pycom10g24700

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008048
Physical Location & Seq
Reverse (-)
26489584 .. 26490640
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGACTCAGACCAGGAGGATCTTCACCTTTGTGCTGAGGCTGCTGGCCTTGGCTGCTACTGTTTCTGCCACCATAGTTATGGTCACCAGCCACGACTCTACCAGGGTCTTGAACTTGACCTTCAAGGCCAAATTCAGCGATTCCCCGACTTTCATGTACTTTGTGATTGTGGAGGCAATTGTAAGTGGATACAACCTTATAATCCTGCTTCTTTCTTCGAAGGGTTCACTGTGGCGCATTGTTATCATCCTAGATGTGGTTGCAGCTCTTCTTCTTACTTCAAGCATGTCAGCGGCCCTGGCGATAGGTCAAGTGGGGAAGAAAGGGAACACTCACGCTGGTTGGCTGCCAATTTGTGGACAAGTGTCCAAGTTTTGCAACCATGTCAATGGGGCTCTTGTTGCTGGCATCCTTGCAGCAATATTTTACTATGTGCTTAATCTATTTACTCTTTACAATGCTCTTAATCCTCTCTTCGTGGTAAAACCTAGTTAA

Protein Analysis

165

Amino Acids

17.78

Weight (kDa)

9.88

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 5 - 142 2.3e-39 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 356
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 256, 356
AgsI TTSAA 3 cut(s) 112, 124, 282
AjnI CCWGG 3 cut(s) 11, 101, 297
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 26
AoxI GGCC 3 cut(s) 45, 126, 294
ApeKI GCWGC 5 cut(s) 40, 53, 263, 346, 416
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 16, 76
AsuII TTCGAA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 5 cut(s) 27, 40, 275, 333, 428
BciT130I CCWGG 3 cut(s) 13, 103, 299
BciVI GTATCC 1 cut(s) 182
BfaI CTAG 2 cut(s) 251, 489
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 6 cut(s) 41, 54, 264, 294, 347, 417
BlsI GCNGC 6 cut(s) 42, 55, 265, 295, 348, 418
Bme1390I CCNGG 3 cut(s) 13, 103, 299
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 3 cut(s) 13, 103, 299
BmsI GCATC 1 cut(s) 417
BoxI GACNNNNGTC 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 48, 102, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 356
BseBI CCWGG 3 cut(s) 13, 103, 299
BseDI CCNNGG 3 cut(s) 48, 102, 297
BseGI GGATG 2 cut(s) 246, 408
BseLI CCNNNNNNNGG 2 cut(s) 256, 356
BseMII CTCAG 2 cut(s) 20, 26
BseXI GCAGC 5 cut(s) 27, 40, 275, 333, 428
BshFI GGCC 3 cut(s) 47, 128, 296
BslI CCNNNNNNNGG 2 cut(s) 256, 356
BsnI GGCC 3 cut(s) 47, 128, 296
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 47, 128, 296
BspCNI CTCAG 2 cut(s) 19, 27
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 48, 102, 297
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 13, 103, 299
Bst4CI ACNGT 2 cut(s) 61, 231
Bst6I CTCTTC 2 cut(s) 273, 479
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 45, 406
BstDEI CTNAG 2 cut(s) 6, 35
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 246, 408
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 4 cut(s) 40, 53, 299, 401
BstNI CCWGG 3 cut(s) 13, 103, 299
BstNSI RCATGY 1 cut(s) 289
BstPAI GACNNNNGTC 1 cut(s) 364
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 3 cut(s) 11, 101, 297
BstV1I GCAGC 5 cut(s) 27, 40, 275, 333, 428
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 2 cut(s) 79, 389
BstYI RGATCY 1 cut(s) 18
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 3 cut(s) 47, 128, 296
BtsCI GGATG 2 cut(s) 246, 408
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 45, 406
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 157
CviAII CATG 3 cut(s) 154, 286, 383
CviJI RGCY 9 cut(s) 40, 47, 53, 90, 128, 266, 296, 346, 395
CviKI_1 RGCY 9 cut(s) 40, 47, 53, 90, 128, 266, 296, 346, 395
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 6, 35
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 273, 479
EarI CTCTTC 2 cut(s) 273, 479
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 11, 101, 297
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 157, 289, 386
FaiI YATR 7 cut(s) 74, 80, 155, 200, 287, 384, 432
FatI CATG 3 cut(s) 153, 285, 382
Fnu4HI GCNGC 6 cut(s) 41, 54, 264, 294, 347, 417
FokI GGATG 2 cut(s) 233, 395
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 6 cut(s) 41, 54, 264, 294, 347, 417
FspBI CTAG 2 cut(s) 251, 489
GlaI GCGC 1 cut(s) 236
GluI GCNGC 6 cut(s) 41, 54, 264, 294, 347, 417
HaeIII GGCC 3 cut(s) 47, 128, 296
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 157, 289, 386
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 3 cut(s) 4, 95, 140
HphI GGTGA 2 cut(s) 16, 76
Hpy166II GTNNAC 2 cut(s) 227, 359
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 227, 359
HpyAV CCTTC 2 cut(s) 130, 214
HpyCH4III ACNGT 2 cut(s) 61, 231
HpyCH4V TGCA 3 cut(s) 263, 378, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 53, 299, 401
HpyF3I CTNAG 2 cut(s) 6, 35
Hsp92II CATG 3 cut(s) 157, 289, 386
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 273
Lsp1109I GCAGC 5 cut(s) 27, 40, 275, 333, 428
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 251, 489
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 6 cut(s) 13, 207, 260, 263, 331, 466
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 3 cut(s) 131, 177, 351
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 4 cut(s) 9, 30, 166, 480
MseI TTAA 3 cut(s) 438, 465, 493
MslI CAYNNNNRTG 3 cut(s) 29, 77, 387
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 13, 103, 299
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 3 cut(s) 13, 103, 299
MwoI GCNNNNNNNGC 4 cut(s) 40, 53, 299, 401
NdeII GATC 1 cut(s) 18
NlaIII CATG 3 cut(s) 157, 289, 386
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 6 cut(s) 42, 55, 265, 295, 348, 418
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshAI GACNNNNGTC 1 cut(s) 364
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 3 cut(s) 11, 101, 297
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 3 cut(s) 11, 101, 297
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 3 cut(s) 29, 77, 387
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 438, 465, 493
SatI GCNGC 6 cut(s) 41, 54, 264, 294, 347, 417
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 13, 103, 299
SduI GDGCHC 1 cut(s) 397
SetI ASST 6 cut(s) 29, 122, 198, 268, 310, 490
SfaNI GCATC 1 cut(s) 417
SfuI TTCGAA 1 cut(s) 218
SmiMI CAYNNNNRTG 3 cut(s) 29, 77, 387
Sse9I AATT 3 cut(s) 131, 177, 351
SsiI CCGC 1 cut(s) 293
SspI AATATT 1 cut(s) 423
SspMI CTAG 2 cut(s) 251, 489
StyD4I CCNGG 3 cut(s) 11, 101, 297
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 61, 231
TaqI TCGA 1 cut(s) 218
TasI AATT 3 cut(s) 131, 177, 351
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 438, 465, 493
Tru9I TTAA 3 cut(s) 438, 465, 493
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 5 cut(s) 40, 53, 263, 346, 416
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 356
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 2 cut(s) 251, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.