FvH4_2g26470

Protein TRANSPARENT TESTA 12-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21248738 .. 21251686
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26470.t1

Sequence Viewer

Length: 1521 bp
ATGGGGTCATCGGAGCAGTACCAGCCGCTACTCCTCGGACTTGACTCACATTCCCGGATTCCTGACTTGTCATCCGCCGTGATTGAAGAGTTTTTGGAGCAAAGTCCTGTAGCAGTGAGGTGGTGGCCTAGGCTAGTGGCATGGGAGTCGAGGTTGCTATGGATATTATCCGGTTCGTCTATCTTAGTTTCGGTTTTTAATTACATGCTCAGCTTTGTCACACTTATGTTCTGTGGCCATCTGAGTGCATTGGAGCTTGCTGGAGCCTCTATTGCAAGTGTGGGAATCCAAGGTCTTGCTTATGGGATTATGTTGGGCATGGCAAGTGCTGTACAAACTGTTTGTGGGCAAGCCTATGGAGCCAAACACCTTAGCGCAATGGGAATCATATGCCAAAGAGCAATCGTCTTGCACTTGGGAGCAGCAGTCCTCCTTACATTTTTGTATTGGTTCTCAGGTCCAATACTTGTAGCCATGGGGCAGTCAGAAAGCATAGCAGAACAGGGTCAAATCTTTGCGCGCGGTTTAATCCCTCAACTCTATGCATTTGCCATAAACTGCCCACAACAGAGGTTTCTTCAGGCACAGAACATAGTGAACCCTTTGGCATACATGTCCATTGGAGTGTTCCTTGTTCACACACTTCTCACTTGGGTGGTGGTGTATGTAGTGGACTATGGACTAATAGGTGCTGCTCTTACACTTAGCTTTTCTTGGTATTTGCTTGTGATTACAAATGGGATTTACATTTTGGTAAGCCCCAACTGCAAGGAAACTTGGACTGGTTTCTCATGGAAAGCCTTTCACGGAATTTGGCCTTATTTTAAGCTAACTATTGCTTCTGCTATCATGTTGTGTTTGGAGATTTGGTACTCTCAAGGGTTGGTGCTTATATCAGGGCTGCTATCAGACCCTACAATCGCACTGGACTCCATTTCTATCTGCATGAACTACTTGAACTGGGACATGCAATTCATGCTAGGCCTTGCTGCTGCAGCGAGTGTTCGAGTGAGTAATGAGCTAGGTGCAGGTCATCCGAAGGTGGCCAAATTTTCGGTATTTGTAGTGAACGGGACCAGCATCCTGATTAGCATAGTGTTCAGTGCTATTGTGCTGATATTCAAAGTTGGATTGAGCAAGCTATTTACAAGTGACAGCGAGGTTATCGAGGCAGTGTCTAATTTGACCCCCTTGCTAGCCATCTCTGTGTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGCCATTGTAGCTTATGTGAACCTGTCTTGTTACTACATTATCGGTCTTCCAATTGCTTGTGTTCTTGGCTTCAAAACTAGCATGGGAGTAGCAGGTATTTGGTGGGGGATGGTTATTGGAGTATTTTTACAGACAGTAACTCTAATTGTTCTCACTGCCAGAACCAATTGGGATGCTGAGGTTGAAAATGCGTCTGAGAGATTGAGGACATCTGCAAATGTAGAAAGGTTGCTCTTAGTGGAAGACGACGTATGA

Protein Analysis

507

Amino Acids

55.01

Weight (kDa)

5.51

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 60 - 219 1.5e-28 MatE
MatE PF01554 281 - 441 1.2e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1019, 1349
AccII CGCG 2 cut(s) 520, 522
AciI CCGC 3 cut(s) 26, 75, 522
AcoI YGGCCR 2 cut(s) 235, 1044
AcsI RAATTY 2 cut(s) 810, 1049
AcuI CTGAAG 1 cut(s) 563
AfaI GTAC 3 cut(s) 20, 333, 872
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 7 cut(s) 86, 958, 1123, 1216, 1226, 1339, 1451
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 7 cut(s) 213, 256, 708, 829, 1021, 1141, 1277
AluI AGCT 7 cut(s) 213, 256, 708, 829, 1021, 1141, 1277
AoxI GGCC 5 cut(s) 125, 235, 815, 982, 1044
ApeKI GCWGC 6 cut(s) 422, 692, 901, 989, 992, 995
ApoI RAATTY 2 cut(s) 810, 1049
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 3 cut(s) 377, 520, 522
AspS9I GGNCC 2 cut(s) 458, 1074
AsuC2I CCSGG 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 1195
AvaII GGWCC 2 cut(s) 458, 1074
AvrII CCTAGG 1 cut(s) 128
BalI TGGCCA 2 cut(s) 237, 1046
BbsI GAAGAC 2 cut(s) 1304, 1515
BbvCI CCTCAGC 1 cut(s) 1443
BbvI GCAGC 6 cut(s) 434, 679, 888, 976, 979, 1007
BccI CCATC 4 cut(s) 246, 1208, 1254, 1369
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 6 cut(s) 129, 134, 980, 1022, 1196, 1344
BfmI CTRYAG 2 cut(s) 108, 993
BfuAI ACCTGC 2 cut(s) 1019, 1349
BisI GCNGC 7 cut(s) 26, 423, 693, 902, 990, 993, 996
BlnI CCTAGG 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 7 cut(s) 27, 424, 694, 903, 991, 994, 997
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 458, 1074
BmgT120I GGNCC 2 cut(s) 458, 1074
BmiI GGNNCC 3 cut(s) 265, 361, 1075
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 2 cut(s) 1089, 1429
BmtI GCTAGC 1 cut(s) 1199
BmuI ACTGGG 1 cut(s) 970
BpiI GAAGAC 2 cut(s) 1304, 1515
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 2 cut(s) 371, 1443
Bpu1102I GCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 34, 128, 289, 474
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 6 cut(s) 137, 167, 411, 441, 854, 884
Bse1I ACTGG 3 cut(s) 787, 930, 965
Bse3DI GCAATG 1 cut(s) 384
BseDI CCNNGG 4 cut(s) 34, 128, 289, 474
BseGI GGATG 6 cut(s) 71, 1033, 1080, 1265, 1380, 1444
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 6 cut(s) 223, 233, 468, 1251, 1434, 1452
BseNI ACTGG 3 cut(s) 787, 930, 965
BsePI GCGCGC 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 6 cut(s) 434, 679, 888, 976, 979, 1007
BsgI GTGCAG 1 cut(s) 1047
Bsh1236I CGCG 2 cut(s) 520, 522
BshFI GGCC 5 cut(s) 127, 237, 817, 984, 1046
BsiSI CCGG 2 cut(s) 55, 171
BslFI GGGAC 2 cut(s) 977, 1087
BsmFI GGGAC 2 cut(s) 977, 1087
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 5 cut(s) 127, 237, 817, 984, 1046
Bsp1407I TGTACA 1 cut(s) 331
Bsp1720I GCTNAGC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 3 cut(s) 26, 75, 522
BspANI GGCC 5 cut(s) 127, 237, 817, 984, 1046
BspCNI CTCAG 6 cut(s) 222, 234, 467, 1250, 1435, 1453
BspFNI CGCG 2 cut(s) 520, 522
BspLI GGNNCC 3 cut(s) 265, 361, 1075
BspMAI CTGCAG 1 cut(s) 997
BspMI ACCTGC 2 cut(s) 1019, 1349
BspOI GCTAGC 1 cut(s) 1199
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 3 cut(s) 787, 930, 965
BssECI CCNNGG 4 cut(s) 34, 128, 289, 474
BssHII GCGCGC 1 cut(s) 518
BssT1I CCWWGG 3 cut(s) 128, 289, 474
Bst4CI ACNGT 2 cut(s) 340, 1402
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 976
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 6 cut(s) 258, 351, 520, 1139, 1197, 1266
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 6 cut(s) 71, 1033, 1080, 1265, 1380, 1444
BstFNI CGCG 2 cut(s) 520, 522
BstHHI GCGC 3 cut(s) 377, 520, 522
BstMWI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 765, 976, 995, 1274
BstNSI RCATGY 3 cut(s) 208, 616, 970
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 108, 993
BstUI CGCG 2 cut(s) 520, 522
BstV1I GCAGC 6 cut(s) 434, 679, 888, 976, 979, 1007
BstV2I GAAGAC 2 cut(s) 1304, 1515
BsuRI GGCC 5 cut(s) 127, 237, 817, 984, 1046
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 6 cut(s) 71, 1033, 1080, 1265, 1380, 1444
BtsI GCAGTG 3 cut(s) 120, 1179, 1419
BtsIMutI CAGTG 5 cut(s) 120, 923, 1108, 1179, 1419
BveI ACCTGC 2 cut(s) 1019, 1349
Cac8I GCNNGC 6 cut(s) 258, 351, 520, 1139, 1197, 1266
CfoI GCGC 3 cut(s) 377, 520, 522
Cfr13I GGNCC 2 cut(s) 458, 1074
CseI GACGC 1 cut(s) 1446
Csp6I GTAC 3 cut(s) 19, 332, 871
CviQI GTAC 3 cut(s) 19, 332, 871
EaeI YGGCCR 2 cut(s) 235, 1044
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 128, 289, 474
Eco147I AGGCCT 1 cut(s) 984
Eco47I GGWCC 2 cut(s) 458, 1074
Eco57I CTGAAG 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 128, 289, 474
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 3 cut(s) 128, 289, 474
FaqI GGGAC 2 cut(s) 977, 1087
FauNDI CATATG 1 cut(s) 389
Fnu4HI GCNGC 7 cut(s) 26, 423, 693, 902, 990, 993, 996
FokI GGATG 6 cut(s) 58, 1020, 1067, 1272, 1387, 1451
Fsp4HI GCNGC 7 cut(s) 26, 423, 693, 902, 990, 993, 996
FspBI CTAG 6 cut(s) 129, 134, 980, 1022, 1196, 1344
GlaI GCGC 3 cut(s) 376, 519, 521
GluI GCNGC 7 cut(s) 26, 423, 693, 902, 990, 993, 996
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 5 cut(s) 127, 237, 817, 984, 1046
HapII CCGG 2 cut(s) 55, 171
HgaI GACGC 1 cut(s) 1446
HhaI GCGC 3 cut(s) 377, 520, 522
Hin6I GCGC 3 cut(s) 375, 518, 520
HinP1I GCGC 3 cut(s) 375, 518, 520
HinfI GANTC 6 cut(s) 44, 58, 146, 285, 384, 929
HpaII CCGG 2 cut(s) 55, 171
Hpy166II GTNNAC 5 cut(s) 598, 637, 673, 1069, 1285
Hpy188I TCNGA 7 cut(s) 13, 38, 243, 487, 910, 1038, 1462
Hpy188III TCNNGA 3 cut(s) 62, 1084, 1213
Hpy8I GTNNAC 5 cut(s) 598, 637, 673, 1069, 1285
Hpy99I CGWCG 1 cut(s) 1517
HpyAV CCTTC 1 cut(s) 1033
HpyCH4III ACNGT 2 cut(s) 340, 1402
HpyCH4IV ACGT 1 cut(s) 1515
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 765, 976, 995, 1274
HpySE526I ACGT 1 cut(s) 1515
HspAI GCGC 3 cut(s) 375, 518, 520
LmnI GCTCC 6 cut(s) 13, 97, 253, 263, 359, 419
Lsp1109I GCAGC 6 cut(s) 434, 679, 888, 976, 979, 1007
LweI GCATC 2 cut(s) 1089, 1429
MaeI CTAG 6 cut(s) 129, 134, 980, 1022, 1196, 1344
MaeII ACGT 1 cut(s) 1515
MaeIII GTNAC 4 cut(s) 217, 1151, 1295, 1402
MboII GAAGA 4 cut(s) 98, 569, 1304, 1520
MfeI CAATTG 3 cut(s) 1248, 1317, 1432
MlsI TGGCCA 2 cut(s) 237, 1046
MluCI AATT 9 cut(s) 199, 810, 971, 1049, 1180, 1248, 1317, 1410, 1432
MluNI TGGCCA 2 cut(s) 237, 1046
MlyI GAGTC 3 cut(s) 38, 155, 923
MmeI TCCRAC 1 cut(s) 1108
Mox20I TGGCCA 2 cut(s) 237, 1046
Mph1103I ATGCAT 1 cut(s) 547
MscI TGGCCA 2 cut(s) 237, 1046
MseI TTAA 3 cut(s) 198, 527, 825
MslI CAYNNNNRTG 5 cut(s) 224, 243, 623, 653, 1205
Msp20I TGGCCA 2 cut(s) 237, 1046
MspI CCGG 2 cut(s) 55, 171
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 3 cut(s) 1248, 1317, 1432
Mva1269I GAATGC 1 cut(s) 1221
MvnI CGCG 2 cut(s) 520, 522
MwoI GCNNNNNNNGC 7 cut(s) 22, 272, 359, 765, 976, 995, 1274
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 474
NdeI CATATG 1 cut(s) 389
NheI GCTAGC 1 cut(s) 1195
NlaIV GGNNCC 3 cut(s) 265, 361, 1075
NmuCI GTSAC 2 cut(s) 217, 1151
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 3 cut(s) 208, 616, 970
OliI CACNNNNGTG 1 cut(s) 653
PauI GCGCGC 1 cut(s) 518
PceI AGGCCT 1 cut(s) 984
PciI ACATGT 1 cut(s) 612
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 3 cut(s) 58, 285, 384
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 7 cut(s) 27, 424, 694, 903, 991, 994, 997
PleI GAGTC 3 cut(s) 38, 154, 923
PpsI GAGTC 3 cut(s) 38, 154, 923
PscI ACATGT 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 265, 361, 1075
PspPI GGNCC 2 cut(s) 458, 1074
PstI CTGCAG 1 cut(s) 997
PteI GCGCGC 1 cut(s) 518
RsaI GTAC 3 cut(s) 20, 333, 872
RsaNI GTAC 3 cut(s) 19, 332, 871
RseI CAYNNNNRTG 5 cut(s) 224, 243, 623, 653, 1205
SaqAI TTAA 3 cut(s) 198, 527, 825
SatI GCNGC 7 cut(s) 26, 423, 693, 902, 990, 993, 996
Sau96I GGNCC 2 cut(s) 458, 1074
SchI GAGTC 3 cut(s) 38, 155, 923
ScrFI CCNGG 1 cut(s) 55
SfaNI GCATC 2 cut(s) 1089, 1429
SfcI CTRYAG 2 cut(s) 108, 993
SinI GGWCC 2 cut(s) 458, 1074
SmiMI CAYNNNNRTG 5 cut(s) 224, 243, 623, 653, 1205
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
Sse9I AATT 9 cut(s) 199, 810, 971, 1049, 1180, 1248, 1317, 1410, 1432
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 3 cut(s) 26, 75, 522
SspMI CTAG 6 cut(s) 129, 134, 980, 1022, 1196, 1344
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 3 cut(s) 128, 289, 474
TaaI ACNGT 2 cut(s) 340, 1402
TaiI ACGT 1 cut(s) 1518
TaqI TCGA 3 cut(s) 149, 1006, 1167
TaqII GACCGA 1 cut(s) 1298
TasI AATT 9 cut(s) 199, 810, 971, 1049, 1180, 1248, 1317, 1410, 1432
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 3 cut(s) 58, 285, 384
Tru1I TTAA 3 cut(s) 198, 527, 825
Tru9I TTAA 3 cut(s) 198, 527, 825
TscAI CASTG 5 cut(s) 120, 930, 1108, 1179, 1426
TseFI GTSAC 2 cut(s) 217, 1151
TseI GCWGC 6 cut(s) 422, 692, 901, 989, 992, 995
Tsp45I GTSAC 2 cut(s) 217, 1151
TspDTI ATGAA 2 cut(s) 962, 964
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 5 cut(s) 120, 930, 1108, 1179, 1426
VpaK11BI GGWCC 2 cut(s) 458, 1074
XapI RAATTY 2 cut(s) 810, 1049
XceI RCATGY 3 cut(s) 208, 616, 970
XmaJI CCTAGG 1 cut(s) 128
XspI CTAG 6 cut(s) 129, 134, 980, 1022, 1196, 1344
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.