Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00020

Orthogroup ID

OG0014719

Physical Location & Seq

Genomic Coordinates Forward (+)

155034 .. 159095

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTGGATGCGACTGCCATAACTTCATACGGATGACTGATATGATATGGGAATCCAGCAAGCAAAAACATGACAGAGCCGAGGACCGACTACGATGGACGCCGATCATGCAACATGCAAGACTTGATCGGAAGCAGGGAAGTTTAGCAGTGTCTAAAGCCTCGTCGCGAGCATTACTTTTTGAAGCTAATGATTCCATGAATATTTTGCAAGCATTTGAGAACTGGATGAAAGAGCATGGACGCACTTACTCAAGCAGTGAGGAGAAGGCAAAGCGTTTTGCAATATTCAAGGAGGAGTTTGATCATATAGAAAACTTCAACAGGCAAGGGAAACATAGATTCACATTAGGCCTCAATGCATTCAGTGATCTGACTGATAAAGAGTTCGATGAGACATATGGTTGCACGACTGCTATACCAACAAACACAAACCCTAGCTCAGTCTCTTCTTTTAGCTATCAAGATTTTGAAATTGAGGATCTTCCCCAAAACTGGGACTGGAGGACACAACGAGCTGTGACCAGTGTCAAGGACCAAGGAAAATGTGCAGCAGCAGTGGAAGGGCTCACCCCATTCTACAATAAACCTTATGGAAAACTTGTGAACTTGTCCATGCAAGAACTTGTAGCCTGTAGTAAGCCGTATGGCACCAATGGCTGTAAAGGGGGTCAAGCGATTAATGCTATCAAGTACGTAAGGGATCATGGACTCGTAACTGAAGAAAAGTTTCCTTACCGGTTTGCTGACGACCAATCATGCGACACCGCGTTCGAATCTTCCCCTGATATAAAAATCTCTGCTGAGGTTGATGCTAGAGCAACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

276

Amino Acids

31.4

Weight (kDa)

5.85

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	73 - 130	2.5e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	162 - 260	5e-21	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014719)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20390 FvH4_5g18392
pyrus_communis	pycom10g12240
rosa_chinensis	RchiOBHm_Chr5g0010531
rosa_laevigata	RLG00000031759 RLG00000034399
rosa_multiflora	Rmu_co8231115.1_g000001 Rmu_sc0006579.1_g000004 Rmu_sc0021314.1_g000001 Rmu_sc0021314.1_g000002
rosa_roxburghii	Rroxscaffold_1G00035160 Rroxscaffold_1G00065800 Rroxscaffold_1G00065810
rosa_samantha	Rh5AG082200 Rh5BG077100
rosa_wichuraiana	Rw0G000750 Rw0G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	650
AccII	CGCG	2 cut(s)	169, 770
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	2 cut(s)	489, 711
AcuI	CTGAAG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	2 cut(s)	495, 496
AgeI	ACCGGT	1 cut(s)	738
AgsI	TTSAA	4 cut(s)	185, 292, 322, 473
AluBI	AGCT	4 cut(s)	188, 441, 459, 518
AluI	AGCT	4 cut(s)	188, 441, 459, 518
Alw26I	GTCTC	2 cut(s)	389, 451
AlwI	GGATC	2 cut(s)	489, 711
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	551, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
AseI	ATTAAT	1 cut(s)	681
AsiGI	ACCGGT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	729
AspS9I	GGNCC	2 cut(s)	85, 535
AsuHPI	GGTGA	1 cut(s)	562
AsuII	TTCGAA	1 cut(s)	774
AvaII	GGWCC	2 cut(s)	85, 535
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	563, 566
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	389, 451
BfaI	CTAG	2 cut(s)	438, 816
BfmI	CTRYAG	1 cut(s)	634
BisI	GCNGC	2 cut(s)	552, 555
BlsI	GCNGC	2 cut(s)	553, 556
Bme18I	GGWCC	2 cut(s)	85, 535
BmgT120I	GGNCC	2 cut(s)	85, 535
BmiI	GGNNCC	1 cut(s)	652
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	505
BoxI	GACNNNNGTC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	697
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	81, 538
BsaWI	WCCGGW	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 496
Bse118I	RCCGGY	1 cut(s)	738
Bse1I	ACTGG	4 cut(s)	230, 500, 506, 525
BseDI	CCNNGG	2 cut(s)	81, 538
BseGI	GGATG	3 cut(s)	14, 39, 234
BseLI	CCNNNNNNNGG	2 cut(s)	495, 496
BseMII	CTCAG	2 cut(s)	456, 795
BseNI	ACTGG	4 cut(s)	230, 500, 506, 525
BseRI	GAGGAG	2 cut(s)	278, 311
BseXI	GCAGC	2 cut(s)	563, 566
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	169, 770
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	650
BshTI	ACCGGT	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	495, 496
BsmAI	GTCTC	2 cut(s)	389, 451
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
Bsp68I	TCGCGA	1 cut(s)	169
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	455, 796
BspFNI	CGCG	2 cut(s)	169, 770
BspLI	GGNNCC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	489, 711
BspT104I	TTCGAA	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	738
BsrI	ACTGG	4 cut(s)	230, 500, 506, 525
BssAI	RCCGGY	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	81, 538
BssMI	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	697
BstBI	TTCGAA	1 cut(s)	774
BstC8I	GCNNGC	3 cut(s)	62, 171, 213
BstDEI	CTNAG	2 cut(s)	442, 804
BstF5I	GGATG	3 cut(s)	14, 39, 234
BstFNI	CGCG	2 cut(s)	169, 770
BstKTI	GATC	6 cut(s)	108, 130, 307, 373, 484, 706
BstMAI	GTCTC	2 cut(s)	389, 451
BstMBI	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 657, 683
BstNSI	RCATGY	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	634
BstSNI	TACGTA	1 cut(s)	697
BstUI	CGCG	2 cut(s)	169, 770
BstV1I	GCAGC	2 cut(s)	563, 566
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	14, 39, 234
BtsI	GCAGTG	3 cut(s)	156, 265, 564
BtsIMutI	CAGTG	5 cut(s)	156, 265, 373, 532, 564
BtuMI	TCGCGA	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	62, 171, 213
Cfr10I	RCCGGY	1 cut(s)	738
Cfr13I	GGNCC	2 cut(s)	85, 535
CseI	GACGC	2 cut(s)	109, 252
Csp6I	GTAC	1 cut(s)	694
CspAI	ACCGGT	1 cut(s)	738
CviAII	CATG	8 cut(s)	71, 109, 116, 199, 239, 616, 707, 759
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	2 cut(s)	442, 804
DpnI	GATC	6 cut(s)	107, 129, 306, 372, 483, 705
DpnII	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco105I	TACGTA	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	538
Eco147I	AGGCCT	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	85, 535
Eco57I	CTGAAG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	8 cut(s)	74, 112, 119, 202, 242, 619, 710, 762
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	8 cut(s)	70, 108, 115, 198, 238, 615, 706, 758
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	552, 555
FokI	GGATG	3 cut(s)	21, 46, 241
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	2 cut(s)	552, 555
FspBI	CTAG	2 cut(s)	438, 816
GluI	GCNGC	2 cut(s)	552, 555
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	739
HgaI	GACGC	2 cut(s)	109, 252
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	8 cut(s)	74, 112, 119, 202, 242, 619, 710, 762
HinfI	GANTC	5 cut(s)	53, 194, 342, 711, 776
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	132, 375
Hpy188III	TCNNGA	2 cut(s)	168, 464
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	262, 557
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	8 cut(s)	112, 119, 211, 284, 362, 408, 551, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 657, 683
HpyF3I	CTNAG	2 cut(s)	442, 804
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	8 cut(s)	74, 112, 119, 202, 242, 619, 710, 762
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
Lsp1109I	GCAGC	2 cut(s)	563, 566
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	438, 816
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	520, 715
MalI	GATC	6 cut(s)	107, 129, 306, 372, 483, 705
MboI	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
MboII	GAAGA	4 cut(s)	441, 476, 734, 771
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	705
MnlI	CCTC	8 cut(s)	76, 172, 256, 289, 365, 472, 498, 799
Mph1103I	ATGCAT	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	362
MvnI	CGCG	2 cut(s)	169, 770
MwoI	GCNNNNNNNGC	3 cut(s)	109, 657, 683
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
NlaIII	CATG	8 cut(s)	74, 112, 119, 202, 242, 619, 710, 762
NlaIV	GGNNCC	1 cut(s)	652
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	520
NruI	TCGCGA	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	53, 194, 342, 776
PinAI	ACCGGT	1 cut(s)	738
PkrI	GCNGC	2 cut(s)	553, 556
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
Ppu21I	YACGTR	1 cut(s)	697
PshAI	GACNNNNGTC	1 cut(s)	527
PshBI	ATTAAT	1 cut(s)	681
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	2 cut(s)	85, 535
PsuI	RGATCY	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	169
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	2 cut(s)	552, 555
Sau3AI	GATC	6 cut(s)	105, 127, 304, 370, 481, 703
Sau96I	GGNCC	2 cut(s)	85, 535
SchI	GAGTC	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	570
SetI	ASST	7 cut(s)	190, 443, 461, 520, 592, 699, 810
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	774
SinI	GGWCC	2 cut(s)	85, 535
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SnaBI	TACGTA	1 cut(s)	697
Sse9I	AATT	1 cut(s)	474
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	768
SspI	AATATT	2 cut(s)	205, 288
SspMI	CTAG	2 cut(s)	438, 816
StuI	AGGCCT	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	538
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	2 cut(s)	390, 774
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	474
TfiI	GAWTC	4 cut(s)	53, 194, 342, 776
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	5 cut(s)	156, 265, 373, 532, 564
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	551, 554
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	4 cut(s)	16, 215, 245, 816
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	5 cut(s)	156, 265, 373, 532, 564
VpaK11BI	GGWCC	2 cut(s)	85, 535
VspI	ATTAAT	1 cut(s)	681
XceI	RCATGY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	2 cut(s)	438, 816
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.