Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000941

Physical Location & Seq

Genomic Coordinates Forward (+)

63413060 .. 63415274

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG469800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGAGCCAAAATAAGATTCTGAGTCCTGACTTGTCATCATCCACAGCAGTTGAAGAGTTTCTGGAGCAAAGAGGAGCGGCATTCAAATGCTGGCCTAGGCTTGTTGCATGGGAGTCAAGGCTCCTATGGAGTTTATCAGCTTCATCAATCATTATCTCTATAGCCAATTACATGCTCAGCTTTGTCACTCTCGCGTTTTGTGGCCATTTGAGTCCATTGGAGCTTGCTGGAGCCTCCATTGCTTGTGTGGGAATTCAAGGCCTCGCTTATGGCATCATGTTGGGGATGGCAAGTGCTGTGCAAACAGTATGTGGACAAGCATATGGAGCCAAACACTTGGGAGCAATGGGGATCATATGCCAAAGAGCGTTCATTTTACACTTGGGAGCGGCAATCCTCCTTACACCTCTGTATTGGTGGTCAGAACCAATGCTCATAGCCGTTGGACAATCACATATGATAGCAGAGAAGGGCCAAATCTTTTCCAGGGGTTTACTCCCTCAACTCTATGCATTTGCCATAAACTGTCCCCAGCAAAGGTTCCTTCAAGCGCAAAACATAGTGTACCCTTTGGCATTCATGTCTGTCGCAGTTTTCCTTCTTCACACTCTGCTCACTTGCCTCTGCTTTCATGTTGTGTTTGGAGATATGGTACAGCCAAGGGCTAGTGCTTCTGTCAGGGCTCCTCCCCAACCCTACAACCTCCCTAGACTCCATTTCTATTTGCATGAATTACTTGAACTAGGACATGACATTTATGTTAGGCCTAAGTGCAGCTGCCAGCTATTTGCAAGTGATTCCGAGGTTATCAAGGCAGTGTCTGATTTAACTCCACTGCTCGCCATCTCTATTTTCTTGAATGGCATTCAACCTATACTCTCAGGTGTGGCAATTGGAAGTGGATGGCAAGGTGTTGTGGCTTATGTTAACTTGTTTTGTTACTATTTCATTGGTCTTCCAATTGGGTGTGTTCTTGGCTTCAAACTTAAAATAGGAGTAGCAGGTATTTGGTGGGGGATGATTATTGGAGTTTTCTTACAGACGGTAGCTCTAGTTGTCCTCACTGCCAGAACAAATTGGAATGCTCAGGTTGAAAAAGCAGCTGAGCGGTTGAAGAAATCTGCAAGTGAAGAAAACTTAAGCTTAACACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

385

Amino Acids

42.04

Weight (kDa)

8.23

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	51 - 207	7.3e-24	MatE
MatE	PF01554	259 - 323	2.8e-08	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59030 AT3G59030
fragaria_vesca	FvH4_2g14370 FvH4_2g14370 FvH4_2g26470 FvH4_2g26470 FvH4_2g26470 FvH4_6g37810 FvH4_6g38980 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010 FvH4_6g39010
malus_domestica	MD09G1145600.v1.1 MD17G1131800.v1.1 MD17G1132100.v1.1
prunus_persica	Prupe.3G180200_v2.0.a1 Prupe.3G180400_v2.0.a1 Prupe.3G180900_v2.0.a1
pyrus_communis	pycom09g06590 pycom17g12460 pycom17g12550
rosa_chinensis	RchiOBHm_Chr2g0152571 RchiOBHm_Chr2g0152611 RchiOBHm_Chr6g0295151
rosa_laevigata	RLG00000011817 RLG00000013373 RLG00000020516 RLG00000020647 RLG00000020650
rosa_multiflora	Rmu_co8487657.1_g000001 Rmu_sc0000185.1_g000024 Rmu_ssc0000233.1_g000025
rosa_roxburghii	Rroxscaffold_171G00441390 Rroxscaffold_2G00095540 Rroxscaffold_2G00096850 Rroxscaffold_7G00172690 Rroxscaffold_7G00192070
rosa_rugosa	Rorug02G0423200 Rorug02G0434600 Rorug02G0434900 Rorug02G0434900 Rorug06G0249500
rosa_samantha	Rh2AG483600 Rh2AG495900 Rh2AG496600 Rh2BG495900 Rh2BG507700 Rh2BG508200 Rh2CG469800 Rh2CG482100 Rh2CG482600 Rh2DG506900 Rh2DG519800 Rh6AG362500 Rh6CG221100 Rh6DG363300
rosa_wichuraiana	Rw0G004840 Rw2G039630 Rw2G040800 Rw2G040840 Rw2G041230 Rw2G041260 Rw6G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	995
AccBSI	CCGCTC	3 cut(s)	80, 392, 1111
AccII	CGCG	1 cut(s)	197
AciI	CCGC	3 cut(s)	80, 392, 1111
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	255
AfaI	GTAC	2 cut(s)	569, 657
AfiI	CCNNNNNNNGG	1 cut(s)	540
AflII	CTTAAG	1 cut(s)	1141
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	8 cut(s)	143, 183, 226, 780, 787, 1052, 1106, 1146
AluI	AGCT	8 cut(s)	143, 183, 226, 780, 787, 1052, 1106, 1146
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	5 cut(s)	95, 205, 262, 475, 767
ApeKI	GCWGC	3 cut(s)	777, 780, 1103
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	60
AspA2I	CCTAGG	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	475
AvrII	CCTAGG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	950
BbvI	GCAGC	3 cut(s)	767, 789, 1115
BccI	CCATC	3 cut(s)	283, 854, 900
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	490
BfaI	CTAG	5 cut(s)	99, 669, 711, 746, 1055
BfmI	CTRYAG	2 cut(s)	162, 1154
BfrI	CTTAAG	1 cut(s)	1141
BfuAI	ACCTGC	1 cut(s)	995
BisI	GCNGC	5 cut(s)	81, 393, 778, 781, 1104
BlnI	CCTAGG	1 cut(s)	98
BlpI	GCTNAGC	2 cut(s)	179, 1107
BlsI	GCNGC	5 cut(s)	82, 394, 779, 782, 1105
Bme1390I	CCNGG	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	5 cut(s)	125, 235, 331, 545, 687
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	2 cut(s)	86, 252
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	2 cut(s)	179, 1107
BsaJI	CCNNGG	4 cut(s)	98, 489, 662, 804
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse3DI	GCAATG	2 cut(s)	240, 354
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	98, 489, 662, 804
BseGI	GGATG	4 cut(s)	41, 294, 911, 1026
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMI	GCAATG	2 cut(s)	240, 354
BseMII	CTCAG	5 cut(s)	14, 193, 897, 1098, 1103
BseRI	GAGGAG	2 cut(s)	90, 678
BseXI	GCAGC	3 cut(s)	767, 789, 1115
BseYI	CCCAGC	1 cut(s)	534
BsgI	GTGCAG	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	5 cut(s)	97, 207, 264, 477, 769
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	4 cut(s)	83, 578, 867, 1090
BsnI	GGCC	5 cut(s)	97, 207, 264, 477, 769
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	1 cut(s)	354
Bsp1720I	GCTNAGC	2 cut(s)	179, 1107
BspACI	CCGC	3 cut(s)	80, 392, 1111
BspANI	GGCC	5 cut(s)	97, 207, 264, 477, 769
BspCNI	CTCAG	5 cut(s)	15, 192, 896, 1099, 1102
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	5 cut(s)	125, 235, 331, 545, 687
BspMI	ACCTGC	1 cut(s)	995
BspPI	GGATC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	1141
BsrBI	CCGCTC	3 cut(s)	80, 392, 1111
BsrDI	GCAATG	2 cut(s)	240, 354
BssECI	CCNNGG	4 cut(s)	98, 489, 662, 804
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	98, 662
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	310, 530, 1048
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	1141
BstC8I	GCNNGC	4 cut(s)	95, 228, 785, 843
BstDEI	CTNAG	6 cut(s)	23, 179, 771, 883, 1089, 1107
BstF5I	GGATG	4 cut(s)	41, 294, 911, 1026
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 329
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	2 cut(s)	162, 1154
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	767, 789, 1115
BstV2I	GAAGAC	1 cut(s)	950
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	97, 207, 264, 477, 769
BtsCI	GGATG	4 cut(s)	41, 294, 911, 1026
BtsI	GCAGTG	3 cut(s)	825, 836, 1065
BtsIMutI	CAGTG	3 cut(s)	825, 836, 1065
BveI	ACCTGC	1 cut(s)	995
Cac8I	GCNNGC	4 cut(s)	95, 228, 785, 843
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	568, 656
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	7 cut(s)	111, 175, 280, 583, 635, 731, 752
CviQI	GTAC	2 cut(s)	568, 656
DdeI	CTNAG	6 cut(s)	23, 179, 771, 883, 1089, 1107
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	98, 662
Eco147I	AGGCCT	2 cut(s)	264, 769
Eco24I	GRGCYC	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	98, 662
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	2 cut(s)	98, 662
FaeI	CATG	7 cut(s)	114, 178, 283, 586, 638, 734, 755
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	7 cut(s)	110, 174, 279, 582, 634, 730, 751
FauNDI	CATATG	3 cut(s)	325, 359, 459
Fnu4HI	GCNGC	5 cut(s)	81, 393, 778, 781, 1104
FokI	GGATG	4 cut(s)	28, 301, 918, 1033
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	5 cut(s)	81, 393, 778, 781, 1104
FspBI	CTAG	5 cut(s)	99, 669, 711, 746, 1055
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	5 cut(s)	81, 393, 778, 781, 1104
GsaI	CCCAGC	1 cut(s)	538
GsuI	CTGGAG	2 cut(s)	86, 252
HaeIII	GGCC	5 cut(s)	97, 207, 264, 477, 769
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	7 cut(s)	114, 178, 283, 586, 638, 734, 755
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HindIII	AAGCTT	1 cut(s)	1144
HinfI	GANTC	6 cut(s)	19, 25, 116, 214, 714, 800
HpaI	GTTAAC	1 cut(s)	931
Hpy166II	GTNNAC	4 cut(s)	317, 497, 568, 931
Hpy188I	TCNGA	4 cut(s)	24, 427, 805, 826
Hpy188III	TCNNGA	3 cut(s)	29, 65, 859
Hpy8I	GTNNAC	4 cut(s)	317, 497, 568, 931
HpyAV	CCTTC	3 cut(s)	466, 557, 611
HpyCH4III	ACNGT	3 cut(s)	310, 530, 1048
HpyCH4V	TGCA	7 cut(s)	110, 304, 515, 730, 777, 794, 1127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 329
HpyF3I	CTNAG	6 cut(s)	23, 179, 771, 883, 1089, 1107
Hsp92II	CATG	7 cut(s)	114, 178, 283, 586, 638, 734, 755
HspAI	GCGC	1 cut(s)	554
KspAI	GTTAAC	1 cut(s)	931
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	9 cut(s)	67, 77, 129, 223, 233, 329, 344, 389, 691
Lsp1109I	GCAGC	3 cut(s)	767, 789, 1115
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	5 cut(s)	99, 669, 711, 746, 1055
MaeIII	GTNAC	2 cut(s)	187, 941
MalI	GATC	1 cut(s)	356
MbiI	CCGCTC	3 cut(s)	80, 392, 1111
MboI	GATC	1 cut(s)	354
MboII	GAAGA	5 cut(s)	68, 596, 950, 1129, 1145
MfeI	CAATTG	2 cut(s)	894, 963
MhlI	GDGCHC	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	6 cut(s)	169, 255, 734, 894, 963, 1078
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	4 cut(s)	34, 125, 223, 708
MmeI	TCCRAC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	830, 930, 990, 1142, 1148
MslI	CAYNNNNRTG	1 cut(s)	88
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	780, 1106
MspCI	CTTAAG	1 cut(s)	1141
MspR9I	CCNGG	1 cut(s)	490
MunI	CAATTG	2 cut(s)	894, 963
Mva1269I	GAATGC	4 cut(s)	83, 578, 867, 1090
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	242, 329
NdeI	CATATG	3 cut(s)	325, 359, 459
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	7 cut(s)	114, 178, 283, 586, 638, 734, 755
NlaIV	GGNNCC	5 cut(s)	125, 235, 331, 545, 687
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	178
PceI	AGGCCT	2 cut(s)	264, 769
PctI	GAATGC	4 cut(s)	83, 578, 867, 1090
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	19, 800
PkrI	GCNGC	5 cut(s)	82, 394, 779, 782, 1105
PleI	GAGTC	4 cut(s)	33, 124, 222, 708
PpsI	GAGTC	4 cut(s)	33, 124, 222, 708
Psp6I	CCWGG	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	5 cut(s)	125, 235, 331, 545, 687
PspPI	GGNCC	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	824
PvuII	CAGCTG	2 cut(s)	780, 1106
RsaI	GTAC	2 cut(s)	569, 657
RsaNI	GTAC	2 cut(s)	568, 656
RseI	CAYNNNNRTG	1 cut(s)	88
SaqAI	TTAA	5 cut(s)	830, 930, 990, 1142, 1148
SatI	GCNGC	5 cut(s)	81, 393, 778, 781, 1104
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	4 cut(s)	34, 125, 223, 708
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	2 cut(s)	162, 1154
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
Sse9I	AATT	6 cut(s)	169, 255, 734, 894, 963, 1078
SseBI	AGGCCT	2 cut(s)	264, 769
SsiI	CCGC	3 cut(s)	80, 392, 1111
SspMI	CTAG	5 cut(s)	99, 669, 711, 746, 1055
StuI	AGGCCT	2 cut(s)	264, 769
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	2 cut(s)	98, 662
TaaI	ACNGT	3 cut(s)	310, 530, 1048
TasI	AATT	6 cut(s)	169, 255, 734, 894, 963, 1078
TauI	GCSGC	2 cut(s)	83, 395
TfiI	GAWTC	2 cut(s)	19, 800
Tru1I	TTAA	5 cut(s)	830, 930, 990, 1142, 1148
Tru9I	TTAA	5 cut(s)	830, 930, 990, 1142, 1148
TscAI	CASTG	3 cut(s)	825, 843, 1072
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	777, 780, 1103
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	6 cut(s)	135, 364, 571, 623, 747, 940
TspRI	CASTG	3 cut(s)	825, 843, 1072
Vha464I	CTTAAG	1 cut(s)	1141
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XmaJI	CCTAGG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	5 cut(s)	99, 669, 711, 746, 1055
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.