Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Reverse (-)

39570805 .. 39580777

Gene Structure 9973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGAGTGGCGCTGTGCTTGTTGCTGTTGCCGCTGCTGTTGGGAACTTATTGCAAGGATGGGACAACGCTACAATCGCAGCTTCCGTTTTGTACATAAAGAGGGAGTTCAATTTGGAGAGTCAACCTGCAGTGGAAGGGCTGATAGTGGCTATGTCACTTATAGGGGCAACTTTGGTTACAACATGCTCAGGAGCTGTAGCGGACTGGATAGGCCGCCGTCCTATGCTTATAATCTCATCCGTGCTTTACTTTCTTAGTGGTATCGTAATGTTATGGGCTCCCAATGTTTATATCCTTCTCTTGGCTAGGCTTTTAGATGGATTGGGGATTGGTTTGGCAGTTACCCTTGTCCCGCTTTATATATCTGAGACAGCTCCACCTGAAATAAGGGGATCATTGAATACCCTTCCGCAGTTCACTGGCTCTGGTGGGATGTTCTTGTCTTATTGTATGGTTTTCGTGATGTCCTTGACGGAGGCACCAAGTTGGAGGTTGATGCTTGGGGTTTTAACTATTCCGTCCCTTGTTTATTTTGCATTGACTGTATTTTTCTTGCCCGAGTCTCCACGGTGGCTAGTGAGTAAGGGACGGATGCTTGAGGCAAAGAAAGTTTTACAGAGGCTGCGCGGCAGAGAAGACGTCTCTGGTGAGATGGCTTTGCTTGTTGAGGGTCTTGGAGTTGGGGGTGAGACATCTTTCGAGGAGTACATAATTGGTCCGGACAATGACCTCGTTGGTGACCATGAGTTATCTGTTGACAAGGATAAAATCAAATTATATGGGACTGAACAAGGTCAATCATGGGTTGCCAGACCTGTGACTGGACAAAGCACTATCGGCCTTGTGTCCCGGCATGGGAGCATGGCAAGTAAAAGCGGGCTTGTTGATCCTCTTGTCACACTCTTCGGCAGTGTTCATGAAAGGCTCCCTGATACAGGAAGCAAGGGCAGTATGCTTTTCCCACACTTTGGCAGCATGTTCAGTGTGGGAGGGAATCAACCCAGGCACGAAGAGTGGGATGAGGAGAGCCTTGCACCCAGAGAAGGCGATGACTATGCATCCGATGCAGGTGGCGGTGGCGATTCAGATGACAATTTGCATAGTCCATTGATCTCGCGTCAGACAACAAGCATTGAAAAGGGCATGGGCCCAACTAACCACGGAAGCCTTGTTAGCATGAGAAACAACAGTCTCCTAGGTGGCGATCCAGCCAGTAGCACTGGGATTGGTGGCGGTTGGCAGCTAGCATGGAAATGGTCTGAGAGAGATGGCCAAGATGGGCATAAGGAAGGAGGATTTAAAAGAATTTATTTGCACCAAGAAGGTGTCCCAATACCTGGTGGGTCTATTGTTTCAATACCTGGTGGCGATGTACCAGCAGATAGTGAGTTCATCCAGGCTTCTGCTTTGGTGAGCCAACCGGCTCTTTATTCCAGAGATCTTATCCAACAACATCATCCAGTTGGACCAGCAATGGTTCACCCAGCTGCAGCTTCTCGTAAAGGGACAACTTGGAGCGATCTTTTCGAACCAGGAGTCAAGCATGCTTTGGTTGTTGGTGTCGGAATTCAAATACTTCAGCAGTTCTCCGGCATAAATGGGGTTCTCTACTACACACCTCAAATTCTTGAGCAGGCCGGTGTTGGAGTGCTTCTTTCAAACCTTGGTCTTAGCTCAGCTTCTGCATCTCTGCTTATTAGTGGATTGACAACCTTATTGATGCTTCCTAGTATTGCTGTTGCCATGAGGCTCATGGATATCTCTGGCAGAAGGACCTTACTGCTCACCACAATCCCCATCTTGATACTTTCTCTCGTGATCCTAGTCCTTGGAAGCCTTGTGAATTTCGGTAGCGTTGTGAATGCAGCAATCTCAACTGGTAGCGTTGTGCTCTACTTCTGTTCCTTTGTGATGGGGTTCGGACCAGTCCCCAACATTCTCTGTGCGGAAATCTTCCCTACCCGAGTACGAGGTCTCTGCATTGCCATCTGTGCCCTCACGTTTTGGATTGGCGACATCATCGTCACCTACTCCCTCCCGGTGCTGCTCAAATCCATCGGCCTTTCTGGCGTTTTTGGTATGTACGCTGTAGTGTGCGTCATTGCTTGGATTTTTGTTTTCATGAAAGTTCCGGAAACCAAAGGCATGCCCCTTGAAGTTATCACCGAGTTCTTCTCTGTTGGTGCAAAGCAGGCTGCAGCTGCCAAGGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

738

Amino Acids

78.46

Weight (kDa)

5.46

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 223	9.4e-52	Sugar (and other) transporter
MFS_1	PF07690	13 - 198	8e-19	Major Facilitator Superfamily
Sugar_tr	PF00083	499 - 725	9.6e-40	Sugar (and other) transporter
MFS_1	PF07690	551 - 714	3.9e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AarI	CACCTGC	1 cut(s)	1058
AasI	GACNNNNNNGTC	1 cut(s)	2021
AatII	GACGTC	1 cut(s)	642
Acc36I	ACCTGC	2 cut(s)	133, 1058
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	2 cut(s)	968, 1337
AccII	CGCG	2 cut(s)	627, 1117
AccIII	TCCGGA	2 cut(s)	718, 2131
AclWI	GGATC	4 cut(s)	400, 881, 1199, 1813
AcoI	YGGCCR	1 cut(s)	1270
AcsI	RAATTY	4 cut(s)	1305, 1566, 1623, 1843
AcuI	CTGAAG	1 cut(s)	1562
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	5 cut(s)	92, 707, 1374, 1968, 2084
AfiI	CCNNNNNNNGG	7 cut(s)	301, 821, 855, 935, 968, 1043, 1337
AgsI	TTSAA	7 cut(s)	109, 400, 1136, 1356, 1571, 1659, 2156
AjnI	CCWGG	5 cut(s)	1001, 1336, 1360, 1395, 1531
AluBI	AGCT	9 cut(s)	80, 194, 374, 1243, 1487, 1493, 1674, 1679, 2201
AluI	AGCT	9 cut(s)	80, 194, 374, 1243, 1487, 1493, 1674, 1679, 2201
Alw21I	GWGCWC	1 cut(s)	1893
Alw26I	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1979
AlwI	GGATC	4 cut(s)	400, 881, 1199, 1813
AlwNI	CAGNNNCTG	3 cut(s)	194, 622, 1682
Ama87I	CYCGRG	2 cut(s)	557, 1962
Aor13HI	TCCGGA	2 cut(s)	718, 2131
AoxI	GGCC	6 cut(s)	211, 838, 1147, 1270, 1635, 2059
ApaI	GGGCCC	1 cut(s)	1151
ApoI	RAATTY	4 cut(s)	1305, 1566, 1623, 1843
ArsI	GACNNNNNNTTYG	2 cut(s)	1521, 1553
AspA2I	CCTAGG	1 cut(s)	1195
AspLEI	GCGC	2 cut(s)	11, 627
AspS9I	GGNCC	6 cut(s)	716, 1147, 1148, 1466, 1773, 1922
AsuC2I	CCSGG	2 cut(s)	850, 2039
AsuHPI	GGTGA	8 cut(s)	659, 698, 749, 1423, 1472, 1777, 2017, 2155
AsuII	TTCGAA	1 cut(s)	1527
AsuNHI	GCTAGC	1 cut(s)	1243
AvaI	CYCGRG	2 cut(s)	557, 1962
AvaII	GGWCC	4 cut(s)	716, 1466, 1773, 1922
AvrII	CCTAGG	1 cut(s)	1195
BaeGI	GKGCMC	2 cut(s)	1151, 1996
BalI	TGGCCA	1 cut(s)	1272
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	280, 1151
BauI	CACGAG	1 cut(s)	1814
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	1893
BccI	CCATC	9 cut(s)	51, 311, 646, 1262, 1271, 1805, 1906, 1994, 2063
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	4 cut(s)	1037, 1071, 1959, 1993
BciT130I	CCWGG	5 cut(s)	1003, 1338, 1362, 1397, 1533
BcnI	CCSGG	2 cut(s)	850, 2039
BcoDI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1979
BfaI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1728, 1823
BfmI	CTRYAG	5 cut(s)	126, 195, 1488, 2088, 2196
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	133, 1058
BglI	GCCNNNNNGGC	1 cut(s)	2067
BglII	AGATCT	1 cut(s)	1438
BlnI	CCTAGG	1 cut(s)	1195
BlpI	GCTNAGC	1 cut(s)	1675
Bme1390I	CCNGG	7 cut(s)	850, 1003, 1338, 1362, 1397, 1533, 2039
Bme18I	GGWCC	4 cut(s)	716, 1466, 1773, 1922
BmeT110I	CYCGRG	2 cut(s)	557, 1962
BmgT120I	GGNCC	6 cut(s)	716, 1147, 1148, 1466, 1773, 1922
BmiI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BmrFI	CCNGG	7 cut(s)	850, 1003, 1338, 1362, 1397, 1533, 2039
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	6 cut(s)	486, 582, 1054, 1067, 1694, 1710
BmtI	GCTAGC	1 cut(s)	1247
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	2159, 2191
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	1675
Bpu14I	TTCGAA	1 cut(s)	1527
BpuEI	CTTGAG	2 cut(s)	617, 1649
BpuMI	CCSGG	2 cut(s)	850, 2039
BsaHI	GRCGYC	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	1979
BsaJI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1663, 1828, 2205
BsaWI	WCCGGW	2 cut(s)	718, 2131
Bsc4I	CCNNNNNNNGG	7 cut(s)	301, 821, 855, 935, 968, 1043, 1337
Bse118I	RCCGGY	2 cut(s)	1420, 1637
Bse1I	ACTGG	8 cut(s)	209, 424, 826, 1212, 1225, 1460, 1882, 1925
Bse3DI	GCAATG	3 cut(s)	1479, 1980, 2100
BseAI	TCCGGA	2 cut(s)	718, 2131
BseBI	CCWGG	5 cut(s)	1003, 1338, 1362, 1397, 1533
BseDI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1663, 1828, 2205
BseGI	GGATG	8 cut(s)	62, 236, 438, 597, 1024, 1058, 1392, 1456
BseLI	CCNNNNNNNGG	7 cut(s)	301, 821, 855, 935, 968, 1043, 1337
BseMI	GCAATG	3 cut(s)	1479, 1980, 2100
BseMII	CTCAG	4 cut(s)	201, 357, 1251, 1689
BseNI	ACTGG	8 cut(s)	209, 424, 826, 1212, 1225, 1460, 1882, 1925
BseRI	GAGGAG	2 cut(s)	716, 1037
BseSI	GKGCMC	2 cut(s)	1151, 1996
BseYI	CCCAGC	1 cut(s)	1483
Bsh1236I	CGCG	2 cut(s)	627, 1117
BshFI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1637, 2061
BshNI	GGYRCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	1893
BsiHKCI	CYCGRG	2 cut(s)	557, 1962
BsiSI	CCGG	7 cut(s)	719, 850, 1421, 1590, 1638, 2039, 2132
BslFI	GGGAC	9 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1519, 1913
BslI	CCNNNNNNNGG	7 cut(s)	301, 821, 855, 935, 968, 1043, 1337
BsmAI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1979
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	9 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1519, 1913
BsmI	GAATGC	1 cut(s)	1867
BsnI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1637, 2061
Bso31I	GGTCTC	1 cut(s)	1979
BsoBI	CYCGRG	2 cut(s)	557, 1962
Bsp119I	TTCGAA	1 cut(s)	1527
Bsp120I	GGGCCC	1 cut(s)	1147
Bsp1286I	GDGCHC	4 cut(s)	280, 1151, 1893, 1996
Bsp13I	TCCGGA	2 cut(s)	718, 2131
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
Bsp1720I	GCTNAGC	1 cut(s)	1675
BspANI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1637, 2061
BspCNI	CTCAG	4 cut(s)	200, 358, 1252, 1688
BspEI	TCCGGA	2 cut(s)	718, 2131
BspFNI	CGCG	2 cut(s)	627, 1117
BspHI	TCATGA	2 cut(s)	916, 2121
BspLI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BspMAI	CTGCAG	3 cut(s)	130, 1492, 2200
BspMI	ACCTGC	2 cut(s)	133, 1058
BspOI	GCTAGC	1 cut(s)	1247
BspPI	GGATC	4 cut(s)	400, 881, 1199, 1813
BspT104I	TTCGAA	1 cut(s)	1527
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	1979
BsrDI	GCAATG	3 cut(s)	1479, 1980, 2100
BsrFI	RCCGGY	2 cut(s)	1420, 1637
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	8 cut(s)	209, 424, 826, 1212, 1225, 1460, 1882, 1925
BssAI	RCCGGY	2 cut(s)	1420, 1637
BssECI	CCNNGG	7 cut(s)	566, 1001, 1159, 1195, 1663, 1828, 2205
BssMI	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	1814
BssT1I	CCWWGG	4 cut(s)	1195, 1663, 1828, 2205
Bst2BI	CACGAG	1 cut(s)	1814
Bst2UI	CCWGG	5 cut(s)	1003, 1338, 1362, 1397, 1533
Bst4CI	ACNGT	3 cut(s)	544, 570, 1190
Bst6I	CTCTTC	2 cut(s)	908, 1005
BstACI	GRCGYC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	1527
BstC8I	GCNNGC	6 cut(s)	878, 1245, 1545, 1635, 2147, 2193
BstDEI	CTNAG	6 cut(s)	187, 254, 366, 1260, 1670, 1675
BstDSI	CCRYGG	2 cut(s)	566, 1159
BstEII	GGTNACC	1 cut(s)	737
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	8 cut(s)	62, 236, 438, 597, 1024, 1058, 1392, 1456
BstFNI	CGCG	2 cut(s)	627, 1117
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 627
BstKTI	GATC	7 cut(s)	395, 889, 1113, 1207, 1441, 1522, 1821
BstMAI	GTCTC	6 cut(s)	362, 567, 646, 683, 1196, 1979
BstMBI	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 74, 837, 1064, 1173, 1991, 2067, 2192, 2201
BstNI	CCWGG	5 cut(s)	1003, 1338, 1362, 1397, 1533
BstNSI	RCATGY	4 cut(s)	186, 979, 1547, 2149
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	7 cut(s)	848, 1001, 1336, 1360, 1395, 1531, 2037
BstSFI	CTRYAG	5 cut(s)	126, 195, 1488, 2088, 2196
BstSLI	GKGCMC	2 cut(s)	1151, 1996
BstUI	CGCG	2 cut(s)	627, 1117
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	1438
BstYI	RGATCY	1 cut(s)	1438
BsuRI	GGCC	6 cut(s)	213, 840, 1149, 1272, 1637, 2061
BtgI	CCRYGG	2 cut(s)	566, 1159
BtgZI	GCGATG	2 cut(s)	1062, 1383
BtsCI	GGATG	8 cut(s)	62, 236, 438, 597, 1024, 1058, 1392, 1456
BtsI	GCAGTG	2 cut(s)	135, 916
BtsIMutI	CAGTG	5 cut(s)	135, 417, 916, 988, 1218
BveI	ACCTGC	2 cut(s)	133, 1058
Cac8I	GCNNGC	6 cut(s)	878, 1245, 1545, 1635, 2147, 2193
CaiI	CAGNNNCTG	3 cut(s)	194, 622, 1682
CciI	TCATGA	2 cut(s)	916, 2121
CfoI	GCGC	2 cut(s)	11, 627
Cfr10I	RCCGGY	2 cut(s)	1420, 1637
Cfr13I	GGNCC	6 cut(s)	716, 1147, 1148, 1466, 1773, 1922
CseI	GACGC	2 cut(s)	1106, 2086
CsiI	ACCWGGT	2 cut(s)	1336, 1360
Csp6I	GTAC	5 cut(s)	91, 706, 1373, 1967, 2083
CviQI	GTAC	5 cut(s)	91, 706, 1373, 1967, 2083
DdeI	CTNAG	6 cut(s)	187, 254, 366, 1260, 1670, 1675
DpnI	GATC	7 cut(s)	394, 888, 1112, 1206, 1440, 1521, 1820
DpnII	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
DraI	TTTAAA	1 cut(s)	1300
DrdI	GACNNNNNNGTC	1 cut(s)	2021
DseDI	GACNNNNNNGTC	1 cut(s)	2021
EaeI	YGGCCR	1 cut(s)	1270
Eam1104I	CTCTTC	2 cut(s)	908, 1005
EarI	CTCTTC	2 cut(s)	908, 1005
Eco130I	CCWWGG	4 cut(s)	1195, 1663, 1828, 2205
Eco24I	GRGCYC	2 cut(s)	280, 1151
Eco31I	GGTCTC	1 cut(s)	1979
Eco32I	GATATC	1 cut(s)	1759
Eco47I	GGWCC	4 cut(s)	716, 1466, 1773, 1922
Eco57I	CTGAAG	1 cut(s)	1562
Eco88I	CYCGRG	2 cut(s)	557, 1962
Eco91I	GGTNACC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	1773
EcoO65I	GGTNACC	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	1566
EcoRII	CCWGG	5 cut(s)	1001, 1336, 1360, 1395, 1531
EcoRV	GATATC	1 cut(s)	1759
EcoT14I	CCWWGG	4 cut(s)	1195, 1663, 1828, 2205
EcoT22I	ATGCAT	1 cut(s)	1060
EcoT38I	GRGCYC	2 cut(s)	280, 1151
ErhI	CCWWGG	4 cut(s)	1195, 1663, 1828, 2205
Esp3I	CGTCTC	1 cut(s)	646
FaqI	GGGAC	9 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1519, 1913
FauI	CCCGC	2 cut(s)	360, 869
FokI	GGATG	8 cut(s)	69, 223, 445, 604, 1031, 1045, 1379, 1443
FriOI	GRGCYC	2 cut(s)	280, 1151
FspBI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1728, 1823
GlaI	GCGC	2 cut(s)	10, 626
GsaI	CCCAGC	1 cut(s)	1487
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	213, 840, 1149, 1272, 1637, 2061
HapII	CCGG	7 cut(s)	719, 850, 1421, 1590, 1638, 2039, 2132
HgaI	GACGC	2 cut(s)	1106, 2086
HhaI	GCGC	2 cut(s)	11, 627
Hin1I	GRCGYC	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	9, 625
HinP1I	GCGC	2 cut(s)	9, 625
HincII	GTYRAC	2 cut(s)	122, 757
HindII	GTYRAC	2 cut(s)	122, 757
HinfI	GANTC	5 cut(s)	118, 560, 994, 1082, 1536
HpaII	CCGG	7 cut(s)	719, 850, 1421, 1590, 1638, 2039, 2132
HphI	GGTGA	8 cut(s)	659, 698, 749, 1423, 1472, 1777, 2017, 2155
Hpy166II	GTNNAC	4 cut(s)	122, 417, 757, 1480
Hpy188I	TCNGA	7 cut(s)	367, 1063, 1087, 1122, 1261, 1565, 1922
Hpy8I	GTNNAC	4 cut(s)	122, 417, 757, 1480
HpyAV	CCTTC	7 cut(s)	128, 305, 416, 1037, 1283, 1316, 1764
HpyCH4III	ACNGT	3 cut(s)	544, 570, 1190
HpyCH4IV	ACGT	2 cut(s)	639, 2000
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 74, 837, 1064, 1173, 1991, 2067, 2192, 2201
HpyF3I	CTNAG	6 cut(s)	187, 254, 366, 1260, 1670, 1675
HpySE526I	ACGT	2 cut(s)	639, 2000
Hsp92I	GRCGYC	1 cut(s)	639
HspAI	GCGC	2 cut(s)	9, 625
Kpn2I	TCCGGA	2 cut(s)	718, 2131
Kzo9I	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
LmnI	GCTCC	6 cut(s)	191, 283, 379, 858, 930, 1515
LweI	GCATC	6 cut(s)	486, 582, 1054, 1067, 1694, 1710
MabI	ACCWGGT	2 cut(s)	1336, 1360
MaeI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1728, 1823
MaeII	ACGT	2 cut(s)	639, 2000
MaeIII	GTNAC	7 cut(s)	153, 175, 340, 737, 817, 895, 2023
MalI	GATC	7 cut(s)	394, 888, 1112, 1206, 1440, 1521, 1820
MboI	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
MboII	GAAGA	5 cut(s)	647, 895, 1022, 1945, 2164
MflI	RGATCY	1 cut(s)	1438
MhlI	GDGCHC	4 cut(s)	280, 1151, 1893, 1996
MlsI	TGGCCA	1 cut(s)	1272
MluCI	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1566, 1623, 1843, 2212
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	3 cut(s)	127, 569, 1545
MmeI	TCCRAC	5 cut(s)	467, 1444, 1471, 1543, 1624
Mox20I	TGGCCA	1 cut(s)	1272
Mph1103I	ATGCAT	1 cut(s)	1060
MroI	TCCGGA	2 cut(s)	718, 2131
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	2 cut(s)	509, 1299
MslI	CAYNNNNRTG	1 cut(s)	1252
Msp20I	TGGCCA	1 cut(s)	1272
MspA1I	CMGCKG	3 cut(s)	32, 1487, 2201
MspI	CCGG	7 cut(s)	719, 850, 1421, 1590, 1638, 2039, 2132
MspR9I	CCNGG	7 cut(s)	850, 1003, 1338, 1362, 1397, 1533, 2039
Mva1269I	GAATGC	1 cut(s)	1867
MvaI	CCWGG	5 cut(s)	1003, 1338, 1362, 1397, 1533
MvnI	CGCG	2 cut(s)	627, 1117
MwoI	GCNNNNNNNGC	9 cut(s)	29, 74, 837, 1064, 1173, 1991, 2067, 2192, 2201
NciI	CCSGG	2 cut(s)	850, 2039
NdeII	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
NheI	GCTAGC	1 cut(s)	1243
NlaIV	GGNNCC	4 cut(s)	279, 480, 926, 1149
NmuCI	GTSAC	5 cut(s)	153, 737, 817, 895, 2023
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	4 cut(s)	186, 979, 1547, 2149
NspV	TTCGAA	1 cut(s)	1527
PaeI	GCATGC	2 cut(s)	1547, 2149
PagI	TCATGA	2 cut(s)	916, 2121
PaqCI	CACCTGC	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	1867
PfeI	GAWTC	2 cut(s)	994, 1082
PflMI	CCANNNNNTGG	2 cut(s)	968, 1337
PleI	GAGTC	3 cut(s)	126, 568, 1544
PpsI	GAGTC	3 cut(s)	126, 568, 1544
PpuMI	RGGWCCY	1 cut(s)	1773
PsiI	TTATAA	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	1773
Psp6I	CCWGG	5 cut(s)	1001, 1336, 1360, 1395, 1531
PspEI	GGTNACC	1 cut(s)	737
PspFI	CCCAGC	1 cut(s)	1483
PspGI	CCWGG	5 cut(s)	1001, 1336, 1360, 1395, 1531
PspN4I	GGNNCC	4 cut(s)	279, 480, 926, 1149
PspOMI	GGGCCC	1 cut(s)	1147
PspPI	GGNCC	6 cut(s)	716, 1147, 1148, 1466, 1773, 1922
PspPPI	RGGWCCY	1 cut(s)	1773
PstI	CTGCAG	3 cut(s)	130, 1492, 2200
PstNI	CAGNNNCTG	3 cut(s)	194, 622, 1682
PsuI	RGATCY	1 cut(s)	1438
PvuII	CAGCTG	2 cut(s)	1487, 2201
RsaI	GTAC	5 cut(s)	92, 707, 1374, 1968, 2084
RsaNI	GTAC	5 cut(s)	91, 706, 1373, 1967, 2083
RseI	CAYNNNNRTG	1 cut(s)	1252
SaqAI	TTAA	2 cut(s)	509, 1299
Sau3AI	GATC	7 cut(s)	392, 886, 1110, 1204, 1438, 1519, 1818
Sau96I	GGNCC	6 cut(s)	716, 1147, 1148, 1466, 1773, 1922
SchI	GAGTC	3 cut(s)	127, 569, 1545
ScrFI	CCNGG	7 cut(s)	850, 1003, 1338, 1362, 1397, 1533, 2039
SduI	GDGCHC	4 cut(s)	280, 1151, 1893, 1996
SexAI	ACCWGGT	2 cut(s)	1336, 1360
SfaNI	GCATC	6 cut(s)	486, 582, 1054, 1067, 1694, 1710
SfcI	CTRYAG	5 cut(s)	126, 195, 1488, 2088, 2196
SfuI	TTCGAA	1 cut(s)	1527
SinI	GGWCC	4 cut(s)	716, 1466, 1773, 1922
SmiMI	CAYNNNNRTG	1 cut(s)	1252
SmlI	CTYRAG	2 cut(s)	596, 1628
SmoI	CTYRAG	2 cut(s)	596, 1628
SphI	GCATGC	2 cut(s)	1547, 2149
Sse9I	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1566, 1623, 1843, 2212
SspMI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1728, 1823
StyD4I	CCNGG	7 cut(s)	848, 1001, 1336, 1360, 1395, 1531, 2037
StyI	CCWWGG	4 cut(s)	1195, 1663, 1828, 2205
TaaI	ACNGT	3 cut(s)	544, 570, 1190
TaiI	ACGT	2 cut(s)	642, 2003
TaqI	TCGA	2 cut(s)	699, 1527
TasI	AATT	9 cut(s)	109, 711, 773, 1093, 1305, 1566, 1623, 1843, 2212
TatI	WGTACW	2 cut(s)	90, 705
TauI	GCSGC	3 cut(s)	32, 216, 630
TfiI	GAWTC	2 cut(s)	994, 1082
Tru1I	TTAA	2 cut(s)	509, 1299
Tru9I	TTAA	2 cut(s)	509, 1299
TscAI	CASTG	5 cut(s)	135, 424, 916, 988, 1225
TseFI	GTSAC	5 cut(s)	153, 737, 817, 895, 2023
Tsp45I	GTSAC	5 cut(s)	153, 737, 817, 895, 2023
TspDTI	ATGAA	5 cut(s)	905, 933, 1381, 2110, 2138
TspGWI	ACGGA	6 cut(s)	73, 229, 488, 507, 604, 1176
TspRI	CASTG	5 cut(s)	135, 424, 916, 988, 1225
Van91I	CCANNNNNTGG	2 cut(s)	968, 1337
VpaK11BI	GGWCC	4 cut(s)	716, 1466, 1773, 1922
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	4 cut(s)	1305, 1566, 1623, 1843
XceI	RCATGY	4 cut(s)	186, 979, 1547, 2149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1750
XmaJI	CCTAGG	1 cut(s)	1195
XspI	CTAG	6 cut(s)	306, 575, 1196, 1244, 1728, 1823
ZraI	GACGTC	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.