pycom10g13270

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
16720118 .. 16722098
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
ATGGCTTCTTCCTCCTCTTCTCTCCCAATATTTCTTCCACTCACCCTCCTTTGGCTAATCTCACCCGCGCTTTCCCTCACCTGCACCTCCCAAACCTTCACCAACAACAAGCTCTACTCGAAATGCGCCGACCTCCCCGTCCTCAGCTCCTTCCTCCACTGGACCTACGACCCCGCCAACTCCACCCTCTCCATCGCCTTCATCGCCCCACCCTCTAAAACCGAAGGCTGGATCGCCTGGGCCATCAACCCGAAGGCTACCGGGATGGTTGGTTCCCAGACCCTCCTCGCCTACAAGAAGTCCGACGGCTCTATGGACGTTAAAACCCTCAGCATCAGCTCGTACAAGGAAATTGAGGAGTCGAAACTGTCGTTCGACGTGTGGGACACTGCCGCCGAGTCGTCCGGCGGAGTTTACAGGCTGTTTGCGAAGTTGAAGGTAGAGAAGAAGACGGTGAACCAGGTTTGGCAGGTGGGGCCCTCTGTTACCGATGGGTTTCCGGCTAAACACGACTTCCTGACGCCGAATCTTAACGCGAAAGGGACTCTGAGCTTGACCGGCGGCACCACCACCACAACCGCCAGCGGGGGTTCGAAGATGAAGAAGAGAAATATCCATGGAATTTTGAATGCTGTGAGTTGGGGACTGTTGTTTCCAATTGGAATCATCGTGGCAAGATACCTAAGGGCTTTTCCGTCTGCCGATCCAGCTTGGTTTTATCTTCATATATTCTGCCAGGTATCTGGTTATGCAATTGGTGTCGCCGGCTGGTCCACAGGAATTAAGCTCGGAAGTGAGTCCAAAGGGGTGGTTTACACCCATCACCGCAACATCGGAATCTCCCTGTTTGCCTTAGCAACTCTGCAGATTTTCGCATTGTTCTTGAGGCCGAAGAAGGAGCACAAGTTCAGGTTCTACTGGAACATCTACCACCACAGTCTCGGATACACGATTCTCGTCCTGGGCATTATAAATGTGTTCAAAGGCCTAGACATACTAAATCCTGCTAAGCATTGGAAATCCGCTTACATAATTGTGATCATTGCATTGGGCGCAATTGCATTGTTATTGGAAGCAATTACTTGGATTGTAGTCTTGAAGAGAAAGTCAAGTAAGTCCACCAAGCCGTATGATGGATTCAACAACGGACAAGGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

42.19

Weight (kDa)

9.69

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 185 1.9e-28 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 206 - 330 2.8e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 971
AarI CACCTGC 2 cut(s) 89, 460
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 2 cut(s) 89, 460
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 2 cut(s) 68, 536
AciI CCGC 9 cut(s) 66, 174, 393, 408, 561, 579, 585, 826, 1023
AclWI GGATC 2 cut(s) 239, 698
AcsI RAATTY 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 51, 228, 585, 1133
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 5 cut(s) 436, 628, 982, 1099, 1141
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 4 cut(s) 236, 459, 735, 960
AloI GAACNNNNNNTCC 4 cut(s) 256, 288, 890, 922
AluBI AGCT 6 cut(s) 112, 147, 339, 552, 710, 787
AluI AGCT 6 cut(s) 112, 147, 339, 552, 710, 787
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 1 cut(s) 944
AlwI GGATC 2 cut(s) 239, 698
AoxI GGCC 4 cut(s) 240, 476, 887, 985
ApaI GGGCCC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 621
AspLEI GCGC 3 cut(s) 70, 128, 1055
AspS9I GGNCC 5 cut(s) 162, 240, 476, 477, 771
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 6 cut(s) 34, 54, 70, 91, 466, 815
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 2 cut(s) 162, 771
AxyI CCTNAGG 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 903
BbvCI CCTCAGC 2 cut(s) 143, 329
BccI CCATC 6 cut(s) 200, 251, 259, 485, 828, 1127
BceAI ACGGC 2 cut(s) 322, 1111
BciT130I CCWGG 4 cut(s) 238, 461, 737, 962
BciVI GTATCC 1 cut(s) 938
BclI TGATCA 1 cut(s) 1038
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 944
BfaI CTAG 1 cut(s) 989
BfmI CTRYAG 1 cut(s) 863
BfuAI ACCTGC 2 cut(s) 89, 460
BfuI GTATCC 1 cut(s) 938
BisI GCNGC 2 cut(s) 393, 562
BlpI GCTNAGC 1 cut(s) 1008
BlsI GCNGC 2 cut(s) 394, 563
Bme1390I CCNGG 5 cut(s) 238, 262, 461, 737, 962
Bme18I GGWCC 2 cut(s) 162, 771
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 5 cut(s) 162, 240, 476, 477, 771
BmiI GGNNCC 4 cut(s) 274, 477, 478, 565
BmrFI CCNGG 5 cut(s) 238, 262, 461, 737, 962
BmsI GCATC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 455
Bpu10I CCTNAGC 3 cut(s) 143, 329, 853
Bpu1102I GCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 904
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 237, 616, 961
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 890, 920
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 228, 585, 1133
Bse118I RCCGGY 2 cut(s) 557, 764
Bse1I ACTGG 2 cut(s) 164, 923
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 1041
BseBI CCWGG 4 cut(s) 238, 461, 737, 962
BseDI CCNNGG 3 cut(s) 237, 616, 961
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 51, 228, 585, 1133
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 3 cut(s) 157, 343, 539
BseNI ACTGG 2 cut(s) 164, 923
BseRI GAGGAG 3 cut(s) 4, 275, 371
BseSI GKGCMC 1 cut(s) 480
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 68, 536
BshFI GGCC 4 cut(s) 242, 478, 889, 987
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 5 cut(s) 261, 405, 500, 558, 765
BslFI GGGAC 3 cut(s) 398, 556, 657
BslI CCNNNNNNNGG 4 cut(s) 51, 228, 585, 1133
BsmAI GTCTC 1 cut(s) 944
BsmFI GGGAC 3 cut(s) 398, 556, 657
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 4 cut(s) 242, 478, 889, 987
Bsp119I TTCGAA 1 cut(s) 593
Bsp120I GGGCCC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 480, 903
Bsp143I GATC 3 cut(s) 231, 703, 1038
Bsp1720I GCTNAGC 1 cut(s) 1008
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 9 cut(s) 66, 174, 393, 408, 561, 579, 585, 826, 1023
BspANI GGCC 4 cut(s) 242, 478, 889, 987
BspCNI CTCAG 3 cut(s) 156, 342, 540
BspFNI CGCG 2 cut(s) 68, 536
BspLI GGNNCC 4 cut(s) 274, 477, 478, 565
BspMAI CTGCAG 1 cut(s) 867
BspMI ACCTGC 2 cut(s) 89, 460
BspPI GGATC 2 cut(s) 239, 698
BspT104I TTCGAA 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 2 cut(s) 557, 764
BsrI ACTGG 2 cut(s) 164, 923
BssAI RCCGGY 2 cut(s) 557, 764
BssECI CCNNGG 3 cut(s) 237, 616, 961
BssMI GATC 3 cut(s) 231, 703, 1038
BssNI GRCGYC 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 4 cut(s) 238, 461, 737, 962
Bst4CI ACNGT 4 cut(s) 369, 454, 648, 938
Bst6I CTCTTC 3 cut(s) 22, 599, 1094
BstACI GRCGYC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 583, 766
BstDEI CTNAG 6 cut(s) 143, 329, 548, 683, 853, 1008
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 2 cut(s) 68, 536
BstHHI GCGC 3 cut(s) 70, 128, 1055
BstKTI GATC 3 cut(s) 234, 706, 1041
BstMAI GTCTC 1 cut(s) 944
BstMBI GATC 3 cut(s) 231, 703, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 203, 475, 558, 707, 1052
BstNI CCWGG 4 cut(s) 238, 461, 737, 962
BstSCI CCNGG 5 cut(s) 236, 260, 459, 735, 960
BstSFI CTRYAG 1 cut(s) 863
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 2 cut(s) 68, 536
BstV2I GAAGAC 1 cut(s) 455
BstXI CCANNNNNNTGG 2 cut(s) 743, 808
Bsu36I CCTNAGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 4 cut(s) 242, 478, 889, 987
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 2 cut(s) 178, 187
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 157, 387
BveI ACCTGC 2 cut(s) 89, 460
Cac8I GCNNGC 2 cut(s) 583, 766
CfoI GCGC 3 cut(s) 70, 128, 1055
Cfr10I RCCGGY 2 cut(s) 557, 764
Cfr13I GGNCC 5 cut(s) 162, 240, 476, 477, 771
CseI GACGC 1 cut(s) 529
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 617
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 6 cut(s) 143, 329, 548, 683, 853, 1008
DpnI GATC 3 cut(s) 233, 705, 1040
DpnII GATC 3 cut(s) 231, 703, 1038
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 3 cut(s) 22, 599, 1094
EarI CTCTTC 3 cut(s) 22, 599, 1094
EciI GGCGGA 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 162, 771
Eco81I CCTNAGG 1 cut(s) 683
EcoO109I RGGNCCY 2 cut(s) 476, 477
EcoRII CCWGG 4 cut(s) 236, 459, 735, 960
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 1 cut(s) 620
FaiI YATR 9 cut(s) 314, 618, 726, 728, 750, 971, 995, 1031, 1131
FaqI GGGAC 3 cut(s) 398, 556, 657
FatI CATG 1 cut(s) 616
FauI CCCGC 3 cut(s) 73, 181, 578
FbaI TGATCA 1 cut(s) 1038
Fnu4HI GCNGC 2 cut(s) 393, 562
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 393, 562
FspBI CTAG 1 cut(s) 989
GlaI GCGC 3 cut(s) 69, 127, 1054
GluI GCNGC 2 cut(s) 393, 562
HaeIII GGCC 4 cut(s) 242, 478, 889, 987
HapII CCGG 5 cut(s) 261, 405, 500, 558, 765
HgaI GACGC 1 cut(s) 529
HhaI GCGC 3 cut(s) 70, 128, 1055
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 620
Hin6I GCGC 3 cut(s) 68, 126, 1053
HinP1I GCGC 3 cut(s) 68, 126, 1053
HinfI GANTC 9 cut(s) 359, 398, 526, 544, 663, 797, 837, 952, 1137
HpaII CCGG 5 cut(s) 261, 405, 500, 558, 765
HphI GGTGA 6 cut(s) 34, 54, 70, 91, 466, 815
Hpy166II GTNNAC 5 cut(s) 415, 457, 774, 814, 1119
Hpy188I TCNGA 5 cut(s) 304, 549, 791, 836, 944
Hpy188III TCNNGA 3 cut(s) 517, 883, 1096
Hpy8I GTNNAC 5 cut(s) 415, 457, 774, 814, 1119
Hpy99I CGWCG 2 cut(s) 308, 380
HpyAV CCTTC 7 cut(s) 106, 160, 208, 218, 247, 430, 889
HpyCH4III ACNGT 4 cut(s) 369, 454, 648, 938
HpyCH4IV ACGT 2 cut(s) 318, 378
HpyCH4V TGCA 5 cut(s) 84, 752, 865, 1046, 1061
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 475, 558, 707, 1052
HpyF3I CTNAG 6 cut(s) 143, 329, 548, 683, 853, 1008
HpySE526I ACGT 2 cut(s) 318, 378
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 620
HspAI GCGC 3 cut(s) 68, 126, 1053
KroI GCCGGC 1 cut(s) 764
KroNI GCCGGC 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 1038
Kzo9I GATC 3 cut(s) 231, 703, 1038
LmnI GCTCC 2 cut(s) 152, 898
LweI GCATC 1 cut(s) 342
MabI ACCWGGT 1 cut(s) 459
MaeI CTAG 1 cut(s) 989
MaeII ACGT 2 cut(s) 318, 378
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 233, 705, 1040
MboI GATC 3 cut(s) 231, 703, 1038
MfeI CAATTG 3 cut(s) 657, 753, 1056
MhlI GDGCHC 2 cut(s) 480, 903
MluCI AATT 8 cut(s) 351, 621, 657, 753, 780, 1032, 1056, 1077
MlyI GAGTC 4 cut(s) 368, 407, 538, 806
MmeI TCCRAC 1 cut(s) 327
MroNI GCCGGC 1 cut(s) 764
MseI TTAA 3 cut(s) 321, 531, 783
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 1 cut(s) 585
MspI CCGG 5 cut(s) 261, 405, 500, 558, 765
MspR9I CCNGG 5 cut(s) 238, 262, 461, 737, 962
MunI CAATTG 3 cut(s) 657, 753, 1056
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 4 cut(s) 238, 461, 737, 962
MvnI CGCG 2 cut(s) 68, 536
MwoI GCNNNNNNNGC 5 cut(s) 203, 475, 558, 707, 1052
NaeI GCCGGC 1 cut(s) 766
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 616
NdeII GATC 3 cut(s) 231, 703, 1038
NgoMIV GCCGGC 1 cut(s) 764
NlaIII CATG 1 cut(s) 620
NlaIV GGNNCC 4 cut(s) 274, 477, 478, 565
NmeAIII GCCGAG 1 cut(s) 421
NspV TTCGAA 1 cut(s) 593
PaqCI CACCTGC 2 cut(s) 89, 460
PceI AGGCCT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 634
PdiI GCCGGC 1 cut(s) 766
PfeI GAWTC 5 cut(s) 526, 663, 837, 952, 1137
PkrI GCNGC 2 cut(s) 394, 563
PleI GAGTC 4 cut(s) 367, 406, 538, 805
PpsI GAGTC 4 cut(s) 367, 406, 538, 805
PsiI TTATAA 1 cut(s) 971
Psp6I CCWGG 4 cut(s) 236, 459, 735, 960
PspGI CCWGG 4 cut(s) 236, 459, 735, 960
PspN4I GGNNCC 4 cut(s) 274, 477, 478, 565
PspOMI GGGCCC 1 cut(s) 476
PspPI GGNCC 5 cut(s) 162, 240, 476, 477, 771
PstI CTGCAG 1 cut(s) 867
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 1034
SaqAI TTAA 3 cut(s) 321, 531, 783
SatI GCNGC 2 cut(s) 393, 562
Sau3AI GATC 3 cut(s) 231, 703, 1038
Sau96I GGNCC 5 cut(s) 162, 240, 476, 477, 771
SchI GAGTC 4 cut(s) 368, 407, 538, 806
ScrFI CCNGG 5 cut(s) 238, 262, 461, 737, 962
SduI GDGCHC 2 cut(s) 480, 903
SexAI ACCWGGT 1 cut(s) 459
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 863
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 2 cut(s) 162, 771
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 883
SmoI CTYRAG 1 cut(s) 883
Sse9I AATT 8 cut(s) 351, 621, 657, 753, 780, 1032, 1056, 1077
SseBI AGGCCT 1 cut(s) 987
SsiI CCGC 9 cut(s) 66, 174, 393, 408, 561, 579, 585, 826, 1023
SspI AATATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 989
StuI AGGCCT 1 cut(s) 987
StyD4I CCNGG 5 cut(s) 236, 260, 459, 735, 960
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 4 cut(s) 369, 454, 648, 938
TaiI ACGT 2 cut(s) 321, 381
TaqI TCGA 4 cut(s) 119, 362, 375, 593
TasI AATT 8 cut(s) 351, 621, 657, 753, 780, 1032, 1056, 1077
TauI GCSGC 2 cut(s) 395, 564
TfiI GAWTC 5 cut(s) 526, 663, 837, 952, 1137
Tru1I TTAA 3 cut(s) 321, 531, 783
Tru9I TTAA 3 cut(s) 321, 531, 783
TscAI CASTG 2 cut(s) 164, 394
TspDTI ATGAA 3 cut(s) 190, 614, 713
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 2 cut(s) 164, 394
VpaK11BI GGWCC 2 cut(s) 162, 771
XapI RAATTY 1 cut(s) 621
XspI CTAG 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.