	CATG	6 cut(s)	178, 218, 707, 759, 1029, 1052
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	873
NsiI	ATGCAT	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	1039
PctI	GAATGC	2 cut(s)	338, 874
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	170, 318, 773
PinAI	ACCGGT	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	383, 550, 553
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	694
PshAI	GACNNNNGTC	1 cut(s)	500
PshBI	ATTAAT	3 cut(s)	678, 888, 1065
Psp124BI	GAGCTC	1 cut(s)	1034
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	145
RsaI	GTAC	4 cut(s)	12, 692, 985, 1047
RsaNI	GTAC	4 cut(s)	11, 691, 984, 1046
SacI	GAGCTC	1 cut(s)	1034
SapI	GCTCTTC	1 cut(s)	1039
SaqAI	TTAA	3 cut(s)	678, 888, 1065
SatI	GCNGC	3 cut(s)	382, 549, 552
Sau3AI	GATC	4 cut(s)	280, 346, 454, 700
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	702
SduI	GDGCHC	2 cut(s)	567, 1034
SfaNI	GCATC	1 cut(s)	913
SfcI	CTRYAG	1 cut(s)	631
SfuI	TTCGAA	1 cut(s)	771
SinI	GGWCC	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	7 cut(s)	20, 26, 447, 889, 1021, 1062, 1109
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	765, 879
SspI	AATATT	4 cut(s)	96, 181, 264, 1007
SspMI	CTAG	2 cut(s)	411, 836
SstI	GAGCTC	1 cut(s)	1034
StuI	AGGCCT	1 cut(s)	330
StyI	CCWWGG	3 cut(s)	304, 511, 840
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	366, 771
TasI	AATT	7 cut(s)	20, 26, 447, 889, 1021, 1062, 1109
TatI	WGTACW	1 cut(s)	1045
TfiI	GAWTC	3 cut(s)	170, 318, 773
Tru1I	TTAA	3 cut(s)	678, 888, 1065
Tru9I	TTAA	3 cut(s)	678, 888, 1065
TscAI	CASTG	6 cut(s)	132, 241, 349, 505, 561, 1122
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	381, 548, 551
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	7 cut(s)	17, 191, 221, 819, 840, 1014, 1073
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	6 cut(s)	132, 241, 349, 505, 561, 1122
VpaK11BI	GGWCC	1 cut(s)	508
VspI	ATTAAT	3 cut(s)	678, 888, 1065
XapI	RAATTY	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	411, 836
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.