Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005555

Physical Location & Seq

Genomic Coordinates Reverse (-)

59042989 .. 59043321

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGTTCAAAACTTCAAACTTGTTCCTATGACTCTAAAGAGTTTGAAACTGATTTACTTCGCGCAGCTCATGATGAGAGTCATGCACAAGATGCGTCGTGGGGGTTGTCTAACATAAGGGCTGTTGACGAAGCAGTTTTATATGTTTTTTATCTGCAATATTGTCAATCTGTTCAAGTCTCTCCTTATATGTGGTGGCATAAAATTTGGTTCAAGTCTCTCTATGCAGATTTTGTTGAATCACAAGTTTCACATTTTCAAATACTTGTCTTAAATCTACTGATTTTGTTTACAAGAACTGAATTTTTACAGTGTAGGACCTATTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

110

Amino Acids

13.07

Weight (kDa)

5.4

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005555)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00030
rosa_chinensis	RchiOBHm_Chr1g0322901 RchiOBHm_Chr2g0111751 RchiOBHm_Chr2g0164871 RchiOBHm_Chr5g0028331 RchiOBHm_Chr6g0258951
rosa_multiflora	Rmu_sc0006010.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030400
rosa_rugosa	Rorug06G0249500 Rorug06G0249500 Rorug06G0249600
rosa_samantha	Rh1BG244300 Rh2CG232400 Rh2CG295900 Rh2DG332800 Rh3AG253200 Rh3AG309200 Rh3AG310800 Rh3BG355500 Rh3CG342500 Rh4AG132400 Rh5AG356000 Rh5BG260900 Rh5BG263300 Rh5BG491200 Rh5CG515000 Rh5DG386200 Rh6BG167200 Rh6BG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	204, 302
AgsI	TTSAA	7 cut(s)	9, 17, 47, 176, 214, 239, 260
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	184, 222
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	204, 302
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	184, 222
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	184, 222
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	2 cut(s)	184, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	329
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	317
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	318
CseI	GACGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	71, 83
CviJI	RGCY	2 cut(s)	68, 122
CviKI_1	RGCY	2 cut(s)	68, 122
Eco47I	GGWCC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	318
FaeI	CATG	2 cut(s)	74, 86
FatI	CATG	2 cut(s)	70, 82
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	66
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	74, 86
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	32, 79, 239
Hpy166II	GTNNAC	2 cut(s)	127, 291
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	127, 291
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	86, 157, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	74, 86
HspAI	GCGC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	82
MluCI	AATT	2 cut(s)	204, 302
MlyI	GAGTC	2 cut(s)	26, 88
MseI	TTAA	1 cut(s)	272
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	74, 86
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	2 cut(s)	26, 87
PpsI	GAGTC	2 cut(s)	26, 87
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	2 cut(s)	26, 88
SetI	ASST	2 cut(s)	70, 323
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	318
Sse9I	AATT	2 cut(s)	204, 302
SspI	AATATT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	312
TasI	AATT	2 cut(s)	204, 302
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	2 cut(s)	204, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.