pycom10g13420

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010118
Physical Location & Seq
Reverse (-)
16839662 .. 16840536
875 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGGCTGGTTTTGTTAGAACGAGATCGAAACGGGTCACTTACCCGCTCGATGACCGGGTGAAAGATCGACTAGTAGGCGGATACAGCTCCGGACTTCGTGACACCAGCAAAGGAAGCGAGCACTCCGGCGAAAACGACTCCCTCTCCGAGCTCGTCCACGACTTCCTCCACCACGACGAGTCGTCCGCGGCTGGGTTTCCCGACAACGAGTCCGACTCGGAACGAGTCGAATCGGGCTCCAATACGGACGCGATCGACTCCGTCCTCAAATCCGTTGCCGTTTCCGGAAATGCGGATTCGTACCTGAAGCTGCTCCGCTCTCACGTTTCCCAGGCAGCGGAGGCTTTCGCGTGTTTGAGGTCCAACGGCGGCGGAAGCAGCGAGTCCACTCTGCGGCGGAGCGTGATGTCGTTTCTGAGAGGATTGGGACACAATGCGGCGATCTGCAAGACGAAATGGACCTCCTCCGGCAACATCACCGCCGGGAGCTACGAGTTCATAGACGTCGTACCCGTCCCATCCGGCTCCTCCACGTGGCAGAGCAGCTCGGCCGTCGAGCCAGTACTCGCGGCTGCTGCAGCTTCTGCCGAGGGACTTCGTAGGCAGCTCGGAGGATCTGAAGCGGATCGTGCGGGTCACGAGCGACGCGGCGAAGAGATCGCTGAGGAGTACGGATCTCTCCGTGCCTCCGTGGCGGAAGAATCGTTACATGCAGAACAAGTGGTTCGGTCCGTACAAACGAACCGTGAATCCGATGACGGAGAAAGCCTACTCAAGAGAGTCGGCCATTTTTGCTCCTGTATCTGCAGCCCAATGCCGCTGGGTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

278

Amino Acids

29.53

Weight (kDa)

5.41

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 50 - 174 2.3e-21 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccBSI CCGCTC 2 cut(s) 46, 318
AccII CGCG 5 cut(s) 188, 251, 350, 569, 648
AccIII TCCGGA 2 cut(s) 89, 284
AclWI GGATC 3 cut(s) 622, 633, 682
AcoI YGGCCR 2 cut(s) 549, 784
AcuI CTGAAG 2 cut(s) 326, 639
AcvI CACGTG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 5 cut(s) 302, 510, 564, 671, 735
AfiI CCNNNNNNNGG 4 cut(s) 192, 337, 393, 534
AhdI GACNNNNNGTC 2 cut(s) 181, 208
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 330
AloI GAACNNNNNNTCC 2 cut(s) 734, 766
AluBI AGCT 7 cut(s) 87, 151, 310, 489, 546, 581, 607
AluI AGCT 7 cut(s) 87, 151, 310, 489, 546, 581, 607
Alw21I GWGCWC 2 cut(s) 123, 153
AlwI GGATC 3 cut(s) 622, 633, 682
AlwNI CAGNNNCTG 1 cut(s) 584
Aor13HI TCCGGA 2 cut(s) 89, 284
AoxI GGCC 2 cut(s) 549, 784
ApeKI GCWGC 9 cut(s) 310, 335, 378, 543, 572, 575, 578, 604, 807
AspS9I GGNCC 3 cut(s) 360, 459, 729
AsuC2I CCSGG 2 cut(s) 56, 484
AsuHPI GGTGA 2 cut(s) 70, 469
AvaII GGWCC 3 cut(s) 360, 459, 729
BanII GRGCYC 2 cut(s) 153, 239
BarI GAAGNNNNNNTAC 2 cut(s) 690, 722
BauI CACGAG 1 cut(s) 638
BbrPI CACGTG 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 123, 153
BbvCI CCTCAGC 1 cut(s) 663
BbvI GCAGC 9 cut(s) 297, 347, 390, 555, 559, 562, 590, 616, 819
BccI CCATC 1 cut(s) 526
BceAI ACGGC 3 cut(s) 263, 382, 536
BciT130I CCWGG 1 cut(s) 332
BciVI GTATCC 1 cut(s) 74
BcnI CCSGG 2 cut(s) 56, 484
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 576, 805
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 692
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 3 cut(s) 56, 332, 484
Bme18I GGWCC 3 cut(s) 360, 459, 729
BmeRI GACNNNNNGTC 2 cut(s) 181, 208
BmgT120I GGNCC 3 cut(s) 360, 459, 729
BmiI GGNNCC 2 cut(s) 238, 526
BmrFI CCNGG 3 cut(s) 56, 332, 484
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 2 cut(s) 56, 484
BsaAI YACGTR 1 cut(s) 534
BsaHI GRCGYC 1 cut(s) 504
BsaJI CCNNGG 4 cut(s) 186, 330, 588, 690
BsaWI WCCGGW 2 cut(s) 89, 284
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 337, 393, 534
Bse1I ACTGG 1 cut(s) 560
BseAI TCCGGA 2 cut(s) 89, 284
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 4 cut(s) 186, 330, 588, 690
BseGI GGATG 1 cut(s) 518
BseLI CCNNNNNNNGG 4 cut(s) 192, 337, 393, 534
BseMII CTCAG 2 cut(s) 407, 654
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 3 cut(s) 454, 517, 680
BseX3I CGGCCG 1 cut(s) 549
BseXI GCAGC 9 cut(s) 297, 347, 390, 555, 559, 562, 590, 616, 819
BseYI CCCAGC 2 cut(s) 191, 820
Bsh1236I CGCG 5 cut(s) 188, 251, 350, 569, 648
Bsh1285I CGRYCG 2 cut(s) 255, 552
BshFI GGCC 2 cut(s) 551, 786
BsiEI CGRYCG 2 cut(s) 255, 552
BsiHKAI GWGCWC 2 cut(s) 123, 153
BsiSI CCGG 7 cut(s) 55, 90, 126, 285, 468, 483, 522
BslFI GGGAC 3 cut(s) 441, 500, 606
BslI CCNNNNNNNGG 4 cut(s) 192, 337, 393, 534
BsmFI GGGAC 3 cut(s) 441, 500, 606
BsnI GGCC 2 cut(s) 551, 786
Bsp1286I GDGCHC 3 cut(s) 123, 153, 239
Bsp13I TCCGGA 2 cut(s) 89, 284
Bsp143I GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
BspANI GGCC 2 cut(s) 551, 786
BspCNI CTCAG 2 cut(s) 408, 655
BspEI TCCGGA 2 cut(s) 89, 284
BspFNI CGCG 5 cut(s) 188, 251, 350, 569, 648
BspLI GGNNCC 2 cut(s) 238, 526
BspMAI CTGCAG 2 cut(s) 580, 809
BspPI GGATC 3 cut(s) 622, 633, 682
BsrBI CCGCTC 2 cut(s) 46, 318
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 4 cut(s) 186, 330, 588, 690
BssMI GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
BssNI GRCGYC 1 cut(s) 504
BssSI CACGAG 1 cut(s) 638
Bst2BI CACGAG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 504
BstAPI GCANNNNNTGC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 416, 663
BstDSI CCRYGG 2 cut(s) 186, 690
BstF5I GGATG 1 cut(s) 518
BstFNI CGCG 5 cut(s) 188, 251, 350, 569, 648
BstKTI GATC 8 cut(s) 26, 67, 255, 444, 617, 628, 660, 677
BstMBI GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
BstMCI CGRYCG 2 cut(s) 255, 552
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 3 cut(s) 54, 330, 482
BstSFI CTRYAG 2 cut(s) 576, 805
BstUI CGCG 5 cut(s) 188, 251, 350, 569, 648
BstV1I GCAGC 9 cut(s) 297, 347, 390, 555, 559, 562, 590, 616, 819
BstX2I RGATCY 2 cut(s) 614, 674
BstYI RGATCY 2 cut(s) 614, 674
BstZI CGGCCG 1 cut(s) 549
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 551, 786
BtgI CCRYGG 2 cut(s) 186, 690
BtsCI GGATG 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 119
CaiI CAGNNNCTG 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 360, 459, 729
Cfr42I CCGCGG 1 cut(s) 189
CpoI CGGWCCG 1 cut(s) 729
CseI GACGC 2 cut(s) 257, 654
Csp6I GTAC 5 cut(s) 301, 509, 563, 670, 734
CspI CGGWCCG 1 cut(s) 729
CviAII CATG 1 cut(s) 710
CviQI GTAC 5 cut(s) 301, 509, 563, 670, 734
DdeI CTNAG 2 cut(s) 416, 663
DpnI GATC 8 cut(s) 25, 66, 254, 443, 616, 627, 659, 676
DpnII GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
DriI GACNNNNNGTC 2 cut(s) 181, 208
EaeI YGGCCR 2 cut(s) 549, 784
EagI CGGCCG 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 648
Eam1105I GACNNNNNGTC 2 cut(s) 181, 208
EarI CTCTTC 1 cut(s) 648
EciI GGCGGA 4 cut(s) 93, 387, 412, 710
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 153, 239
Eco47I GGWCC 3 cut(s) 360, 459, 729
Eco52I CGGCCG 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 326, 639
Eco72I CACGTG 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 153, 239
FaeI CATG 1 cut(s) 713
FaiI YATR 2 cut(s) 500, 711
FaqI GGGAC 3 cut(s) 441, 500, 606
FatI CATG 1 cut(s) 709
FauI CCCGC 2 cut(s) 51, 625
FokI GGATG 1 cut(s) 505
FriOI GRGCYC 2 cut(s) 153, 239
FspBI CTAG 1 cut(s) 71
GsaI CCCAGC 2 cut(s) 195, 824
HaeIII GGCC 2 cut(s) 551, 786
HapII CCGG 7 cut(s) 55, 90, 126, 285, 468, 483, 522
HgaI GACGC 2 cut(s) 257, 654
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 1 cut(s) 713
HpaII CCGG 7 cut(s) 55, 90, 126, 285, 468, 483, 522
HphI GGTGA 2 cut(s) 70, 469
Hpy166II GTNNAC 2 cut(s) 157, 387
Hpy188I TCNGA 7 cut(s) 148, 214, 220, 417, 611, 619, 754
Hpy188III TCNNGA 6 cut(s) 90, 98, 200, 285, 638, 775
Hpy8I GTNNAC 2 cut(s) 157, 387
Hpy99I CGWCG 4 cut(s) 179, 509, 557, 648
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4IV ACGT 3 cut(s) 324, 504, 533
HpyCH4V TGCA 4 cut(s) 447, 578, 713, 807
HpyF3I CTNAG 2 cut(s) 416, 663
HpySE526I ACGT 3 cut(s) 324, 504, 533
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 1 cut(s) 713
Kpn2I TCCGGA 2 cut(s) 89, 284
KspI CCGCGG 1 cut(s) 189
Kzo9I GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
LmnI GCTCC 7 cut(s) 92, 242, 318, 399, 486, 530, 800
Lsp1109I GCAGC 9 cut(s) 297, 347, 390, 555, 559, 562, 590, 616, 819
MaeI CTAG 1 cut(s) 71
MaeII ACGT 3 cut(s) 324, 504, 533
MaeIII GTNAC 4 cut(s) 34, 98, 635, 705
MalI GATC 8 cut(s) 25, 66, 254, 443, 616, 627, 659, 676
MbiI CCGCTC 2 cut(s) 46, 318
MboI GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
MboII GAAGA 2 cut(s) 665, 710
MflI RGATCY 2 cut(s) 614, 674
MhlI GDGCHC 3 cut(s) 123, 153, 239
MlyI GAGTC 8 cut(s) 131, 188, 209, 218, 234, 251, 392, 789
MmeI TCCRAC 2 cut(s) 237, 387
MroI TCCGGA 2 cut(s) 89, 284
MspA1I CMGCKG 3 cut(s) 188, 338, 820
MspI CCGG 7 cut(s) 55, 90, 126, 285, 468, 483, 522
MspR9I CCNGG 3 cut(s) 56, 332, 484
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 5 cut(s) 188, 251, 350, 569, 648
NciI CCSGG 2 cut(s) 56, 484
NdeII GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
NlaIII CATG 1 cut(s) 713
NlaIV GGNNCC 2 cut(s) 238, 526
NmeAIII GCCGAG 2 cut(s) 527, 613
NmuCI GTSAC 3 cut(s) 34, 98, 635
NspI RCATGY 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 4 cut(s) 230, 296, 701, 749
PflFI GACNNNGTC 1 cut(s) 260
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 8 cut(s) 131, 187, 209, 217, 233, 251, 391, 788
PmaCI CACGTG 1 cut(s) 534
PmlI CACGTG 1 cut(s) 534
PpsI GAGTC 8 cut(s) 131, 187, 209, 217, 233, 251, 391, 788
Ppu21I YACGTR 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 330
PspCI CACGTG 1 cut(s) 534
PspFI CCCAGC 2 cut(s) 191, 820
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 238, 526
PspPI GGNCC 3 cut(s) 360, 459, 729
PstI CTGCAG 2 cut(s) 580, 809
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 2 cut(s) 614, 674
PsyI GACNNNGTC 1 cut(s) 260
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 5 cut(s) 302, 510, 564, 671, 735
RsaNI GTAC 5 cut(s) 301, 509, 563, 670, 734
Rsr2I CGGWCCG 1 cut(s) 729
RsrII CGGWCCG 1 cut(s) 729
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 189
Sau3AI GATC 8 cut(s) 23, 64, 252, 441, 614, 625, 657, 674
Sau96I GGNCC 3 cut(s) 360, 459, 729
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 8 cut(s) 131, 188, 209, 218, 234, 251, 392, 789
ScrFI CCNGG 3 cut(s) 56, 332, 484
SduI GDGCHC 3 cut(s) 123, 153, 239
SfcI CTRYAG 2 cut(s) 576, 805
Sfr303I CCGCGG 1 cut(s) 189
SgrBI CCGCGG 1 cut(s) 189
SinI GGWCC 3 cut(s) 360, 459, 729
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SpeI ACTAGT 1 cut(s) 70
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 54, 330, 482
TaaI ACNGT 1 cut(s) 746
TaiI ACGT 3 cut(s) 327, 507, 536
TaqI TCGA 6 cut(s) 26, 48, 67, 228, 255, 555
TaqII GACCGA 1 cut(s) 717
TatI WGTACW 1 cut(s) 562
TauI GCSGC 7 cut(s) 191, 372, 397, 440, 572, 651, 820
TfiI GAWTC 4 cut(s) 230, 296, 701, 749
TseFI GTSAC 3 cut(s) 34, 98, 635
TseI GCWGC 9 cut(s) 310, 335, 378, 543, 572, 575, 578, 604, 807
Tsp45I GTSAC 3 cut(s) 34, 98, 635
TspDTI ATGAA 1 cut(s) 487
TspGWI ACGGA 8 cut(s) 250, 260, 262, 671, 679, 687, 721, 774
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 3 cut(s) 360, 459, 729
XceI RCATGY 1 cut(s) 713
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.