Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000110

Orthogroup ID

OG0005555

Physical Location & Seq

Genomic Coordinates Reverse (-)

23549 .. 24075

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom110g00030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGGCTGTGACGTCTTCCTGCAAAGATGGTGGGATGAAGATGCAGATGGACAATGGCAAGTACGTAAGGTACACGCCGGAGCAAGTGGAAGCTTTAGAGCGGTTGTACCATGAGTGCCCGAAGCCGAGCTCCATGCGCCGCCAGCAGCTCATCCGCGAGTGCCCTATCCTCTCCAACATCGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAACCGCAGAGAGAAGCAGCGGAAGGAGGCGTCGAGATTGCAGACTGTGAACAGAAAGCTGACGGCGATGAATAAGCTTCTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCTCAGCTGGTCTATGAGAACAGCTATTTCCGCCAGCACACACAAAATGTAAAACCATTCACCTCCATCCTTTACAACATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

138

Amino Acids

16.4

Weight (kDa)

9.74

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005555)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00030
rosa_chinensis	RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951
rosa_multiflora	Rmu_sc0006010.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030400
rosa_rugosa	Rorug06G0249500 Rorug06G0249500 Rorug06G0249600
rosa_samantha	Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	103, 142, 157, 217, 232, 358
AcyI	GRCGYC	2 cut(s)	14, 242
AfaI	GTAC	3 cut(s)	65, 74, 110
AgsI	TTSAA	1 cut(s)	410
AluBI	AGCT	7 cut(s)	95, 132, 151, 271, 289, 334, 351
AluI	AGCT	7 cut(s)	95, 132, 151, 271, 289, 334, 351
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	148, 229
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	379
BaeGI	GKGCMC	2 cut(s)	122, 167
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	160, 241
BccI	CCATC	4 cut(s)	23, 43, 289, 401
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	3 cut(s)	142, 149, 230
BlsI	GCNGC	3 cut(s)	143, 150, 231
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	14, 242
BseGI	GGATG	3 cut(s)	42, 153, 393
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	2 cut(s)	122, 167
BseXI	GCAGC	2 cut(s)	160, 241
Bsh1236I	CGCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	122, 134, 167
Bsp143I	GATC	2 cut(s)	195, 307
BspACI	CCGC	6 cut(s)	103, 142, 157, 217, 232, 358
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	103
BssMI	GATC	2 cut(s)	195, 307
BssNI	GRCGYC	2 cut(s)	14, 242
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	2 cut(s)	14, 242
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	146, 362
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	42, 153, 393
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	198, 310
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	195, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 145, 357
BstSLI	GKGCMC	2 cut(s)	122, 167
BstSNI	TACGTA	1 cut(s)	67
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	160, 241
BstV2I	GAAGAC	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	42, 153, 393
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	146, 362
CfoI	GCGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	64, 73, 109
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	2 cut(s)	113, 136
CviQI	GTAC	3 cut(s)	64, 73, 109
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	197, 309
DpnII	GATC	2 cut(s)	195, 307
EciI	GGCGGA	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	116, 139
FaiI	YATR	3 cut(s)	114, 137, 342
FatI	CATG	2 cut(s)	112, 135
Fnu4HI	GCNGC	3 cut(s)	142, 149, 230
FokI	GGATG	3 cut(s)	49, 140, 380
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	142, 149, 230
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	142, 149, 230
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	2 cut(s)	14, 242
Hin1II	CATG	2 cut(s)	116, 139
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	2 cut(s)	93, 287
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	75, 262
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	75, 262
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	14, 66
HpyCH4V	TGCA	4 cut(s)	24, 46, 253, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 145, 357
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	14, 66
Hsp92I	GRCGYC	2 cut(s)	14, 242
Hsp92II	CATG	2 cut(s)	116, 139
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	195, 307
LmnI	GCTCC	2 cut(s)	82, 137
LpnPI	CCDG	6 cut(s)	34, 93, 158, 308, 320, 374
Lsp1109I	GCAGC	2 cut(s)	160, 241
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	2 cut(s)	14, 66
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	197, 309
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	2 cut(s)	195, 307
MboII	GAAGA	2 cut(s)	9, 52
MhlI	GDGCHC	3 cut(s)	122, 134, 167
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	182, 232, 292, 400
MspA1I	CMGCKG	2 cut(s)	232, 334
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	138, 145, 357
NdeII	GATC	2 cut(s)	195, 307
NlaIII	CATG	2 cut(s)	116, 139
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	143, 150, 231
Ppu21I	YACGTR	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	65, 74, 110
RsaNI	GTAC	3 cut(s)	64, 73, 109
SacI	GAGCTC	1 cut(s)	134
SatI	GCNGC	3 cut(s)	142, 149, 230
Sau3AI	GATC	2 cut(s)	195, 307
SduI	GDGCHC	3 cut(s)	122, 134, 167
SfaNI	GCATC	1 cut(s)	33
SnaBI	TACGTA	1 cut(s)	67
SsiI	CCGC	6 cut(s)	103, 142, 157, 217, 232, 358
SstI	GAGCTC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	17, 69
TaqI	TCGA	2 cut(s)	183, 245
TauI	GCSGC	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	148, 229
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	53, 296
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.