Rw2G041260

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
67293293 .. 67295589
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041260.1

Sequence Viewer

Length: 1461 bp
ATGGGGTTGTCGGAGCAGTACCAGCCGCTACTCCTCGGACCTGACTCATATTCCCGGATTCCTGACTTGTCACCCGCTGCAATTGAAGAATTTTTGGAGCGAAGGCCTATAGCACTAAGGTGGTGGCCTAGGCTAGTGGTATGGGAGTCGAGGCTGCTATGGATTTTATCCGGTTCATCTATCGTAGTTTCGCTTTTCAATTACATGCTCAGCTTTGTCACATTGATGTTTTGTGGCCATCTGAGTGCATTGGAGCTTGCTGGAGCCTCTATTGCAAGTGTGGGAATCCAAGGTCTTGCTTATGGGATTATGTTGGGCATGGCGAGTGCTGTACAAACTGTTTGTGGGCAAGCCTATGGAGCCAAACACTACGGAGCATTGGGGATAATATGCCAAAGAGCAATCGTCTTGCACTTGGGAGCAGCAATCCTGCTTACATTTTTGTACTGGTGGTCAGGTCCAATACTCGGTCAAATCTTTGCGCGCGGCTTAATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTCCTTCAGGCACAGAACATAGTGAACCCTTTGGCATACATGTCCATTGGAGTTTTCCTCCTTCACACTACTCTCACTTGGTTGGTGGTTTATGTTGTGGACTATGGACTAATAGGTGCTGCTCTTACACTGAGTTTTTCTTGGTTTTTGCTTGTCATTACGTATGGGATTTACATTTTAGTAAGCCCCAACTGCAAGGAAACTTGGACTGGTTTCTCATGGAAAGCCTTTTCGGGACTTTGGCCTTACTTTAAGCTAACTCTTGCTTCTGCCATCATGTTGTGGTTAGTGCTTATATCAGGGCTCCTAGCCAACCCTACAATCTCATTGGACTCCATTTCTATCTGCATGAACTACTTGAACTGGGACATGCAATTTATGCTAGGCCTCGCTGCTGCAGCAAGCGTTCGAGTGAGTAATGAGCTAGGTGCTGGTCATCCAAAGGTGGCCAAATTTTCTGTGTTTGTAGTGAATGGGACCAGCATCCTGATTAGCATAGTGTTCAGTGCTATTGTGCTGATATTCAAAGTGGGATTGAGCAAGCTATTTACAAGTGACGCCGATGTTATTGAGGCAGTATCTGAATTGACCCCCTTGCTAGCCATCTCTGTTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCTGTTGTAGCTTATGTGAACCTGACTTGTTATTATATTATCGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAAACTAGTATGGGAGTAGCAGGTATTTGGTGGGGGATGATTATTGGAGTATCTTTACAGACAGCAACTCTAATTGTTCTCACTGCCAGAACCAACTGGGATGCTGAGGTTGTGAACGCGGCTGAGAGATTGAAGAGATCTGCAAGTGTAGAACAATTGCTCTTGGAGGAAAACGGCGTATGA

Protein Analysis

486

Amino Acids

52.9

Weight (kDa)

6.94

Isoelectric Point (pI)

26.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 60 - 207 3.2e-18 MatE
MatE PF01554 268 - 421 1e-23 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1289
AccII CGCG 3 cut(s) 484, 486, 1397
AciI CCGC 4 cut(s) 26, 75, 486, 1397
AcoI YGGCCR 2 cut(s) 235, 984
AcsI RAATTY 2 cut(s) 89, 989
AcuI CTGAAG 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 1095
AfaI GTAC 3 cut(s) 20, 333, 446
AfiI CCNNNNNNNGG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 8 cut(s) 86, 199, 898, 1063, 1156, 1166, 1279, 1411
AhlI ACTAGT 1 cut(s) 1283
AleI CACNNNNGTG 1 cut(s) 118
AluBI AGCT 7 cut(s) 213, 256, 793, 961, 1081, 1208, 1217
AluI AGCT 7 cut(s) 213, 256, 793, 961, 1081, 1208, 1217
AlwNI CAGNNNCTG 1 cut(s) 1118
AoxI GGCC 6 cut(s) 104, 125, 235, 779, 922, 984
ApeKI GCWGC 7 cut(s) 77, 154, 422, 656, 929, 932, 935
ApoI RAATTY 2 cut(s) 89, 989
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 2 cut(s) 484, 486
AspS9I GGNCC 3 cut(s) 38, 458, 1014
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 63
AsuNHI GCTAGC 1 cut(s) 1135
AvaII GGWCC 3 cut(s) 38, 458, 1014
AvrII CCTAGG 1 cut(s) 128
BalI TGGCCA 2 cut(s) 237, 986
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 1244
BbvCI CCTCAGC 1 cut(s) 1383
BbvI GCAGC 7 cut(s) 64, 141, 434, 643, 916, 919, 947
BccI CCATC 4 cut(s) 246, 818, 1148, 1194
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 1283
BfaI CTAG 7 cut(s) 129, 134, 845, 920, 962, 1136, 1284
BfmI CTRYAG 2 cut(s) 108, 933
BfuAI ACCTGC 1 cut(s) 1289
BglII AGATCT 1 cut(s) 1415
BlnI CCTAGG 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 3 cut(s) 38, 458, 1014
BmgT120I GGNCC 3 cut(s) 38, 458, 1014
BmiI GGNNCC 5 cut(s) 265, 361, 539, 842, 1015
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 2 cut(s) 910, 1384
BmsI GCATC 2 cut(s) 1029, 1369
BmtI GCTAGC 1 cut(s) 1139
BmuI ACTGGG 2 cut(s) 910, 1384
BpiI GAAGAC 1 cut(s) 1244
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 1383
Bpu1102I GCTNAGC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 1095
BsaJI CCNNGG 3 cut(s) 34, 128, 289
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 4 cut(s) 452, 751, 905, 1379
BseDI CCNNGG 3 cut(s) 34, 128, 289
BseGI GGATG 5 cut(s) 973, 1020, 1205, 1320, 1384
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 6 cut(s) 223, 233, 659, 1191, 1374, 1392
BseNI ACTGG 4 cut(s) 452, 751, 905, 1379
BsePI GCGCGC 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 7 cut(s) 64, 141, 434, 643, 916, 919, 947
Bsh1236I CGCG 3 cut(s) 484, 486, 1397
BshFI GGCC 6 cut(s) 106, 127, 237, 781, 924, 986
BsiSI CCGG 2 cut(s) 55, 171
BslFI GGGAC 3 cut(s) 786, 917, 1027
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 3 cut(s) 786, 917, 1027
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 6 cut(s) 106, 127, 237, 781, 924, 986
Bsp1286I GDGCHC 1 cut(s) 843
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 1 cut(s) 1415
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 4 cut(s) 26, 75, 486, 1397
BspANI GGCC 6 cut(s) 106, 127, 237, 781, 924, 986
BspCNI CTCAG 6 cut(s) 222, 234, 660, 1190, 1375, 1393
BspFNI CGCG 3 cut(s) 484, 486, 1397
BspLI GGNNCC 5 cut(s) 265, 361, 539, 842, 1015
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 1 cut(s) 1289
BspOI GCTAGC 1 cut(s) 1139
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 4 cut(s) 452, 751, 905, 1379
BssECI CCNNGG 3 cut(s) 34, 128, 289
BssHII GCGCGC 1 cut(s) 482
BssMI GATC 1 cut(s) 1415
BssNI GRCGYC 1 cut(s) 1095
BssT1I CCWWGG 2 cut(s) 128, 289
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 1406
BstACI GRCGYC 1 cut(s) 1095
BstAPI GCANNNNNTGC 1 cut(s) 916
BstAUI TGTACA 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 7 cut(s) 258, 351, 484, 940, 1079, 1137, 1206
BstDEI CTNAG 7 cut(s) 116, 209, 242, 668, 1177, 1383, 1401
BstF5I GGATG 5 cut(s) 973, 1020, 1205, 1320, 1384
BstFNI CGCG 3 cut(s) 484, 486, 1397
BstHHI GCGC 2 cut(s) 484, 486
BstKTI GATC 1 cut(s) 1418
BstMBI GATC 1 cut(s) 1415
BstMWI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 729, 916, 935, 1214
BstNSI RCATGY 3 cut(s) 208, 580, 910
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 108, 933
BstSNI TACGTA 1 cut(s) 699
BstUI CGCG 3 cut(s) 484, 486, 1397
BstV1I GCAGC 7 cut(s) 64, 141, 434, 643, 916, 919, 947
BstV2I GAAGAC 1 cut(s) 1244
BstX2I RGATCY 1 cut(s) 1415
BstYI RGATCY 1 cut(s) 1415
BsuRI GGCC 6 cut(s) 106, 127, 237, 781, 924, 986
BtsCI GGATG 5 cut(s) 973, 1020, 1205, 1320, 1384
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 3 cut(s) 665, 1048, 1359
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 7 cut(s) 258, 351, 484, 940, 1079, 1137, 1206
CaiI CAGNNNCTG 1 cut(s) 1118
CfoI GCGC 2 cut(s) 484, 486
Cfr13I GGNCC 3 cut(s) 38, 458, 1014
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 3 cut(s) 19, 332, 445
CviAII CATG 7 cut(s) 205, 319, 577, 756, 814, 886, 907
CviQI GTAC 3 cut(s) 19, 332, 445
DdeI CTNAG 7 cut(s) 116, 209, 242, 668, 1177, 1383, 1401
DpnI GATC 1 cut(s) 1417
DpnII GATC 1 cut(s) 1415
EaeI YGGCCR 2 cut(s) 235, 984
Eam1104I CTCTTC 1 cut(s) 1406
EarI CTCTTC 1 cut(s) 1406
Eco105I TACGTA 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 128, 289
Eco147I AGGCCT 2 cut(s) 106, 924
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 3 cut(s) 38, 458, 1014
Eco57I CTGAAG 1 cut(s) 527
EcoT14I CCWWGG 2 cut(s) 128, 289
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 128, 289
FaeI CATG 7 cut(s) 208, 322, 580, 759, 817, 889, 910
FaqI GGGAC 3 cut(s) 786, 917, 1027
FatI CATG 7 cut(s) 204, 318, 576, 755, 813, 885, 906
FauI CCCGC 1 cut(s) 82
FokI GGATG 5 cut(s) 960, 1007, 1212, 1327, 1391
FriOI GRGCYC 1 cut(s) 843
FspBI CTAG 7 cut(s) 129, 134, 845, 920, 962, 1136, 1284
GlaI GCGC 2 cut(s) 483, 485
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 6 cut(s) 106, 127, 237, 781, 924, 986
HapII CCGG 2 cut(s) 55, 171
HgaI GACGC 1 cut(s) 1103
HhaI GCGC 2 cut(s) 484, 486
Hin1I GRCGYC 1 cut(s) 1095
Hin1II CATG 7 cut(s) 208, 322, 580, 759, 817, 889, 910
Hin6I GCGC 2 cut(s) 482, 484
HinP1I GCGC 2 cut(s) 482, 484
HinfI GANTC 5 cut(s) 44, 58, 146, 285, 869
HpaII CCGG 2 cut(s) 55, 171
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 4 cut(s) 562, 637, 1225, 1393
Hpy188I TCNGA 4 cut(s) 13, 38, 243, 1120
Hpy188III TCNNGA 4 cut(s) 62, 771, 1024, 1153
Hpy8I GTNNAC 4 cut(s) 562, 637, 1225, 1393
HpyAV CCTTC 3 cut(s) 96, 551, 608
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 698
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 729, 916, 935, 1214
HpyF3I CTNAG 7 cut(s) 116, 209, 242, 668, 1177, 1383, 1401
HpySE526I ACGT 1 cut(s) 698
Hsp92I GRCGYC 1 cut(s) 1095
Hsp92II CATG 7 cut(s) 208, 322, 580, 759, 817, 889, 910
HspAI GCGC 2 cut(s) 482, 484
Kzo9I GATC 1 cut(s) 1415
LmnI GCTCC 8 cut(s) 13, 97, 253, 263, 359, 374, 419, 846
Lsp1109I GCAGC 7 cut(s) 64, 141, 434, 643, 916, 919, 947
LweI GCATC 2 cut(s) 1029, 1369
MaeI CTAG 7 cut(s) 129, 134, 845, 920, 962, 1136, 1284
MaeII ACGT 1 cut(s) 698
MaeIII GTNAC 3 cut(s) 69, 217, 1091
MalI GATC 1 cut(s) 1417
MboI GATC 1 cut(s) 1415
MboII GAAGA 3 cut(s) 98, 1244, 1423
MfeI CAATTG 4 cut(s) 81, 1188, 1257, 1433
MflI RGATCY 1 cut(s) 1415
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 2 cut(s) 237, 986
MluNI TGGCCA 2 cut(s) 237, 986
MlyI GAGTC 3 cut(s) 38, 155, 863
Mox20I TGGCCA 2 cut(s) 237, 986
Mph1103I ATGCAT 1 cut(s) 511
MscI TGGCCA 2 cut(s) 237, 986
MseI TTAA 2 cut(s) 491, 789
MslI CAYNNNNRTG 3 cut(s) 118, 224, 243
Msp20I TGGCCA 2 cut(s) 237, 986
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 55, 171
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 4 cut(s) 81, 1188, 1257, 1433
Mva1269I GAATGC 1 cut(s) 1161
MvnI CGCG 3 cut(s) 484, 486, 1397
MwoI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 729, 916, 935, 1214
NciI CCSGG 1 cut(s) 55
NdeII GATC 1 cut(s) 1415
NheI GCTAGC 1 cut(s) 1135
NlaIII CATG 7 cut(s) 208, 322, 580, 759, 817, 889, 910
NlaIV GGNNCC 5 cut(s) 265, 361, 539, 842, 1015
NmuCI GTSAC 3 cut(s) 69, 217, 1091
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 3 cut(s) 208, 580, 910
OliI CACNNNNGTG 1 cut(s) 118
PauI GCGCGC 1 cut(s) 482
PceI AGGCCT 2 cut(s) 106, 924
PciI ACATGT 1 cut(s) 576
PctI GAATGC 1 cut(s) 1161
PfeI GAWTC 2 cut(s) 58, 285
PfoI TCCNGGA 1 cut(s) 53
PleI GAGTC 3 cut(s) 38, 154, 863
PpsI GAGTC 3 cut(s) 38, 154, 863
Ppu21I YACGTR 1 cut(s) 699
PscI ACATGT 1 cut(s) 576
PspN4I GGNNCC 5 cut(s) 265, 361, 539, 842, 1015
PspPI GGNCC 3 cut(s) 38, 458, 1014
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 1415
PteI GCGCGC 1 cut(s) 482
RsaI GTAC 3 cut(s) 20, 333, 446
RsaNI GTAC 3 cut(s) 19, 332, 445
RseI CAYNNNNRTG 3 cut(s) 118, 224, 243
SaqAI TTAA 2 cut(s) 491, 789
Sau3AI GATC 1 cut(s) 1415
Sau96I GGNCC 3 cut(s) 38, 458, 1014
SchI GAGTC 3 cut(s) 38, 155, 863
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 2 cut(s) 1029, 1369
SfcI CTRYAG 2 cut(s) 108, 933
SinI GGWCC 3 cut(s) 38, 458, 1014
SmiMI CAYNNNNRTG 3 cut(s) 118, 224, 243
SnaBI TACGTA 1 cut(s) 699
SpeI ACTAGT 1 cut(s) 1283
SseBI AGGCCT 2 cut(s) 106, 924
SsiI CCGC 4 cut(s) 26, 75, 486, 1397
SspMI CTAG 7 cut(s) 129, 134, 845, 920, 962, 1136, 1284
StuI AGGCCT 2 cut(s) 106, 924
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 2 cut(s) 128, 289
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 701
TaqI TCGA 2 cut(s) 149, 946
TaqII GACCGA 2 cut(s) 458, 1238
TatI WGTACW 2 cut(s) 331, 444
TauI GCSGC 3 cut(s) 28, 489, 1400
TfiI GAWTC 2 cut(s) 58, 285
Tru1I TTAA 2 cut(s) 491, 789
Tru9I TTAA 2 cut(s) 491, 789
TscAI CASTG 3 cut(s) 672, 1048, 1366
TseFI GTSAC 3 cut(s) 69, 217, 1091
TseI GCWGC 7 cut(s) 77, 154, 422, 656, 929, 932, 935
Tsp45I GTSAC 3 cut(s) 69, 217, 1091
TspDTI ATGAA 2 cut(s) 165, 902
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 3 cut(s) 672, 1048, 1366
VpaK11BI GGWCC 3 cut(s) 38, 458, 1014
XapI RAATTY 2 cut(s) 89, 989
XceI RCATGY 3 cut(s) 208, 580, 910
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 7 cut(s) 129, 134, 845, 920, 962, 1136, 1284
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.